Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03113 LG1 43817227 43819710 PREDICTED: squamosa promoter-binding-like protein 13A
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   anther development, anther development, anther development, anther development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/T 43817340 missense_variant p.Gly346Glu
G/A 43817345 synonymous_variant p.Ala344Ala
A/C 43817698 stop_lost p.Ter227Glyext*?
A/G 43817807 synonymous_variant p.Ala190Ala
A/G 43817811 missense_variant p.Val189Ala
T/C 43817896 intron_variant
T/A 43818132 intron_variant
C/T 43818134 intron_variant
G/A 43818141 intron_variant
G/A 43818144 intron_variant
G/T 43818145 intron_variant
G/A 43818148 intron_variant
C/T 43818628 intron_variant
T/A 43818784 intron_variant
C/A 43818843 intron_variant
G/T 43818899 intron_variant
T/A 43818925 intron_variant
T/C 43819028 intron_variant
C/G 43819136 intron_variant
T/C 43819168 intron_variant
T/A 43819530 stop_gained p.Lys61*
T/A 43819533 missense_variant p.Thr60Ser
A/G 43819535 missense_variant p.Leu59Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03113.1
MDWNLKAASWDLSEVNQANLPNMETVEGSSRYGMFTSKGEFSVDLKLGQVGNSGTESVLTKSKDAVGLSKISSSSSSSGSSKRARALGNATQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDVRIHGHNQQGELFLGTSPTAYKEGKQLAFLQGDHTLNNQSPHLAGASVGQAHMFLRTGPYSESSGLRCKMLCDSLTSSVHDSSSRALSLLSSPQPHSPGNGLSQIVNPHSPLMQQLGLSLHDGNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEASPVFPFQWG*


CDS Sequence:
>Vu_03113.1
ATGGACTGGAATCTGAAAGCAGCTTCTTGGGATTTGAGTGAAGTGAATCAGGCAAACTTACCCAACATGGAAACAGTGGAAGGCTCAAGCAGATATGGAATGTTTACAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACCAAGTCCAAAGATGCTGTAGGACTCTCCAAAATCTCATCCTCATCTTCATCTTCTGGCTCATCTAAGAGAGCTCGTGCCCTTGGCAACGCCACACAGACAGTCTCGTGTCTTGTCGATGGCTGCCACTCTGATCTCAGTAACTGCAGGGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGATTAGATGGGCACAACAGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACACGTATACCCATCGACTACCGTGATGAATCCGACATGGGGTGGAATTGTTGCTTCTGGTGATGTTAGGATTCATGGACACAACCAACAGGGTGAGCTTTTTCTTGGGACTTCTCCAACCGCTTATAAAGAAGGGAAACAGTTGGCCTTCCTGCAAGGTGACCACACTCTCAACAACCAAAGCCCACATCTCGCGGGTGCTTCCGTGGGCCAGGCCCATATGTTTCTGAGGACCGGCCCGTATTCTGAAAGTAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACGAGCTCGGTCCACGACTCCTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAAATAGTGAACCCGCATTCGCCCCTTATGCAGCAATTGGGCCTCAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCTCTCCAGTGTTTCCCTTTCAATGGGGATAG


