Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03571 LG1 48820450 48825705 nuclear transcription factor Y subunit A-7 isoform X4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, negative regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
G/A 48820473 splice_region_variant
A/T 48820977 missense_variant p.Ser188Thr
T/A 48820984 missense_variant p.Lys185Asn
G/A 48821158 downstream_gene_variant
C/A 48821535 missense_variant p.Asp76Tyr
A/T 48821542 synonymous_variant p.Ala73Ala
T/A 48821635 downstream_gene_variant
A/T 48821651 downstream_gene_variant
C/A 48821710 downstream_gene_variant
G/A 48821747 downstream_gene_variant
C/T 48821821 downstream_gene_variant
A/T 48821852 downstream_gene_variant
T/A 48821905 downstream_gene_variant
T/A 48822085 downstream_gene_variant
T/A 48822086 downstream_gene_variant
A/G 48822114 downstream_gene_variant
C/T 48822139 downstream_gene_variant
G/A 48822159 downstream_gene_variant
T/C 48822197 downstream_gene_variant
A/T 48822286 downstream_gene_variant
A/G 48822289 downstream_gene_variant
C/A 48822306 downstream_gene_variant
G/A 48822628 downstream_gene_variant
T/A 48822671 downstream_gene_variant
C/T 48822673 downstream_gene_variant
T/C 48822677 downstream_gene_variant
G/T 48822873 downstream_gene_variant
C/A 48823070 intron_variant
A/T 48823079 intron_variant
C/T 48823176 intron_variant
T/A 48823220 intron_variant
A/G 48823253 intron_variant
T/C 48823531 intron_variant
C/T 48823542 intron_variant
G/A 48823633 intron_variant
A/G 48823792 intron_variant
T/C 48823841 intron_variant
A/T 48823955 intron_variant
T/A 48823960 intron_variant
A/T 48823976 intron_variant
A/G 48824099 intron_variant
A/G 48824159 intron_variant
G/C 48824240 intron_variant
G/A 48824283 intron_variant
T/A 48824302 intron_variant
G/A 48824515 intron_variant
A/G 48824578 intron_variant
G/T 48824720 missense_variant p.Leu7Ile
A/T 48824780 intron_variant
G/T 48824851 intron_variant
A/G 48824852 intron_variant
A/G 48824883 intron_variant
A/T 48824938 intron_variant
A/G 48825132 intron_variant
C/T 48825150 intron_variant
C/T 48825153 intron_variant
C/G 48825289 intron_variant
C/T 48825410 intron_variant
A/G 48825426 intron_variant
G/A 48825461 intron_variant
C/T 48825522 5_prime_UTR_variant
C/T 48825560 5_prime_UTR_variant
T/C 48825563 5_prime_UTR_variant
C/T 48825614 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03571.1
MTSAHNLTDNEDEGQHQSESQVQSPSANGISDSAIRTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENEHNDVASADKSQSNINLNSDKNDQTSSDRTS*

>Vu_03571.2
