Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03335 LG1 46193291 46199305 PREDICTED: transcription factor TGA1 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to bacterium, transcription, DNA-templated, transcription, DNA-templated, transcription, DNA-templated, defense response to bacterium, defense response to bacterium, transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
C/T 46193401 3_prime_UTR_variant
T/C 46193457 3_prime_UTR_variant
A/G 46193680 intron_variant
G/A 46193793 intron_variant
G/A 46193903 intron_variant
G/C 46193913 intron_variant
G/A 46193947 intron_variant
G/A 46193989 intron_variant
G/A 46193995 intron_variant
T/G 46194008 intron_variant
G/A 46194028 intron_variant
C/T 46194049 intron_variant
C/T 46194104 intron_variant
G/A 46194105 intron_variant
G/A 46194137 intron_variant
G/A 46194198 intron_variant
A/T 46194337 intron_variant
G/T 46194378 intron_variant
G/T 46194383 intron_variant
G/T 46194484 intron_variant
G/A 46194490 intron_variant
A/G 46194572 intron_variant
T/C 46194931 intron_variant
G/T 46195351 intron_variant
C/T 46195386 intron_variant
G/T 46195494 intron_variant
T/A 46195506 intron_variant
A/G 46195594 intron_variant
T/A 46195814 synonymous_variant p.Thr176Thr
C/A 46195882 missense_variant p.Ala154Ser
A/G 46195934 intron_variant
A/T 46195938 intron_variant
G/A 46196157 intron_variant
T/A 46196186 intron_variant
C/T 46196949 intron_variant
T/C 46197906 intron_variant
G/A 46197924 intron_variant
A/T 46197929 intron_variant
A/G 46198039 intron_variant
C/T 46198051 intron_variant
G/T 46198211 intron_variant
T/C 46198429 intron_variant
T/G 46198603 intron_variant
C/T 46198755 intron_variant
C/A 46198758 intron_variant
G/T 46198976 intron_variant
G/A 46199009 5_prime_UTR_variant
A/G 46199010 5_prime_UTR_variant
A/G 46199158 5_prime_UTR_variant
T/A 46199186 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03335.1
MDASSSQFVSSRRMEVVYDPIHQISMWEENFKSNANTLTASTSIIEELDMKFDNQVQAQSEEVSHGIFGTSVKYNQDHNRPVDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGIAIFKMEYEHWVEEQNRHILEMRTALSSEIGDMQLGNLVQSIMNHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSGPLTEQQLFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGRGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIHEIGQFLLVLGEYFQRLRALSKLWANRSREALP*


CDS Sequence:
>Vu_03335.1
ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTAGTGTATGATCCTATCCATCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTTGATAATCAAGTTCAGGCGCAATCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACCGGTTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGAAAGAGTCGTTTGAGGAGAAAGGCATACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAATTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACAGCTTTAAGTTCTGAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAACAACTGTTTGATACCTATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCTCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAACCCACATTCCACAGATGGATACTGCAATGGAGAGGTTGGAAGCTCTGGTGAGCTTTGTCAATCAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACATGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAG


