Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03365	LG1	46531376	46532380	PREDICTED: ethylene-responsive transcription factor ERF060	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, response to light stimulus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, protein binding, DNA binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/A	46531812	stop_gained	p.Trp146*
G/A	46532177	missense_variant	p.Glu268Lys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03365.1

MAAAIGMYNNSNIVPEFLDPYSEELMKALEPFVKSDYFSVSSDSASSYRRSHAPSSSSSSSFSSPSSSYSLISSTSYPSPNQIKLNKLTPDQILQIQAQVGLQQHMVYSTQRENQNQLGPKRVPMKHGGAAAKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEQQKTCCSVEDVKPEVHTAAELARVESDVVQSNVCPEFENFKVENGNDNPMLSSPVSGESSSPESGVTFLDFSDFAHSNYEWDEMESFGLEKYPSVEIDWASI*

CDS Sequence:
>Vu_03365.1

ATGGCAGCGGCTATAGGTATGTACAACAACAGCAACATCGTACCGGAATTCCTAGATCCGTACAGTGAGGAGCTGATGAAAGCACTTGAGCCTTTTGTTAAAAGTGATTATTTCTCTGTCTCTTCTGATTCCGCTTCTTCCTATCGTCGATCACACGCTCCTTCTTCTTCCTCTTCTTCTTCTTTTTCTTCTCCATCTTCTTCTTATTCTCTCATTTCATCTACTTCGTATCCCTCCCCCAACCAAATCAAGCTCAACAAACTCACCCCAGACCAAATCCTCCAGATTCAGGCGCAGGTTGGGCTTCAGCAGCACATGGTTTATTCGACTCAACGTGAAAACCAAAACCAGCTGGGCCCAAAACGTGTTCCCATGAAGCACGGTGGCGCGGCGGCGAAAGCCACGAAGCTGTACCGCGGGGTGAGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGGACGCGCCTATGGCTGGGAACATTCGACACCGGAGAAGAAGCGGCGTTGGCGTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGCGAATTCGGAGATTACAAGCCTCTACCTTCTTCCGTCGACTCCAAGCTCCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAACAACAAAAAACGTGTTGCTCTGTCGAAGACGTGAAGCCCGAGGTACACACTGCTGCTGAGCTGGCACGGGTGGAGTCTGACGTGGTGCAATCCAACGTTTGTCCCGAGTTCGAAAATTTTAAGGTAGAAAACGGGAACGACAACCCAATGTTATCATCGCCGGTGTCTGGCGAGTCGTCTTCGCCTGAATCGGGTGTGACTTTCTTGGATTTCTCGGACTTCGCACATTCTAATTATGAGTGGGATGAAATGGAGAGCTTTGGGTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCATCTATATGA

Promoter Sequence:
>Vu_03365::LG1:46529376-46531376(+)

ATATTATTTTCACATCAATTATTAACATTTTTTAATACTTGTGTTTTTAGAATGGGCTAAGACTGTGGGGACGAGCAAATACTTTATATTTCTCCACAAATAAAAAACATTTTTTGTCGTGCATGCACTAAATCACTTTGCATTTTTTCCCCTTTAATTAAATTAATACACAGTTCATGTTTGAATAGTTGATGAAGAGTTGGGTAGTTGGCATTTTCTATGCGAAAAGGTCTTTCATCGAGTGATGTATTATTATGTGGCACATATGTCAAAGTCGCTTTCTCTGCCTTATTCTAAAAAATGACGCAACCCATATGATAATGAAATTGTTTTATGGAGTAATGAAGCATGAGAAAGTAGCTTTTTTTATTCTCGTTTATAGGTTTCTTCTAATTCAACTATCATTATATATAATAATATGACAAAAATTGAATATAAACTTTTTCATTAAATAAATTGTAAAAAGGAAATTTATAAGCTATAGGTTGAGTCTTGGAATTTGAGAAGGAAAATTATAAGTATGCAAAGGTACAAGCATGGAAGTGGCAGTAGTTGTTTTTGCGTTCCTCGAAAGTGATTTCCACGTAGGAATCGACGTGTGAGGGCGTCAGGGATGGCCCCACACTCTCATTTTTTTTCTATAATTCATAATTGTTCCTCACTTGAAATATAGAAGAAGGGTTTAAAAACTTGTTTGAAGAGTAACCGATAAACGACGAAGTTTTTACAACTAAGATGATGTGCAATTAAAAGAATCTCGAATGAAAACTTTCTACGAGAATAAAATCTTTTTTTTTTCTTTTATGAATAAAATATTATTTTAATAGAAATATGTTTTAAAATAATATTTTAATTGATAAAGATGTAAATGGAAAAAAGAAGGATGGAGATGGGTCCACAATGACCTTTGGGAAACGCGAAGGGAATAGGATCCAAAAGTCACTTGCCCTCTCCACAAAAGAAACGCTTGCAAATTGTACTTAAGGGAACCATGACCCTACAATTCGTCAACATTGTGGCGCCGCAATTCATCACACTGTTATTCCGATAACTACCTCTCCACGTTTTTCTCTATGCAATAATCTTCAAACTGTCTTTCTTCATCGTCTAAAACATACCAAAATAATACACCATACAATATTCACTGAATTAAAGTCGTTGAAATAATAAATTAGCAAAAGGTTAACGTCAAATTCCTTTTCACTCACGAACCTAAGGTGGAAATTCTTGACTCAACTCATTTATTTCATTGATTACAACTATTATAGATGTTATAAGAAGTTGGGTAAAATAATTTCTTTTAATCTATTAAAATTTAGAGTTGAGAAAAATGTTTCTCGTGTTTAATTTCACATTTTAAAAAACATACAATAACGATGGAAGCATCTTTAAAAAACAATTTTATAGATGAAGATATTGTTTTAATAAGAAAAGAAGATAATTGATGTGGTAAACGACTTTTTTTTTTTAGTTAAAAAAAAACTCTTTTAAAATTTAAATAATTGATGTGTGGTATGATATTGATTATATGTAAGTTGGAAATATTCTGATGGGTGTAACCAGTGTATGATCGACACGTGTAAGGTAGTAAGGAGGAATGCATAGGTGGCATTCTTCAATTGGATAGCCATCTGGGAATAAAGGAGTGGTTGAAGTTGACGCGCGAGTTGAATGATGAATGAAGAAGAACCCAGGAGACCAACTCCCACCTTAACCTCAGTATATAAACCAGCCTTCACTCACCGTGCTAACGCAAGAGCCAAGCTCACAAAGTGAGGCCAACCAAACTACAAACTCCTTCTACCTCTCTCTTCGCACCAACAGATTCAGCTTTTTAGATTTTCAATTTTCTTAACAAAAAAAAAAATGAACAACTACTCGCAGCTTTGAGTTTTTCACTTCCTGTTCTCTGGTTTTGGAATTGAGACAGGCTCGTAATTTTGAAAACCTCTTTTTTTTTTTCTTTTCTTCTTGGGATTTTCTTTTGTTGTTGTAAAACA

Gene Sequence:

>Vu_03365(+)