Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03020 LG1 42956557 42958533 hypothetical protein C1H46_019017
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of syringal lignin biosynthetic process, regulation of secondary cell wall biogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of syringal lignin biosynthetic process, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of syringal lignin biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of syringal lignin biosynthetic process
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/*,T 42956712 upstream_gene_variant
A/C 42956719 upstream_gene_variant
A/T 42956769 upstream_gene_variant
A/T 42956815 upstream_gene_variant
C/G 42956830 upstream_gene_variant
T/C 42956852 upstream_gene_variant
A/T 42956913 upstream_gene_variant
G/C 42956919 upstream_gene_variant
T/C 42956953 upstream_gene_variant
G/T 42957024 upstream_gene_variant
T/C 42957060 missense_variant p.Trp49Arg
G/A 42957136 missense_variant p.Gly74Glu
G/A 42957160 missense_variant p.Arg82Gln
G/A 42957357 upstream_gene_variant
A/G 42957587 upstream_gene_variant
A/T 42957711 upstream_gene_variant
A/G 42957736 upstream_gene_variant
A/T 42957741 upstream_gene_variant
A/G 42957774 upstream_gene_variant
C/T 42957829 upstream_gene_variant
C/T 42957906 upstream_gene_variant
C/T,* 42957989 upstream_gene_variant
A/G 42958200 upstream_gene_variant
C/A 42958292 missense_variant p.Gln100Lys
A/C 42958356 missense_variant p.Lys121Thr
G/C 42958358 missense_variant p.Glu122Gln
A/G 42958359 missense_variant p.Glu122Gly
T/C 42958361 missense_variant p.Ser123Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03020.1
MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNSSATVPIYLAIFLPTWIIHRQNHHFKKPCFPLHAERIIGPLQYSNPIDCAQGEGSPSTTAEAEHGPTNTPEASIDRPKRVVRQPIYLRDFVTK*


CDS Sequence:
>Vu_03020.1
ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGGAGAGGAAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGTTCAGCTACAGTTCCAATCTACTTGGCCATTTTTCTTCCAACCTGGATAATCCACAGACAAAACCACCATTTCAAGAAACCTTGTTTTCCTCTACATGCTGAAAGAATCATTGGGCCCTTACAGTACTCTAATCCTATTGACTGTGCACAAGGTGAGGGTAGCCCAAGTACTACTGCAGAAGCTGAACACGGCCCAACCAATACTCCAGAGGCTTCTATTGATCGACCTAAGAGGGTTGTGCGTCAGCCAATTTATCTTAGGGATTTTGTTACTAAGTGA


Promoter Sequence:
>Vu_03020::LG1:42954557-42956557(+)
TAAATTCATTATTGTGTTTATATTTTTCTATTCCAACATTTTCAATCATTGAAAAGTCGAATGAAACTCAGATTATAAAAATCATGGACAAAACTATCAAACGTTTATAATTCGAGCGTGTAGTTTAAAAAAAACTTCTCGAGTAAATTATTTATCCGTGAATCCAAAGATCAAAATAACAATTTTCAATTAGCTTAATTAAATTTTAAATCGATAAATTTAGAAATTAATTTAAAATTGAATTCTCAAAAAATTTAAAATTTTTCAATTTAATATTAGATTTTTTTATTAACTATGTAACATAATAATTATTTTATTTTGTTATTATCTTAAATATCGTCATATAACATATTATTACAAAATATAATCGTAACTTTTAAAATTAATTTTCAATAAATGTAACAAATCCTAAAATGATTTCTTGAAGACTACGTATGAATATGGTGACATAATTAGATAATTGTCATATATTACATAATTAAAAAAATATAATTAACAAAAAAATCTAATTACATAAATTTAATTAAATTTTGAAGATTCAATAGAGCACAAATTTAATAGAGATTCAATTAAGAGTTTAAAATATAACAGAGATTTAATTTCCTCTCATTCTGACCAGTTCTTTGTGTTTCATTTGAAAAATAAGTGAAAAAGAAAGAAAAATACCCTTTATGAATAAAATACAAGCCCTGAGTTTTTTGGGTACACCATTTATATTTTCACCCTTACTTTTAATAATATAGAGATAGTTTTATATGCAAGACCTGTTAACTAATTCTTTGATCAATATAAAGACTTTGATGTGAAAAATTGATATGAAAACTTCAGGACTTCACTGAAGCTCTTTTTGAAAAAAAAAAACAAAACATATAAAGCAAATAACCACTTCTTCTCATAATTGCTTTGCATTATAGTATGAGTTACGTATGTAATCACTTTAACAATACTAATATGTATTTACATCTCAAAATTTTCTCTGTCATCTTTTTCTTTCACCATCTTCTGATCTCTTTCTAAAAGTAGACTGTCTTGAGTACGAAGGTATTCCTTGTTTTAATTTTATATGTACGACCATATACCAATTCTATCTTATTCCTGGTTTCGTGTAGTGTACAAGTTACGAGGAGAAAACTATTGACACATTTTTTACCTGTTATAAGTTTCTCTAAGTTCATTTCGACCAGAGATTTTGAAACTGTCCCAGTAGTATTGTATTTTCGTATATTGTTCAACAGATAAAAATATTAATAGGAAATAAATTTTAAATTTAATTCAATTTTATAATATTATAAAATATATATATATCTTAAACATGGACTAAATATTAATAGATATATATTAAAAATTGAAGTTTAAACCTAACGAATGTTAAATCTTACAAATTGCAAATAAAATAATAATGAATGAAAAAAGAATCTGAGTTTAATGTGTCTAATCATGGTGGGAAGCATTAAATAAAGCATTAGTGATTAGCTTGGAGATAATAATGTGGAGATAATCCTGGAAGTCAATATCAGAGAGAGAATCCACTTGCTCTTGATATCATGAGGATGGTGTATAATTGCAGCAGACAGGGAGAAGGTGCATAAACAACCGGCAATGATGTTATGATTACCTAGGCTCCCGTTTTCTTCTCTACCCCTCTTTTTGTTTTGGATTTGGGCGAGGGTTTTAGATGTAGTGGTGTATGAGGAAGTTTGGTTACGTAAGTGGTTCAGAGGTACGTAGAAAATGGTTACACGGTAATGAATAGTTAGCAATATATGGAGTTAGGTTGATGGAATGTCATTGTAGGGTTAGATGGAGATGTGGGTCCATTGCATGGAGCCCAGATGAGGTTCTGAATGTATGTCGGCTAGGGCATGTACTTTTAAAAGGAGAGGAGGAAAGAGAGTCTTTAACTATTGCACACAAATTTCATCCAGGCAATAGAAGCCACTTAGGGAACAAGAATATAAAAGAAGGAAAAAGAAGACGACAGAGCAAGAAGCCTAGAAATA


