Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03013 LG1 42871325 42872566 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
G/A 42871545 missense_variant p.Arg232Cys
G/A 42871600 synonymous_variant p.Pro213Pro
T/A 42871611 stop_gained p.Arg210*
G/T 42871685 missense_variant p.Ser185Tyr
C/T 42871700 stop_gained p.Trp180*
G/C 42871891 intron_variant
C/T 42872120 intron_variant
T/G 42872187 intron_variant
T/G 42872216 missense_variant p.Lys117Asn
C/T 42872220 missense_variant p.Cys116Tyr
T/A 42872286 missense_variant p.Lys94Ile
A/G 42872289 missense_variant p.Val93Ala
C/T 42872290 missense_variant p.Val93Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03013.1
MDEFECMRDWDLEAIVRGSSGEATAMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPHTIVTTSLSIPIEPQQVKELKASEEKVALQGLKAPPTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLIPPPTTTRNHNTTCSSRTPLMVQSIEDKLVTSVQQSMDLKKEEQHFVEWFDDGAQFGDAWIPTSDLEKFIGFECQHFALDGGFTDGYAHS*


CDS Sequence:
>Vu_03013.1
ATGGATGAATTTGAGTGCATGAGGGATTGGGATTTGGAGGCTATCGTGAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCGAATCCTGATTTTTCTTATTTCTTCTCTGACCAAGACGAGCTGCTCGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTCGAAGATCTCTATAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCACACCATCGTTACAACTTCCTTATCTATCCCCATAGAACCCCAACAGGTCAAAGAACTCAAAGCATCAGAAGAGAAAGTAGCCCTACAGGGTTTGAAAGCCCCCCCAACACCAAAGTGTAAAAAAGGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCTCCGTATCCAAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTGGATCCTGCTGTTTTCTTGGTTACCTACACTGCTGAACACAGCCATCCTCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACGAGGAAGAACAATTCCCTAATTCCCCCTCCAACAACCACTCGCAACCATAACACTACTTGTTCTTCAAGGACGCCTTTGATGGTTCAATCCATTGAAGATAAGCTTGTAACGAGTGTGCAACAAAGCATGGACCTGAAGAAAGAGGAACAACATTTTGTTGAGTGGTTCGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCGACCTCAGATCTGGAGAAGTTTATCGGATTTGAATGCCAACATTTTGCACTGGATGGAGGTTTCACCGATGGTTATGCACACTCTTGA


