Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03539	LG1	48390846	48392324	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	48390860	synonymous_variant	p.Leu5Leu
A/T	48390920	missense_variant	p.Arg25Ser
G/A	48391124	synonymous_variant	p.Arg93Arg
G/C	48391176	missense_variant	p.Val111Leu
A/G	48391619	synonymous_variant	p.Gln258Gln
A/T	48391658	synonymous_variant	p.Ala271Ala
A/G	48391662	missense_variant	p.Lys273Glu
G/A	48391742	synonymous_variant	p.Lys299Lys
G/A	48391835	synonymous_variant	p.Arg330Arg
T/A	48392286	missense_variant	p.Ser481Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03539.1

MEDWLTRLGSTPQLDTACKPDLSDRNQCRKCVAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCILTLLLNSQVDSRDGHRALRLGLFVASLAVVVILLLGSGLYFWYTKRRSVENLLAYADLQDERFRLRLGPNTALTWFEIESLVKATNNFSPQNFIGRGGFGMVYKGILPDGTMVAVKRLEESDSQGDTLFYSEVEIVSNLKHRNLVPLRGCCLVDGSHNLEYRGRYLVHEYMPNGSLQDHLFPTKLENQYAKKSLTWTQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLVKRSSESTSHLNTIVAGTRGYVAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALEVSSSGTPVFLITDWVWSLMKSGNIGEALDASMFGDGNHATNIMERFLLVGILSSHVVVASRPTILNALKMLEGDIEIPPIPDRPLMHGHYVMYDRDCSGMSSGCGFVSS*

CDS Sequence:
>Vu_03539.1

ATGGAAGATTGGCTCACCAGGCTTGGATCTACGCCACAGCTCGACACTGCGTGTAAACCCGACCTTAGTGATAGAAACCAATGCAGAAAGTGCGTGGCTGAGGGGGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTGGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCATTTTGACTTTGTTGCTTAATTCACAAGTTGATTCAAGGGATGGCCATCGTGCTCTTAGGCTTGGTTTGTTTGTAGCTTCACTTGCAGTCGTGGTAATCCTGTTGTTAGGATCAGGGTTGTATTTTTGGTATACCAAGAGAAGAAGTGTTGAAAATTTGCTCGCCTATGCTGATCTACAGGACGAAAGGTTCAGGCTAAGGCTGGGACCAAATACAGCGTTAACTTGGTTTGAAATTGAGAGTCTCGTGAAGGCCACCAATAATTTTTCACCTCAGAATTTCATTGGTAGAGGTGGGTTTGGGATGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATCCGATTCTCAAGGAGATACTCTGTTCTACAGTGAGGTTGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAAGAGGGTGTTGTTTGGTTGATGGGAGTCACAATCTTGAGTACAGAGGAAGGTATCTAGTTCATGAATATATGCCAAATGGAAGTCTTCAAGACCATCTTTTTCCAACCAAATTAGAGAATCAATATGCAAAGAAATCACTGACTTGGACTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTACACTTTGGAGTTAAGCCTGCAGTGTATCACAGAGATATTAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAGGGTTGGAGATTTTGGGCTAGTCAAACGGAGTAGTGAAAGTACGTCTCATCTAAATACAATAGTTGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAACTAACTGAGAAGAGTGACGTCTACAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCCCTTGAGGTGTCCTCATCAGGGACACCGGTTTTCTTGATCACAGATTGGGTTTGGTCATTAATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTTTGGAGACGGAAATCATGCTACAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTTTCTTCTCATGTAGTTGTTGCTTCAAGGCCAACAATTTTGAATGCCTTGAAGATGTTAGAAGGGGATATTGAAATCCCACCAATTCCAGATAGGCCACTGATGCACGGGCACTATGTAATGTACGATCGTGATTGCTCTGGGATGAGCTCTGGATGTGGGTTTGTGAGCTCATGA

Promoter Sequence:
>Vu_03539::LG1:48388846-48390846(+)

