Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03309 LG1 45886129 45887646 PREDICTED: probable WRKY transcription factor 13
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of lignin biosynthetic process, stress response to cadmium ion, stress response to cadmium ion, regulation of lignin biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of sclerenchyma cell differentiation, regulation of lignin biosynthetic process, regulation of lignin biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of sclerenchyma cell differentiation, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
SNP Position Effect Amino acid change
C/A 45886129 splice_region_variant&synonymous_variant p.???187???
A/G 45886370 intron_variant
G/T 45886569 intron_variant
C/T 45886599 intron_variant
G/A 45886855 intron_variant
C/A 45886965 intron_variant
G/A 45887514 synonymous_variant p.Leu45Leu
G/T 45887585 missense_variant p.Pro21His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03309.1
MSTTSHTIAHHSLFEEQDQIPTQMGFFPFPSNLTLPPLGCHQSSLKAFTSITTPSSLAISQQDSSTSNLTETLFHNSTSTFGGAQFLSLHRSSLNPWALGEVSDCFGSKRSGFDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRFFVSISTWELLMVD*


CDS Sequence:
>Vu_03309.1
ATGTCAACAACTTCACATACCATTGCTCACCACAGCTTATTTGAGGAGCAAGATCAGATTCCTACACAGATGGGGTTCTTTCCCTTTCCATCAAACCTTACTTTGCCTCCTTTGGGTTGCCATCAATCCTCTCTGAAAGCCTTCACCTCCATAACAACACCTTCTTCACTTGCCATATCTCAACAGGATTCTTCTACATCAAATCTAACAGAAACCCTATTTCACAACTCAACTTCTACCTTTGGAGGAGCTCAGTTCCTGTCCTTGCATAGATCCAGTCTAAATCCATGGGCACTGGGAGAAGTGAGTGACTGCTTCGGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGATTCTTCGTCTCCATCTCAACTTGGGAACTTCTTATGGTAGATTAG


Promoter Sequence:
>Vu_03309::LG1:45887646-45889646(-)
GGCAAGAGGCTTTTTTGGCCACATAAAGTCAAATAAGCAATCACCCATCATAATGATACTTCACCACAGTTGCAGAGATGAGTGTGATTGATAATGCATCCAATAATCATCATCACTTCCTCCCATTTTTTATTTTTTATTTTTCAAAATAATAATCTTTTTGTAAATAATCTAAAGAAAGTCTTGTTGTCTTAGATACTTTATGGTGAATTGATGAATATAATGATCGATAAATTTTCACTTACATTTGATTATGGCTAGGTATCTATTTCTATTATTGTGCACTCAACGGGTTTTGCTTTTGCACATATTATAATTATTATCTACAGCCAGGGGATGTTGCATGGAAGTTTCATAGACATTTTTTGAGGCAAAGATAGCAATGAACTTCTCTGTTGAGCTATTTGTCGTGTAATGTTGACCTCCATGCCACAGTAAAATCCCACTAACCATCAAGGACATGGAATTTCCAAGCTTTTTAGGCCCAACAGTACATCACTGTTTTCAGCAAACTGCCAACCGTTGAAAAGATAATGATATTTTGATAATATTTTTTTAACAACATTTTAACATTATCTGTGTATCATTCTGTGATTGATTTATTTCTGTGATTGATTTATGGTAATATTTATGATTATTATTATTGACTGTGGAATAATTTTGGATCAATCACAAAATAACACGTAAATAATATTAAAATATTATAAAAAAATATTGTCAAACATCATTATCATGTTGAAATGTTACTACGTACAACTATCTCTCTCACCTTAACCTTTACCATATTTCTCGCATACTTTTTCCACATTTTAGTTCCCTTCTACAGACTTATCTACCATAAAATCTCCGTTTTTTTATGCCACTATAAAATTCTCAATTTTGGCACATTTATCAGTTGTTAAAATCTACAAATTTTGGCACATTTTTAATAAAAAAACTTAAATGAATAAAAATGATATTTAATACTTTTTATTTATAGATTAAATATTTTTTGGAATTAATCCATCTTCAAAACTTTGGCCTAATTTAGTCCCCAAACTTTAGAAATGTGTGAATTTAGTCCTTTTAACTAAATTTTGTTAGGTTTATTTAATGTTTCAAGTGTGTTTCATGATAGTATTTGAGTTGTTTATATTGTTTGACACATTTTTGCTTCAATGTTAACTGAGAAATGCGTTCAAAACATCAAATAAAGTTAACAAAATTTGGTTAAAAGGACTAAATTCACACATTTCTAAAGTTTGGGGACTAAATTAGTCCAAAGTTTTGAAGAGGGACTAATTCCAATTTTCGCTGAAAGTTAAGGGATCAAAAACATATTTAACCCAATATTTTTTTATTTTGTAAATTTATATACGAAATTGAAATTTATTTATTTCAAATATAATTAGGTTTTCAAACTTTAGAAATAAATAAATAAAATTTTCATAACTTAATTATTAAATAACGTTTTATCCTAGTGCTTGAGAGTTACACTATTTAATACATTTTTGCTTAGATATTAGTTTAGAACACTTTTTAATACAAAAGAAAATTAACTTGTTAGATTAAAAATGATTATATCTATTCATTTTTAAAATTTTAAAACCAAAATATATCAAAATTTAAAATATTTATATTAAGAATAAAATATTTATTCCTTTTATTTATTTATTAGACTTATTTAACTAAAATTTCTGCTTATTCCACCTGTACTGAATGAATGTCCATCCATGTAGTTAGTTATTTCAACTTTCCACAGTTCACATGTTCCAAATACAAACAATATATGACAAACATTTTTGAAAATCATGGAAGAAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGAGAAAAAGGGAAAGTTGGTTTGGCAACGTTATAAGTTTCTGCATTCCATTAGGGTGTAATTCTGACCTCTAAGGTTGGAGAGAAAGCATTTATTGAAGCCTGAGCAAAGCTCTTAGAAACATCATCAGGAATATCTATATAGAAAGAAGGAGAAAAGATCAGAAGAAGTG