Promoter Sequence:
>Vu_03013::LG1:42872566-42874566(-)
TACTTATTCTTAACCATTAAATTTAAACCCATTTAAATTCACAAAACTAGTTTTTTAAGATTATATTAGATTTTAAATTTACTTTTTAATATAATATTAAAATAATCTTCAACTTATTTATAATAAAAACTATTATTTATTAAATTTATTGAGTCATCGAGTCGTTATTACACCATTATTAATATCTAATCTTATACTAATATATATATATATATATATATATATATATAGGTAAAAAATGTTTTAAATATTTAAATTAACGTTTTATAATATATAAGTGTGTGTAAATCTTATTTTATAAACTATTTATTCTTAAATTATGGTAAATGGATTTAATAGGAAAAATTGTACATAATTTTTATAAACATATATAAATAAATATCCATTGGATTGGATGTGTGATAAATGAAAGGAACATCTTTAAAGTGTAGAATGAAAAAGGGAAGAGATTAAGTTCGGTTTTGCTAGATTCCTAGCTAGGAATTATAGTATATGGGATAGTGGTTTCGTGCCCAAAAAGGAGAGTGTGGTCTCAAATCTAAGTAAGGATTGGAGCTATTCACAGTGACAACTCTAACATCCTATATATCAAGAAAGAGCTAGAAACGTGTGCGTTATGTAACTAATTATTAGCCCACTCCAACTGACTGCATCAAAAATCCCCAAATCAATTTCCTCAAACTCAAACCTAATCAAAGTTTGGCTGCAACAACACCACTCCCAGATTGCTTAGATTCAGTACATTCACTCAAATTCCTCTACCACCAAAAATGGAAAAGAAACTAAACCTATACGTAAATGAAAATGAAAATTCATATTCAATTTTCCTTATGTGAAACATTTCGTTAGATGTTTCAGTTATGAAGTTGAAGTCACTGAATACCTTCACAATTTGTCATTTCTCGTCGTCCGGTCTCGCTCTTTACGCTTCTTGTTTGCTAGTCCGTCCAAGGGTGTACCTGTTAAAGATACTCTAATGCCAAAGTTAGTAGTTGAACGGTAATCCAATATGACAATAACAGTAATAAGTGCACAGTAAATGCCTCTACCTACTTCTTACCTTTGTCTTATATTTATAGTTTTTTAGCATGAGTTTAGGATTAGCGATATTTTAATCTCGACTCAATCTCAGTCAAATACCCTTAAACTCAATTTACTTTAATTTCCTTAAAATTAATCATTTACACTTGTGAGGCCGGCCATCCCTGCCGATATCTTTGTGGCTTCGATAACCGTCCGGTCATACGGAGTTGTGAACTTTGATGCCGGTACATTAGGTGTATTTGTAAAATAAAGAATGGATAAAGAAAGAAGAGATACATTAGGTGTATTTGTAAAATGAAGAATGGATAAAGAAAGAAGAGAGAAAAAAAAGAGGAAAGTATTAAAATACAATGAATGTGCAGGAAGTGTTACATAAAATATTATAGAAAGATATACTGTATAGCTAACTACATTCATACGAGCAGCTTAATTACTTTTTGGTTATTTGGAGGCTGAAGAGAAAAAACGGGCATGTGTGTGTATAATAATGTGTAAAGTTCAAATTAGTGGTCCCTCGGAAGCAAATTGCATATATTGAATTGACTTAAGCACAAGACTGATTCAATAGTCTTATTATTATTCCCTGTGCTTCACTCGTCTATATGAACCCACGTAAAGGGAAAAGCTTATTAATTGGATCAGCACCGAATTGCTGAAAAATAATAAAAAAAATATCCCTTCTACACATCCACTTGCTCTCATTTTGACTTTATAGTTAGTCAACCCTATTGAAAATACTATTGCCAATTTGAACTTTGAAGCAAGAAGAGAGGACACACATTCAAAACCCTACCCACTGGTTTGGTTTACCATTTCATCTATCTATATATAACCAAACCATTCGGTTGACATTTCTTCAACACGCTCTTCACTCACCAAAAATATTTCTGACTTTCGTTTCAGTTTCAAGTCTCACTGTTTCTTCATTTCTTCATAATTATTGTTATAGTTGGTTG


Gene Sequence:
>Vu_03013(-)
ATGGATGAATTTGAGTGCATGAGGGATTGGGATTTGGAGGCTATCGTGAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCGAATCCTGATTTTTCTTATTTCTTCTCTGACCAAGACGAGCTGCTCGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTCGAAGATCTCTATAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCACACCATCGTTACAACTTCCTTATCTATCCCCATAGAACCCCAACAGGTCAAAGAACTCAAAGCATCAGAAGAGAAAGTAGCCCTACAGGGTTTGAAAGCCCCCCCAACACCAAAGTGTAAAAAAGGGTATGTCAATTTTGCATTCGATCAAGCGCAAAGTTTTCGTCTTCTTTCTTATTTCGGTGTAGATAATTCACAGAAATATATCTTAATAAGGTGAATGTTTGTGATGTACAATTTTGTGTTGAAAGTCAATCACCATGCTACCCAGAGGGAGATATATCAGTTGAATGAGTTTGGAAACATCAAGAGAGAGAGTTTCTGAAAGATCATACCAAAATAGAAAGAAAGTTGTCTATTTTGTTTACACAGACTTAAAAATATGTGATCTTTTTGGAAAGGGGGTGTGGTAGGGCAAAGTGAATAACGATGTGCGTGTTGTTGTCGTTGCAGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCTCCGTATCCAAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTGGATCCTGCTGTTTTCTTGGTTACCTACACTGCTGAACACAGCCATCCTCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACGAGGAAGAACAATTCCCTAATTCCCCCTCCAACAACCACTCGCAACCATAACACTACTTGTTCTTCAAGGACGCCTTTGATGGTTCAATCCATTGAAGATAAGCTTGTAACGAGTGTGCAACAAAGCATGGACCTGAAGAAAGAGGAACAACATTTTGTTGAGTGGTTCGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCGACCTCAGATCTGGAGAAGTTTATCGGATTTGAATGCCAACATTTTGCACTGGATGGAGGTTTCACCGATGGTTATGCACACTCTTGA