MTSAHNLTDNEDEGQHQSESQVQSPSANGISDSAIRTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENEHNDVASADKSQSNINLNSDKNDQTSSDRTS*


CDS Sequence:
>Vu_03571.1
ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTGCAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTCCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACGAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA

>Vu_03571.2
ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTGCAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTCCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACGAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA


Promoter Sequence:
>Vu_03571::LG1:48825705-48827705(-)
AATAGAATGATGATGTGGCAGTAATTAATGCTTAGGTGTCAAAACACAATTGTGTGCGTTGCTTACGTGGTATTAAACCTAAATTTATATATGAAATGGCGAAAACCCGAGGTTCCTGGCTCCTAAAAAACCGCATCCCCAGCCGTTACCGTACACCCTCACACACCCACCTTCACCTCACTCACACTCATTCTCACTCTCTTACTCTTCTTCTTCGTCTCGTCTTCGTCACCTTCGTTTCAATCACACCTTCTTTTTCGCCCAGATTGTTGCCCGCAAAATCATTTCGACCGGATTGTTCTTCGACCGTAATCACTCCCAATAAACATAACCCAATCAACACACAGGGCAGAACAGATCCAACATTCACCCCTCACACTCAGATGTACACAACACACACTCGTCATTTTCAATCCCAGTAAAACATCGAATCAGTCAATGCCAAATTAATCAGTAAATAAATAAAAAAAATGAGAAAAAGAGAGGGAATAATGCTTCGGTCCGGTGGTGATGCTGGAGACGAAAGAACCCTTGAAAGAGAAATAGGAGAGCCCATCGCGGCAGCCTCGGTGGCGGCAGTTTCCGCCTCTGTAGTGGCGGCGACTATGGACGGAGAAGGGAGAGAACTTCCCGCGTGCGACGAGCGACGAAGGAGGAGAGATTTCGCCTCGACTGGCGACGGCTCCGGTGGCTCGCGGCTGCCAGTCGAGTGGAGGTTTGGACGTGCGATGAAGACGAACCCCTCCCTGGGTTGCCGGTGTTGGAGAGAGCAGACGGGATCGGAGAAGCAGTGGCACGGTGGCTGGAGTTGACGAAGCAGTGGCGTGGAAGAGGCGCGGTGGCCGGTTTCGCCCAAGTCACCAACACCACCACCTCCTCCATAATAGCCATGCCCTCCTCGTCGGAGCAGGAATTCGCGGCTCACTACCGTGCACAGCTCAACCGGTTCCCCAGATCCCAGCGCTACTGGACGGTAAAGTGGCCTCTCGCGTCGGGGAGAAGCTAGGGTTCCGCCTCAGAGAAATCGGTGTCACCACCGTGCAAATCGATCCTAGCGAGGAACAATCCCTACCCCAAATTGTGAGTTTCAATTTTGAGGGTTTTTCATTGTTGAGCCAATTCTTCACCACACACAATAAAATTTTGACTCTTAGTTACTGTTCCCTAATTCTAAATAAAATCCTTTCTTTCCCAATTAAAAAATTATTTTTGAATAAAATTCTTTCTTTCCTAATTTATTTCCTAATTAACCAACACGTAAGCACATTTTTTGACACGTAATCAATAAGTAGTGCCACATCATTAACCCATTAACTTCGTTTAGTTATACTTAACGGAAGGGACTATTTGGACTCAAAAATTTTAAAGTAAGTACCAATTTCAAACATTTTTCTAAAAAGGGACTAAATTGAGATTTGCAAACCAAACTAGGGACAAAATTGGGTATTAAACCTATATATATATTAAACCTATATTTATATACATTTCGATTATTTTTATATCAAAGTTCTAATATATAAAATAATAAATAAAATATAAAATTATGATTATAATTTTAAACTTCAAAACATTATTAGCATAAATTAAATAATATTTGAAATATTTTTTTAATATATACAAATATATTTATATAAACTAAAAGATATGGACTAAATCAATCAGGTGAGTGAATTTTCAATTGATCAAGTCAAGTCAAAGCAGATAAAATATAATCTAAATGTCAGTTTGGACTAAACGGAGTTCTATAAATCTAGTAAATGAAGTCTACTTTAATTATTTGACCAAAATATTGAAGTTATTATGAATCTTATGTTACTAATTGTGTTCCTAAAAAGGCAAAAATAATAATAGAAAAATTACATAGTTTATTATCGAAAGAAAAAACGTAAATTTGCATATTGGTATATTTTGTATTATGAAATGAATTTTTTATATAATAATAATAATAAGAATAAAAAGTTGAGAGGTTTGAAAAGAATATTGTTGGGGAAGATCCAACC


