Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02990 LG1 42613296 42614228 PREDICTED: ethylene-responsive transcription factor CRF2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cotyledon development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cotyledon development, root development, cotyledon development, regulation of transcription, DNA-templated, root development, cotyledon development, cotyledon development, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, identical protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/C 42613322 missense_variant p.Leu303Val
T/C 42613337 missense_variant p.Ile298Val
C/G 42613716 synonymous_variant p.Ser171Ser
G/A 42613771 missense_variant p.Ala153Val
T/G 42613782 synonymous_variant p.Arg149Arg
T/C 42613875 synonymous_variant p.Arg118Arg
T/A 42613913 missense_variant p.Arg106Trp
G/T 42614037 missense_variant p.Ser64Arg
G/T 42614171 missense_variant p.Gln20Lys
T/A 42614192 missense_variant p.Asn13Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02990.1
MASSAIKQTQHLNRTKLLVQEHTLLKNHHHPKLVRIRVTDADATDSSSDDEQPSVPSTRRRVKSFVNEITIHGARVKVVSRKRKVKSGGAPALRRRTGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKTGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESTLDMFDECDNNVAESSGIFLGDDFDLSGCFVSEKENLDLGFGFGFTSWQRECDNFQDIGDLFLWDPLVAL*


CDS Sequence:
>Vu_02990.1
ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAAGAACACACCCTTTTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGCCCTCCACGCGCCGCAGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCCGAGTTAAAGTTGTTTCCAGGAAAAGAAAGGTGAAGTCTGGCGGCGCTCCGGCGCTCCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAATGGGCGGCTGAGATAAGAGACCCGTCGCGCCGCGTGAGGCTGTGGCTGGGCACTTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGAGGCGCCGACGCGCTCACCAATTTCATAACGCCCCCGGCGGAGGACAGAAAAACCGGTTACTGCTCGGGCGAGGAGTCTCCCAGTGAGGAGCTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAATCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCAGAGGATAGTAAGTTGAAAGACGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCACTTTGGATATGTTTGACGAGTGTGATAACAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGATTTTGATTTGAGTGGATGCTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGGTTTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTCTTTGGGATCCTCTTGTTGCTCTTTGA


Promoter Sequence:
>Vu_02990::LG1:42614228-42616228(-)
CATGAAATTTATTAACAAATAAGATTAAAGTAAGATTACGATAAAAGTAGTTAATATTATGTAAAATCTGAAAGTGGGAAATAAATAAAAGTCTTGAAAGTATTTAATAAAGCTGGAAAATATCTTCCGTTGCAAAAATTTTAAACAAGATGGAAAATAGTCTAAGAAGTTAGAAGAATAAGACTGAAAATAAAGGTGATAGTACTGTCTAAAGTATGTACTGGTCGACATAGGAAAAATTCATCTTCCAATATAAATAACTGACCAGTTTATGATTGATACGATCAACCGATTGGTCAGGCGACATCATACTTAATAAATAAGTTAAAAAACATTAATAGCTAATTAATAAATTTAATAATAACATAAATACGAATATATGATATTAATGAATAATTAATATATTATATTATCTGAAAATACAAAATTAATAAATTTGATTATTATGAAATCTGTAAATATAAAATTAATAATCAAGTAAATATACTCTTCTAAAATAACATAAATCTTTTTGAAAAATATATCTGAGTTGAGCTTCAAGAGTGTTGTCCATAAGTCACCTACGGATCGATAGCAAAGACCTTGGTGAAATAAGAACGTTAGGACACGGAGTAAAGCAGAAAGGTGGACGGTCGTAGAAGATTGAATACGTGAGCACATAAAGGGAAACGGAGAAAAAAAGGACGTTACCCATAAGAGTGGTGATTTGATTTGACTTTATGAATATGATAGTATAGTGTTATGTATGTATGCTCAAGAAGGTTCTGTTTGTTTTGTGGCTCAAGGCATGCATACGAGTAAGCAACTAATTTTCCATTTTCCCATGCATATAAGTAAACAAATATTTCCAATGAATTAATAATGATGATGACCCAGAACTTCCTCAGCGTGCTTTTTTCGGCATCTGTTATCCACTTACCTCTTTAATTTAACATAAAAAGTATGGCTGAAATAAAGGCAAAACAATTCTGAATTACTTCTGCTAATCCACGTCCCAAAATGAATAATGCAGAACCTTCAAATGAAATTGAATTAACCGTTAGAGAAGAACTAAGAAGACCTCTTTTCAGTCAAAGAATGGCTGACCTGAACCAAAGTGTCTCACCTCACGTGATCGGTGTGCCTTCTGTCTTCCCACATGTCCTTTTATCATTTGCCTTAGTTCTGCCACATTTCCTATGTATCTACGCATCACCTCCCCAAAGGTTAAGCCAAAAAAACATTAAAGTAAATCGCATTGATTAAAATAGATGGCATTTAAACCCAGTGTAAGTGTAACTCATAGGTCTGTTGGAACCTAGCTACTGTAAAATAGGTTTCAGGTAACAAAAGAAACAGTACTTTTTCATAGATTTTCTTCCCTCTCCTCACCCCTTTCTTCTTCAAACCAATTCCTTCGATTTCACATCTTTTAACTTTTCATACTGTGCCTTTCGTATCACCAACTGTGCCTTTCGTATCACCACCGATGGTTTGCCAGAGTCGTTTTAGTTCATCTTGTTATTTTGCAGCAGCTACATTATTCCCTTTTCCTGTCATGTAAACTGTTAAAATTGAATATCTTTAGCGGAAAAATGTACACTTTTTCTTCGTCCCAGAGGGTACATGTGGTGGGTGCTGTGTTCTAAGCTTACAACATTTCTTCTTACATCTCTTTTATTCCACGCTGGTGCGAGCAGTGATGCACGCTGTTATTCTCTCCTTTTAAACGTAACTTTCGTTGAACCTTCTCGTTCTTTAATAACTTTAGAAACACTATTTACCCATATTGACGCTACGTTTCTGATTTCTCTCCCTTTTGAGCTTCTCTCTGACGTGTTCTCTCTTTCCTTTCCCTCTTTATTTATATTCTCCCATCCCTTCCGCTCGTGTCCACTCTCTCCATTCTCCAAGGAATCTGTATCACTCTCTATCTCTTACTCTCTCCTTCTTTCTCTTTTTTTCTTTATCTTTTCCCTTTCACTTCTCCGACTCTCTCCACCGTCACCCTCAATGCTGTT


Gene Sequence:
>Vu_02990(-)
ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAAGAACACACCCTTTTGAAAAACCATCACCATCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGAGCAGCCCTCCGTGCCCTCCACGCGCCGCAGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCCGAGTTAAAGTTGTTTCCAGGAAAAGAAAGGTGAAGTCTGGCGGCGCTCCGGCGCTCCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAATGGGCGGCTGAGATAAGAGACCCGTCGCGCCGCGTGAGGCTGTGGCTGGGCACTTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGAGGCGCCGACGCGCTCACCAATTTCATAACGCCCCCGGCGGAGGACAGAAAAACCGGTTACTGCTCGGGCGAGGAGTCTCCCAGTGAGGAGCTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAATCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAGTGCGAACATTCATGGTTTTCAGAGGATAGTAAGTTGAAAGACGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCACTTTGGATATGTTTGACGAGTGTGATAACAACGTTGCAGAGAGCAGTGGTATATTCTTGGGCGATGATTTTGATTTGAGTGGATGCTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGGTTTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTCTTTGGGATCCTCTTGTTGCTCTTTGA