Gene Sequence:
>Vu_03309(-)
ATGTCAACAACTTCACATACCATTGCTCACCACAGCTTATTTGAGGAGCAAGATCAGATTCCTACACAGATGGGGTTCTTTCCCTTTCCATCAAACCTTACTTTGCCTCCTTTGGGTTGCCATCAATCCTCTCTGAAAGCCTTCACCTCCATAACAACACCTTCTTCACTTGCCATATCTCAACAGGATTCTTCTACATCAAATCTAACAGAAACCCTATTTCACAACTCAACTTCTACCTTTGGAGGAGCTCAGTTCCTGTCCTTGCATAGATCCAGTCTAAATCCATGGTGAGACAATTCTCTCACTTTCTCTATTAACATCTTGTTAAATATATTAGTTAATCATCAAGATAGATACATCCATATATATTTAAGTGTTTTTTTTTTTCAGTATTAAATTATCATGTAAGTAAAGAGAGTTGGTGTTTGGTTACGATTGAATTTAGGGCACTGGGAGAAGTGAGTGACTGCTTCGGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGGTATTCACGAGTTCAAACCTCCTCTCTTTTTGCTTTAATTCAAAAGTTGATTCAAGAATATTCAATTCATCAAACACTTTCATGATCATTGTATTGCAAACATATCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTATTGTTTTGATCATGATTACATGTATATTCAGCTTTGTTACTGGTTTCGGCAAGATCTTAACTTTTTTTCTGAATAATGTGGTGGTGCCTACAAGAGTTAAAGATATATGTAAAAGCAAAAGTTCATCACTTTATACATCAAGTTCAAAATGTGTATATAAAATATATGTTCTAAGGTTAGAAAGAAAATTACATGTTAATTATGACCCCTCTGATGTTAATTATAGTATGTGAAAATTACATGTCTGAAAGAACTTTTTCCAGACACTCATGCTAAGACTTTTCCTCACAAACCCATTATAGCACTTTCCTGAATAAATGGTCCTTATATTATAGTGCCTTTATGATGGTGAATTGATGGCTCTTACATATTCCGATTATAATTAACATGAGGATGTTTTGTTATTAAATTGTCATTAATGTGTACATGAACAAAATTACTCTCTTACAATGTGATGATGATGATCGATCGAGAAACTCAAAAAAAGATTTCTTATACTGTGTTTGGTCTGCATTGCATGCAGAAGCTATTACCGTTGCACACAAGATAACTGTCGTGTAAAGAAACGCGTGGAGCGCTTAGCGGAGGATCCGAGAATGGTGATAACAACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGATTCTTCGTCTCCATCTCAACTTGGGAACTTCTTATGGTAGATTAG