Gene Sequence:
>Vu_03020(+)
ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGTCTGTTCTTCTCTCTTTTTTTCTTTCTAACAGGAGAGACTATACAATATTTAATAAATTCAACAAATTCTTTTTCAGTAGCTGGTCTAATATGAAAAAATATAACTCAAAAAACAGTATTATTTACTCTCGATGAGAATCAACAGTTGATAAAACTGATGATAATAAATTTACGAAAAAAAATCTAATTATAAGACTTTTGTCATGGTTATTTTTTAATGTAATTGTAGAAATAATTCTTTTAGGGTAGTTTCTGATGAGACTGAAATGAATTTTAGTGATTAAATTTAAAGGACCAGAATCCCTGTGAGTGTAGTGTTTATTATTGTGATCTGTGGTTTGTTAATTGGCTTTCAGGGCTTCAAAGGTGTGGGAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGACCTGATATTAGGAGAGGAAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGGTTTGAATTACACTATATCCCAGAATTTTGAATCATCATCACTTCAATCTTTCTCTTGCTTTACCTGCATTTTCCGCCATACACATGCCTTCTTCTCGGTCCTATATCCCACATCATTAGCTGTCGTTGAGTTGAGTTTAATAGCTTTCTATTAGGCCAAAAAAGAGAGAAAACAATTTGGAAATTATGATATTGGCTATATATATGTGTGATTAATTTTCATTGATTGTTATATAAATGAAGGACTTATGATGATGGCTTATCAAGGCATTCCTTGTCTATGGCTCATCTTTCAATTTCAGTTACATATGAACTTCAATTTTCTGATAAACAACTAAACAAATAAACTAGGTATAAAAGCAGCATTGCACTTCTAGTCTCCATGTATTTGATCTACACAAACTAGTTGAACAGACTATAAGCCAGATTTCTAATTCATTTACCTTGTTTCATGTTGACACCATTCTCAATTATCTCTATCTATTGCTTAAGTTCTTTTTGTCATAAATATCGCAGTCAAAAAGTAATGACACAAGTTGTCCCGTTTTTTTTAAACAAAAGCAAATTTGTTTCTAGGTAAAGGCTACCTAGCTATCAACAGCAGTTTTAGGGAGGTCAAGAGATCAATACTTTAGCCCTACATTTTTTTGTCCACCTTCCCAGTAGATGATACATATCTTACTATTCGTTTTCCATTATCAGGTTTTTCTTCGCACAAATGTTTCCAAACTACAGAGAGAAACCATACATGTCTTAAAAAATACAAGGGTTTTATGTACACTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTATGTCTAAACTTGCTTGATTATATATGGATCTATAAGCATCTGCTACTGAACATATGTTTTCCTTGATTTAAACGGTGGGATTCTATTGATTATTGAATCTGTGAAATGCAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCGTGGATAAAAAAGAAAATAAGAAAGACTTCACTGTCTTCAACCACTATTGCACAAAGTATCGATCACAATTCTTCCCAGTTCAGCTACAGTTCCAATCTACTTGGCCATTTTTCTTCCAACCTGGATAATCCACAGACAAAACCACCATTTCAAGAAACCTTGTTTTCCTCTACATGCTGAAAGAATCATTGGGCCCTTACAGTACTCTAATCCTATTGACTGTGCACAAGGTGAGGGTAGCCCAAGTACTACTGCAGAAGCTGAACACGGCCCAACCAATACTCCAGAGGCTTCTATTGATCGACCTAAGAGGGTTGTGCGTCAGCCAATTTATCTTAGGGATTTTGTTACTAAGTGA