Promoter Sequence:
>Vu_03335::LG1:46199305-46201305(-)
TTAAAATTATTAATTACAAATAACAAAATTTAAACACATCAAATAATATCAATGAAAATAATATTTAAATCGTTTTCATTCATTCTTAATTTACATTTATTTGAAAAAAAAAATATATTAATAAACTCGATAAATTTATTTCAATATTTTTTAATTTAAAATATAAATTTATTATTCGTCAAAATTATAATTATAACTATACTTTTATTTATATAATTTAAATATATAGAAATTTTATATATAAATAGGAAGATGTTTTGGTAGAAAAAATTAAAAAAATCTAATGTATGTTTAAGTTACGTTACGTTGTTTAGTAAAGAAAACAAAATCTTATTTTAATTATATTAGGTTTAAATCTCTATGCAACAATTAATGCATTTTCATGATACAATTAACTTAATTTCCCCTTTTACAAAATTAATTGATGTAATTTATACAAAATAAAAACAAAATTAATACTTTTTTTAACCGTGGAGACAAAACAGTGTGAAACTAGTAATGAAGTAAGCAATTAAACGAAAAGTATTTAGACATTATAACAGATTAAATTTAAAATTGTTGTTTTAAATATTTTTAATATTTTAAAAATAAGTTAAAATAGTCCTTTATATCAAAAGCAAGGTGAAATCCCTCCTAAAAATTATAACTTATTTAAAATATTATTAGATGGTAGACAGAAATATCCGTAGCATTTAAGATCTTCAAATAGTACTAGAAAAATTATAGATAAAAATTGTAAAATGATTATAATTTTTTCATTTGATGATATTATAATTATATAGTATTGGAATGTTCATTTTTCTACTATAATAACAATAAATAATAAATTATTATTATTTTATTATAATTGTAAAATAAATATAAATAATTTTTACCATTTTATTATAAATATTTTTATTTATTTTATAAATAATTTTTTTTATTATAAATAGTTACTTTAGTTAAAAAAATAATTAAATTTAAAAAATATAAAATAAAAAATAGATAAATTTAAAAAGAATTTCCACAAAATCGGTAAGATAATTATTTCAATTTTTTAAAGAGGTTAAAATTTTAAAAAAAGTAAATGTATATGAAAAAAAACTGTGACAAAAACACGTCTCTTGCCGCTGTGTATTTGCATTCATTAATATATTTAAAAAAAAAAACAAGTATAATATTAGTTAAAAAAATGTATGTTTATGTTATTTTAAGTGAAAAAAAATACAGAATTATGTTGTCAAAAAAGCCAAACAATTATAATTGACAAATGTAAAAAAATTATATCGCTTAAAAATAAGACTAGTTTAAAAAATATATTTTTAAATAGTTAAAAAGAAATATTATGATAAAATTGTCAAAGAAAAGAATAACATTAAAGATGATTAAACAAATGATTTCTTTTATATATTGTATAGATAAATAATATTTATAAATAAAAATTAACAAAAACAAGTTATACGAAAGAAAAGTAAAATTAGTAAGAAATTATATAAATTAAAATCAATTAAAAAGAGTTAATAGATAAAAATGGAAATGTTAGTATTAAGAGGTTAGTTAATTTGATATATAAAGTGGAAAGAGACCTTGATTTTTGTATGTGATGTAAGTTAAGAAAATCCAGAAAAAAAAAAGTTAAGAATAAAAAGGTGTAAACCATGGAAGATGCTTAGAGGAATTTATCCAAAGATGATTTTGGTGTACACAAAGTTGTTCTCCCATTGGCGTAATCGTAAAATGATGTCAGCAAGAGAACCCCACCAATCTGCAGGATCTACCTGGTGCGCACATTAGTGGTAGTGGAAATGTGACCATCATCATGCTTTCCTATTCCTCTCTCTGTTCTGTGTCTGTGTGAAACCCTTGACTCTCTACCACAACCCAACATCATCAGACAAAAACAGACACGCACAAAAATACAACCTTCTCTAATGCCATTTTTTTTTCCAATTAAAATAACCTAAAGTTCAATTAAAAAACAGTGGCCTTTATTCATCTAAAGCAGTGGCCCCTATTTCAAT


Gene Sequence:
>Vu_03335(-)