Gene Sequence:
>Vu_03571(-)
ACACATAGAGAAGAGAAAGAAAAAGGAAAGAGAAAGGAAGTATCTGTGGGGAAATAGAAGCAAAAGAAAGATGCAGCAGGATTTGGTGTGTGGATAGGGAGGGTCCAGCGTAGTAGCTGTGTACCCACAAACGCTACGCAACACAGCACATTCTTCTTCACACCACCGCAACCACTTTCTCTCGACCACAATAATTCAACTTCTTCAAGGTTAATTTCCAATTCCTAAACCCTAATTTTCTTCCCTCCAATTCACTTCAATCAATCACCAACCAAATTCTCGTTTTCCGCTTTTCGATTTAATTCTCCCAACAATTATTATTTTCTCTGTCTTTTCTTCCTTTACTGTTTCTTGCTTTTCAATTTTCGCTGATATCACTCCAAGCGAATGTGTAATCACAAGAAAGGCGTGAATTTGTTGGGGTTGACATGCTCTTGGGGTTGTTTGTGTTTGCAATTTTTTATCTTGAGCTTGTGGGTGCTCTGTAACTAACCCAACTGTTATTTTCTCGCTCTACCCGGTTTTGCTTGCAATTTTGGAATTCTTTGTTCGGTTGGTTTGGGGAAATTCTCTTATTCAAATGTTCTGTTGTCGCTTTATTTGAAATTTTATGTTTCATGGTTGATTTTTCTTTATATTTTTATTCCTTCTACTCATGCTACAAGGGCCAGTGAACAACTGTAACAAATAGTAGCAAACTATTTTTATCGTCGCTTATTTGTGATCTGATCTCTACAGTACATCCATCTCTGATATGTGCTTTTGTCTGTCTTTGTTCTGCCTTTATGGTATATCCAATATGTAAGTTCAGTTGAAGAGCTATAAATCGTATATACTGTTGCTGTTTTAGTTTTCGTTTCAGCTTCTTTTACTCTGTTTTATCTATGTAGCTTGTGGCTGTAATACTCCTAACTTCTGTCTACAATTTCGGTTCCAGGTTTGGATAGTGTTACGCCCTACTCGAAACATGACCTCTGCTCACAACCTTACTGGTATTTTACATGAACTTGGTGCAGTTTATTATTTGTAACTTTCCTATTTATGACGAGTAGATTAACTGCATGTCCCAAGTTTAGTTAACAACATATGGAGCAATATAATTGGTGTTTTTGTGTCTAGTGGAATCGTTACAACAACAATAGCTCATCTCTGTCTAAGGAATTGTTAATGGAGAAGTTTCTACTAAACATCAAGTTGAAATTGGGAAAGATGAATAGCTACTGTTTTGAGTGCAGCAAATTTGCATTTAATATTGCTGTGTCATGGATTTATTCTTTTTGTGAAAATAACAAAAAAGGGTAAAAGAATACCTTTCTTAAAGAAAAAATGATAATTTTCAGAAACAGAAAGTTAGGATCTTTTCATAAAAACTTATGTTTCTTACTTACTGTCTAGTAACTTTTAATCTTTGGCTACAATTCACACAGGCAACTAAACTGGATGTTACCCTTTGTTTTATTAATTACCTCTTGAAAATTATTAAAATTATTAGTTTGCATTAAATGATATTGACCTCTCAGTATCACTGATCTACAACTCGCTGTCTTTTGAGGTTGCCTATCTTTTAATCACACAAGTCATTGAATTCACACTCTTGCACTGAAGCTGCATAATATGACTTATTTCTTATATTCTTCTTTTGCTATTTATGGTGTGCTGTTTTTCTGAGAAGCATCTTTGTTTTGATGTCATGCCTAGGGACTGCAATCAACATTTCCTAGCTGTTATATTTTTAGTTTTTACATATGGTTTCATGCTATCGTTAAGCATTTATAAATATCCTATTTTAGCTTTCATAGTATCTCATTTTGTTATTTTAAAAAAATTTGAAACTTCTAAAATTCTTTAAATTTTAGTAAGTCCTATAATCCTCGAATACTTTATCTTTGTTTTTAACTAACTCCTGCACTGGCTACCTTTCTGTCCTACATAATATGTTAATAAATGGCTTAAATATATTTTTAATTCCTCAAATTTGAGTTAATTTTATCTTTCAAATTTAAAATTAATCTTTTTAGTCCTTGTAATTTGAAAAAAGCTTGTTTAGTCCCTTTGCCCAATTGTCTTATGCACACATGTTGTCAAAAGGAGTACTTTGGAAGAAAAATAAACATGTTCTTAAGTATTTAATGATGAGATAAGAATGCAAAATCAAAACAGCTTGCCATTAGCAAATTGTTAATTATATATATTTAATATTTAATGATATTTATGGCAGATGGACTAAAAGAAACATTTTTGAAATTGCAGGGTATAAAATGATCAATTTTAAATTTGGAAGTCAAAAACACCTACTCCAATTTAAGAGGCTAAAAACATATTTAAACTGTTAATATTATTGCTTTGTTGTTCATTAGAGTAGAACCTTCCCTCGGCAACTCCAGTGTGCATTCTAGATTCTAAAATTTTATCATGTGAAAATGGTAAATTGTAAGAACTATGAATTTATTCATGTGTAGTGCTATACTCTAATACTGATACCCGTAACAAGCAAAGCCTAAATGTCTGTTTGATGTTTTCCCTCACTATGCCTCACTGTAGCGTGGGGAATTGTGAAGGGGTTTAAACTATGTTAACTATTAATATTATTCATATCCATCCACGCATTGTAATTACTCACCTTTTTTTATTTATGGTTTATTCATTTCCTGGTATCGGGTCTCCTTTGTATTTCCTTTTGAACTTTGTTTATAATTATCTGTTTTCTTGAGTGATATATTCAATTTTCCCACATTCAAGCTAATTATTTAGAGATTTATAAAGGCAATTAGTGTGCAGGAGTTTGTAGCAAGATCCCCGTTACATCACAGAGGAAATTGTCCTCCACCAAAACAGTGCGCATTAGTTTGAGATGAAAAGAGTTAAATTGTAAGTTGTCACATGTTTAGCAGGTGACAAATTTGGGTAGAAAAGTTCACTTCAACTAATGTTTTTGACAATCTCTGTTTCTTCTGTATTTACAGACTCAACTGAAATCTGGAGTTTGTGTTCCATTTATGATAGATGTTTTTTGCATTCTGATTGTTTCACATGCATTATAAAATACTGTACTAGGTTCGTTTTTAAGATATTTTGTTCTGTTTTGGATTTAGCATCTTAGCTATTAATCCTATTGGAATTTTGATGTTTTTCTTAAATTGAAGCATTTTACTTGTTCCTTCACTCTATTCGGAGAACATATTTACTGTCTGAACTTATGCAACAAAATGTTTATGCAGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTGCAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTATGAACTTCGTCTCTCTTTGGGTTTCATTCTGATTGGCTTAAAAGAGACACGTTTCTTCAATTATTTGACGCCATCAGTCCTCATTGAATCTCATCCTAATATTTGATTAATTCCAGAGTTACTAAGGAATGATTTGTTTTTTGTATGGGCCATAACCATTAGATATCATCCAATTTGTCTTGCCTGTTGTAAGTATAAGATAGACACACGTTGCCGTTGTTTTGTCATTGAAGCAAATTGAATCTGAATATTATCAAATCATGATGAAAATTTTGCCCAGGTTTATTCTTCCTCTAATTCATGAATAAATTAGTATTTTTACATTACGTTTTATCCATTAAGGTGAGTCCCCATGTGCTACAACAAGCCGATTTCAAAGCAGCAATTATGTGAAAAGATTTCTGGATGCCATAGATTTATCGATCTTGTTCTAGTTAACAGAAGACTCAAGGCTTCTGGACTAGCAAATAATTATTCAATCTGAAGTTTTTCTTTCACATTAGTTTTCTTCAGTGGTTGTGTGTGGGTTATTAAGGTTGATTTTAAAGAAACCGTATCTTTTTTGTCATAGCTGTTGAGGTAAATGAATGATTTCCCAAGCGAATGCTGGTGTCACTTTTTATTTGGACATGATATTAAAGTATGCCCCAAATCACCGTTTTCGCTAGTACTGTTCTTGGTATTTTATTTTAGAATGAAAATGTTCAATACGTGTTACTGATTTATTTTACTTTGTTATATAATTGAAGGTACCACCTGTGTATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGGTTTGCTCTAATCTTTTAATGTTGATTCTGTTAATATTCTGGTGTCTCCTTGTATCCTTTTCTTATCCTCCAATTATTGAATCATGTCCTGTTCCAGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTCCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGGTATATCATTCTCTGCTTCTATATATTTCGTTCTAATGACACCAATGTTCTATTGTTGTAAGCTTCTTACCTGACTTCCTATGTAGAGGTACTTACTTGCTCTTGTCCTGTAATAAATGTTGCAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACGAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGAAACTACAGAAATGACAATATCTTAGACAGTGGGGGGATCGATTGTATGTGAGAGATCAATAATACCTGCCTTGGATAACCCACTATTGCTTCATTCTGGCTTTGTAAAAACACTCTAGGTTTTGTGTGGTAGGTACGTTAGGATGTGGCATGATGCAGGTAAAATGTAAATTGAACAGATTTATCAAATATTGGCCTTTGGTAGGTGAGATTTTTATGGTGAGCATTTCTTTTGTATTTGATACTCTAGAGAGATTAGATTGTCCGAAGCCATGTTTGGATGGATCATGTTTATTTACCTTGCTGGAGGCAGTTGAAGGAGTTTCAAGTTTCAACCATGATTGGTGATGGATATTTTTAGTTCTTTCTGTTCAGTAAAATTGATAGAAACATAAATAAGGTCAACATTTCTTACTGGTATTGAAGTTTATATCAATGTTTATTTCAAAAAGGGATGCATTTGAATTTT