Promoter Sequence:
>Vu_03113::LG1:43819710-43821710(-)
ATTGGATAGTGGTTAATTAAAACCTAACTAATATTAGAAAAGAAATAATAAAAAAATTATAATGTCAAAAATATTTATAACAATACAAAAAAAATACTTCTTGTTAACGTTAATAAAAAAAATCCTTGTAGTTATCAACTCATCCTCTCAAAGGTATAAAAGAAAAACCTTAACTAACACTCATCAAGAAATATTCTTGACCTATAATGTCTAAAAAATAAATGTAAAAAAGGAAAATCAACTTACATAAACGGAAGGTAACTTTAGCTAGTATAAGTTGAAAAAATGTATTTGACATCAATAAAAAAAGCATCTTTAACGTGATAAAAAAAATTGACTAACATTAATCAGAAATTACTTTTACCTAACATCAAAAATAAAATTTTAAAAATAAGCTTTTCATTGAAATTTTGAAAAAAAAATGTTAAAATTATGACACTCAATCACTAGTGAAGCCGAACAATACGTATCTTTAATTTGTGACGTCCATATAAGTGACGAATTTTCTATATAAGTGAGGGGACCTTGACTCTACCAAATATATATTTGACATTTTTAAAATTTTTATGTATTCACAACAAATATTTTCACCTTTTAAATTTTTTTTTTCTGAAAATCTACCAAAATCGTGTTGATATACAATATGAAGAAAGAAAACATAAATTTAATTTTTTTAAATCATATAATTCTAAAATTTTAATGTTTAATTAACATAAAATATTAATAAAAAGAAATTATTCTTTTAAAATTACCCTACGAATTCTTAATGACGTTTACAATCTTTACAATGTGGTAGTTGACCAACGAGCTTAGAAGGTTGAAAATAAATTGTTTGGATTTATATTTTGTGGGGATTGAAATACGTAATTAGAGGATATTTTAAATAGGTGATGGTTTGTATTAGATGTTGGATTATTTATTATTTGTGTCGTTAGTGACGGTTAAAGGAGATGTTACTGTAGTGTAGAAAACTAAAAGAGGAAGATAATCCTAATAAAGGAAAAACATGCCATGAAATGTGAAACACAATGCCACATGCCTTGTCTTGAGCATCCATTCTTTGTACTTCTCTTTCCTGACTAAAAAAGCTGAAAGCAACCAACACCCTGTCCTTATTATATCTCCTTTCTTTCCTTTCTTTCTCAAGCTTAAAATACCCACAAGCGACCCCATTTTTGGAAAATGCTTTTTCAAATTGTTAAAATATTCACTTTTACCTGTTAAACAGAGCACATCATCCATATCCTTTTTGGGTTTCATTCTTCTTCTTCTCCTTCTTCTCCTTCTTCAACTTTCTACACAGTTTCACCTTCTTAAATGGCTAACAAGGTATGCTTGTCACATAGATTCCTCCTTCTTTCTGTCCTTTTCACTGTTATTATTTGAAAAAAATCCTTAATTTAACTGTCCAGTGGAGGTTTTGGAAGTGAAGGGAAGAAGAAGGAAGTATCCTTCAGCTACTACGGTTGTCTAAAAGCACTAACTTCTCTCTTTTTTGTTTTCCTTTTTGACATCTTTTTGCTTCATTATACCATGTAGGTGACTTTGTGAATTGTAACTCCGATTTCGTTGGAAGTCTTTGAACTTGGCAGTGTTGTTAGTCATTATCACGTGTTTTCACCACTCTCTGGTGCAGGTTTCTTCTCTCTCTCCTTTTTGCTAAATACGGACAAACAGATGTCCAATATAGTTGCATATAAGGAGCCTATTTTATGGTTGTCTTTTTTATATTTTAATAAAGTTCCTCTGTATCAGTTGCCACTTTAAAAATCTTGTTGAATAGAATTTCGGTTGTTGCACATTAATCAGCAAGAGATACACTTTGATGAAGTTTGGTTCGCCTTCTTTTTTATGAGGGTCTGGTCCAATTAATATTTCTCCCTGCCTAATCTTCTCTTACTTTTCAATTTCCATGCAATTGAAAGCATCCTGGTGTGTGGTATACAGAAAGGGGAGCAAAGAAAGACAAGAGGGGCTGAAAAAGTGCAAGTGTTTTTGGT


Gene Sequence:
>Vu_03113(-)