AGACATATTAATAATTATAATTCCATGAATATGATGGCAGATTAGAGTAGGGTTGGGAATTTGGTTGTTTTTTTGGTGGTGAGTCACACAGCAAGAAAAAAAAAACACAGTATTTCTCAAAGTAGCTTTCATTAAAATAAAGAATTTTGATTTTCTTTCCTTGTAATTTAAAAATTTAGAGATTTAACTGCTGAGGAAAACGAGGAAGGAAGGACCAGATACTACATAAATACATGACAGCTCTTTATGTTTTTGTTTTTTTGAAGTAGTTGCTTGTGTTGTGCGCTTTCTATGATCACCTTCACAGGTACTTTCTTTCTTTCTTCTCTCTTGCTTCTATAATCATTTTTTGTTTTTCTCTTTGAAAAAGTGTGCATACCGGTTTTGGCTTTGCTTTCACGTACGTACCAAAACTTATGATTTTTGTTGTTGCCCTTTTTTCGACGAGGACTAGTAAGTATCCTAGAATCTATTGTGCGGTTTTTTTTCCTGTCTATCTATCTTTGAAGAAATTAAGAAACTAAAACGTGGATCGGTCAAAAGAATTGATGCGTACTTGGTGCTGCTTTCTGTATTTGTGATAATCTGTACTTTCTTCGCACCCAAAGTTTGTATTTCTTTACCATACTTTTATCCTTCGTTTGCAATACAATTAAGAAATTTGTCTCCTCTGTCCTTCATCACCTTTCAAAAAGTTTAACCAACTGCTTCATTCTGGCTACCCTTTCTGTCTTTTGTCACCTAAGCAGGAAATTTAGTACCATGTTTGGTTCCATGATTCAAACACGATCTTAATACACTCAGTGATAATTTCTACGTTTATGATTCTTCTTTTCCCAATGGGTTTTGACTCACGCTGTGTACATTCCAGAGTGTATTCAACTCAAACAAACTATTTTTTGGTGTCACAAACTTTTCCTCTGCTTCAGCTCTTATCAAACACAATCTTCCAAATTTATGGCATATTCGGTGTTTACTTAGTATTTCTTAAAATGTTCCCATCTACTTTCATTCAATCCAGCTTCCAGATTGGTCACATCACAATGGAGGCTTGCAGATTTCTTTATTCTTCTGGTCTTACTAATCAAATTGACCTTTTCTGCTTTACCCTGGTACGATTCCTTATGATCAACGTCACTCCTTAATGGTGCATGCAATATGATTAAGATGTGTATGAAACAGTGCCGCAATAAGGTTTCTTTTGTTGTATTCTTTCTTGTATAACATGGTAACAGCTGCGCATTTCTGCATCTTGCAACAATTTTCTTATGTTGCACTCGTGTCAGTCTTCAAATATCTTCCATTCCAATTCTTATTTGTTTTCTTTTTGCTTTCTGATTATTTTATTATTAAAATCTAAGTGAAATCTGCTTCCTTAATGCGTTTTATGATTGAATGAATTTTGAATCGTTACGTTTATTCTTAACAGCAGCCTCTATATATGCATATGCATTGAATTTCTGCATCGATTAGTCCATAGAGCATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTAGTGTATGATCCTATCCATCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTTGATAATCAAGTTCAGGCGCAAGTATGTTTACCAAATTTCTACGTTGTCTTTTGCAAATGATAATGCCTGTTTTGCCTACTAATAAAGTTCTGTTTTTCTGTTGAATACCTAGTCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACCGGTTGATAAGGTAACCAGGTTATGTAAAACCCCTTTTTCCTAAAACAGCATAAAGGGGTTATTCTTCGAAATATATTACTGGTTTGAATGGTTTGTATACTTATAACCATTAAATTCTTCCAGCGTTTAAGTTCAAACTGTCTCAGAATACAGATACTTCTGTCCTTAGCTTCAAAAGAAGTTTCTTTTACTAGGAAGCTTATGTAGTTAATGCCATACTTAGATATACTCTCACTTTGGTGGCCACATTCTATGGGGTGCTTTTCTGTAATGTGATAAGTTTATTAAAGCCATTTCAAACAATAGACTTAATCTTAGTGATATTCAAGCATGGGAAGGCACACCATTTACTCTTTTCTTCTTCCTCCATCTTTACCTTTATGTAGAAATTGAGTGACATCAGAAAGTATTTTAGACCCTTGGACTCTAAGGAAACTGCATAAGCACTGCAAATTAAGAGGTCCTCTGCTTCACAGTTTTGAATGTCTGGCTTGTATTCATAACTTTTTTCTTCTTCTACACTTATATGCCGAAAAAAGAGGCAATTTAACATGTTGAAACATGCAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGAAAGAGTCGTTTGAGGAGAAAGGTTTGAAGGTTTATGCATTGGAAGATATTCTAAGCATGTAACAAGTGTTTAGATATACTAATATCATGTGATTTTTTTGATGTTTTTTCACAGGCATACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGTGTTTACTCATGAACTTCTTATAGTTCAATATCTCTTTTTTCTTTTCCTCTTCTCTTGTGAATTTCTGGGGCAACATACCTGCAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGTTTGTAGTTATCAATAGCTCTTGATTCTTCATTTAAACGTGATTATTACTTATTACATATCTAGATAGTTAATGTTGTGATTTTTCCAAAATTAATTTTGTCAAGTAGAGTTTTTATTTTTTTCATTTATCTTCTAAACGAACTTCTAAAATCTTCTTTTAGAAACTGCCTTCATAGTATATATATAGATATTATATCTTTCTGTCTGATACGGTAAACAAAATTGAAACCAGGAATTCATTCAACTTCAGATGACAACAGCAATTTCAAAGCATAGAGTGTGATATTTATTTCACTATTTGTGATGACATTTGCTGCAAAACTAGATTATCTAGTCTCAGATGAAAATACTCAAAAACTTGTGGTGTACTTGTTCTTCTACCCTTTTGCTTAAATTGGCATGATATTGCTCCACCAACCCATGAGAATACTGTCAGCAATTTGATACTGAAAATATTAAATACCACAGGAAATGCATGTACAGCTCCCACGAACCTAACTGCAAACCTTAAATTGTCTTGTAAACTTCAGAATCAGAAACTTCATTTTGGTTGATATAATATTTTCTGGGACTTCTTTTAGCATGTTTTTTCTTGCTCTATTACATTCCTTTTTCCAACTATTTTTGCACTCTAAAAGTACCGAATGTACAGGAATAGCAATTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACAGCTTTAAGTTCTGAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTGATGTTCCTTGTGCTAACATTGTTTGTATGTATTTGACCTCTAAAGTATTTCATATGATACTCACTAACCGAAAAAGTTTCAATTTTTATACTTTTTTTACTTTCTGAAGGCCGAATTCCTTGATGGTTTTTTCTAATCATTCATAATATCATATGGGTGTGACATTTGAATGATGGCATCCTCTTTTCATTTCCTAATATATCATATCTGCTAAGCCATTCTTATTGACACAATGTTTACTGCTTGCAGTACATAACAGAACCACTGTTAGTACTGAAGTTCCTCATTACTGTTGAGTTTTGAGTTGTATTCCAACCTCGTTATATATAATAAATTTACTATAATTGCAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAACAACTGTTTGATACCTATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCTCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAACCCACATTCCACAGATGGATACTGCAATGGAGAGGTTGGAAGCTCTGGTGAGCTTTGTCAATCAGGTAATGTAATCTATGCTTCACTTACTATTATTTTAGGGCCATAAGTATCTTTCAAAAATTTTCTTTAAGGAATATTAAGATAGAAAAAGATATAAAAACAAAAATAAATTTTTGGGTGAGTTAAAATTAATTTATGTTTAAGCTAATTTATAAAAGTTCTTTTATATTATTTTTCTAAAATTTCATTTTATTTTGATTTTGTGCACGAGTTAATTTTAACTTATGGGACATTGAGAGTTTCCTCCTAGTGATCCTCACGAGATTGTTGTATAAATTGTGATAGAATATGTTGAATATCCAATATTAGGTTTCCTGACAAATAAGAAAATGAAGTTTCTGAAAGAAAATTTTTCATATGAATTTAGAGCTACTTTTAGCTTGAATAAACATCTTAAAATGCTTTGAAAGAATTTTGGCAACCTCATGGACTGCAACATGGATTACGTCGAATATGATCTCTTGTAGAGGTTAAAAAATTGTGCTTTCCCTAAGAGAATATGACATCATCTTTAATTAAAAACTTTAAGGTAATAAAATAAATTTACAGTTTCCTTATATGTTTAACTTGTTTATTTATAGATGATGTGATATTTGAATCTAAACAATTTTTCATTACTCATTTTATATTTTATTTATTTATAAGTCGATCATCAAAACAAATTATAGAATTATGACAATTTTTTATTAATTTTTCTTTTATTATTGTGAATGTTTATATATATATATATATTATATATATATATATATATATATATATATATTACACAATAGTTTTACCTAAAAATATAGAAATTAAATTAAGTGAAAGTATTCTAAAAATATAACTAAATACGTATCATATTCTCTAAATTTTCTCAAAAGTATGTATTAATACTGATATTTTAACAAAAACCAAGGCAAAAAAAGGGTTTCTAAAACAACTTTATCTTCGTTTCTTTCTTTATAAGTTGATTTCGAGTATACTTAAAGGAATTTAGATGTTTAAGCATTTTGACTATGTGTATTCCAATTGAACATATCTCCGATAGTAAATAACAACCTCCTTCATCTTGAGTTACTCATAATCTAATAAATCCCTTTAACTATGCTAGTTTTAATTTAATTATTAGGATTTTATATTACCAATTTCTTCGAATAAGCATTAGACAAGAGTGTAACAATATATGAAGGTAGAAATGAAAAACAATATGAAAAAACCTTCTCAAATAATAAACATGTTACATGAGTACTCATCTACAACTCTTACATGGTAATATTGTATTAATCTATGAGCACATGTATTTTGATTATAGGTCAAAGAATAATTTAGAAAAGAATATTTAGTTTTTATTGATAGCAAGTTTAAAAGGTTGAATCTTCTGCTAAACCTAAGATGTGTGACACAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACATGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAGTCATCAAACACATATTATACCAAACAAAAACCAATGACCCATGAACATATAATCAAGTGTCTATATCATTATCCAAATCATGTTCTCTGGCTGCTCACATTTTTCCAGTACTGAGAACTTGTAAATAGTTGTTTCTTACATTTCATATCCTATTTGGTTGTGTCAATTGTGTATAATATAGAATAGCAGAGCAAAATGTTTTG