AGATGAAAGGTATGGTGAAAACTCCAGTTACAACGTCTCTCTGGAGAAAACCATTTTATCAAAGAAATAATAGTGGTTCCCTGAGTCAGCTTGATGCTTGTCATGTTGGGTTGTGTTCTGTTAAAATAGATAACTGATTTTCTCCTTGAACAGGTCGGAAAGTTAACTAGCTACACTTCTGGAAGGAAGCATTCCGAACACTTTGGATTAGGTTACATAAAGAGGCGAGCTGCTTCGGAGGGAGACAATGTAATTGTAGGAGACAACATCAGGGGAACAGTGGTGGAAGTACCTTTTCTTTCTCAGCAACGCCAACCATCTGCCACTTGAAGTTCCTGATTATTGAGGGTATTGATACCATTATTGTGCTTGTGTCGTGACGATGATTGGTGTTGTGGAAGAAATTCATGCACAATACTAGAAAATTTAATAAACTGTGTAAGGTTTTTTCTTATCTTTGTCACATTTGCGATGAATTTGTGTATCTTGGCACAACTGGTCAATGGCACCAATCTATCATAAGAATTCATCTTTTGCTTCGTTTTTTTTTCTTGGATGTTGCCTTTTTAACACGGAGCAGACTGAGACCATTCAAATTAGGGGTCTCAATAACTTTTCGAATTTGTGATCTTGTGTGCCAAACTAAAGGTGTTTCCTTTCGCCAATTAAGGCTGCAGCAGCAGTCCTTTGACTAACAAATGTCCAAAGAAAGAGGTTTTCTAATCTTACTTTTTCGGTCAAAATGCAACCGTTGTTCCTTTTTCACCAACTTGCGTAGACAGTAAACAAATTAGAATATTATTATCGTATAAAGTTTGAATATAAAATTCGTATAAAAATTATACACAATTTTGCTACATTATTCTTAATAGAGCTTTGAAACAAATCTTCAATTAATTAAAAAATATCACGATTAATCTTGGAATTACCAAAAGCTTGTTTGCGTAGATAGCCAATCTTACAAGTCAAGTATGAATCCAAGTCAGTTGTCATAAACAACAGTATTAAAGAATGCAATTGACTTTATTAGGCTGTGGCTGTTCACTTGTATACTTCAATTAAATGTTATATATCTGATACAAACTCTTACGACAACAATTCTTGTTAAGGTTCTTTATATTTAAATTTCGCATTGAGCTGTTATTTGAAAATACTCAAATATTAAACATAAAAGCTTGACTCTTAAGTTTAATATGTTGAAAAGTTGTTTTAGGTTGTCAACTACTACGGCATAAAGAAAGAACTTTTCAACCACTTGGTTTGAAGAACTTCAATTATATTCTTATCATGTACAACGCTGTAAGTTATTAATTTATTATTAGTGCATACACAAAGCACATCAGAAATGAAATGCGGCTGTCAATCTCAAAGCTACTTCCTTTCCTTCTTTTCTCTTCTCCCTTTGGTTTCAGCGACCAACTTGGCCTTGTTTGTGTCATTGCTCTGAGAAAGTAAGTTATGCCACAAAATGTTGGACGCCATGGATGAACGTCTAACAAAAAAGTATGCATTCCATGATCCCAACTATATTGTTAGGGACAAAGTATACAACTTTATCAAACTCATCAATACAGTGTCCATTTTTGTTCTTCTGATCTTTTTGGTAGCATCAAATCCAAGCTCAGCAACGCCCTCTCCCTCTCCTTCTCCCACCATTTCCCCCACCAACAATTCTACATGCCCAGTGCCCATGCATTATGTTCAAACAGTCCCTTGGAACATCTCTTCCTGCCAAAATTTCCAACCCTTGTCAACCCAATACCAAACAAGCACAAGTTCTTGTTGCCAAACTCTCCTATCTCTCTTTGGGGTAGCACTTGCACAAAACCTCAAGGAAAACTCCCTTTTTCAACTACCCAATCTCCCTACATCTATCTCTTGCCTCCAACACTTCCAATCCAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCAACATCTGTGCTCGGATTCAAAACA

Gene Sequence:

>Vu_03539(+)