ATGGACTGGAATCTGAAAGCAGCTTCTTGGGATTTGAGTGAAGTGAATCAGGCAAACTTACCCAACATGGAAACAGTGGAAGGCTCAAGCAGATATGGAATGTTTACAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACCAAGTCCAAAGATGCTGTAGGACTCTCCAAAATCTCATCCTCATCTTCATCTTCTGGCTCATCTAAGAGAGCTCGTGCCCTTGGCAACGCCACACAGACAGTCTCGTGTCTTGTCGATGGCTGCCACTCTGATCTCAGTAACTGCAGGGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTGCATGTTTCATATCTGTATATGTCATCACTTGCTTCAAAATTTTCACGATTTGTCATCTCATTTTTTTTAATCTGAACTCTATATAATACATGCTCTGCTAACCAGAGTTCAGTGAGTTTAAAACCTTATCGGGTCATGCTAGACCTGAAGATTCAGCATGATAAAATACTAATATATTACTCACCAAATCTTTTACCAAAAAGTCTTTATTATTGGTAATGAGATTCAAACCGCTCTTGTAAAATATGAGTTATATCTGTGTGCCAGTTAAACCGACAAATACGAAATACATGTCTAATATTTTAATTTAGCTTTCATGAGAGAAAGAGAGAGAAAGGTAGAAGCAGAATATAAACAAAAAAGGGAATCTGAAGTGATGGAGACTATACTGTATACTGTGTGTGATTAATTAAGAAAAATATCTCCCTCTGCTTAGATAGGTGATTGTGTTGAGGATGGTTGGGATGGTGAGGTGGAATTTGTGCATAAAAGAGTTGTAAATAGTTAACTAAATTTACAGTGAGTGTGATGCTAATTAAGGAGACCGGGCAGTGTGATGTCAGTGAAGTCCTGTAGCTTTAGGTGTACTTGATGGGATGAGTCTGCAATGGTGAGGGTTGTATTATTGAGTTGATAAATCCTGATAAGGTAAGTGGAGTTTTGAGAGCAGTATTATTATGATGAGAATTTTGATTTGATTTGGTGCATTTTGATGGCATAGTTGGGAAGGTGAGATGACATGTTAGCTGAGTGGAGTTGTTTGAATGATAAACCTGTGTAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGATTAGATGGGCACAACAGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTTAGCTTACACTTCTACCTACATTATCTGAGTGGACCCATGTGTGGCTAGATTTGGAGCAGACATTTCCTCAGGATCCCCACATAGCTACACAAATGTTAAGAGTAAGAAATAACACCATCACACAATACACTTACCCACCATTTCTCTTTTCCTCCATTCATCTCCATCCAACTCGCAACGTGTCACTACACACACAACACAATACCCTTTTGCTTTCTCCCATCCCAGCAGTACACTCTTATCTCTATTAACTACCTATCTACTTTGCTTAAACATCTTCTGCCACACCACCACTTTCTCTTACACGGTTTCCACATTTCTCGACAAAAACACACACTCATCCATCAATTATTGCTCAGCCACCACCACCTTTCGCTAACACTCCCCATACACACGCAAAATCTGTACCCATCATCAATAGTACAAAATTCAATTCTAAACATTTCATCACCTCAAATTTAAACCAGTAATTCTTAAAAAATATCAGAAAGACGTTATTTTTAAAAATAAGTAGAAAGAGTTACCCTTTGATGAGTTTTGAGCAGGTACCCAGTTGCTACCTTTCTCAAGTTCACACGTATACCCATCGACTACCGTGATGAATCCGACATGGGGTGGAATTGTTGCTTCTGGTGATGTTAGGATTCATGGACACAACCAACAGGGTGAGCTTTTTCTTGGGACTTCTCCAACCGCTTATAAAGAAGGGAAACAGTTGGCCTTCCTGCAAGGTGACCACACTCTCAACAACCAAAGCCCACATCTCGCGGGTGCTTCCGTGGGCCAGGCCCATATGTTTCTGAGGACCGGCCCGTATTCTGAAAGTAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACGAGCTCGGTCCACGACTCCTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAAATAGTGAACCCGCATTCGCCCCTTATGCAGCAATTGGGCCTCAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCTCTCCAGTGTTTCCCTTTCAATGGGGATAG