Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02978 LG1 42526398 42528217 PREDICTED: probable WRKY transcription factor 41
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, systemic acquired resistance, regulation of transcription, DNA-templated, immune system process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response to fungus, regulation of transcription, DNA-templated, defense response to bacterium, systemic acquired resistance, defense response to fungus, systemic acquired resistance, defense response to fungus, leaf development, defense response to bacterium, leaf development, immune response, response to organonitrogen compound, regulation of transcription, DNA-templated, response to salicylic acid, regulation of transcription, DNA-templated, defense response to bacterium, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
C/A 42526424 5_prime_UTR_variant
C/A 42526554 5_prime_UTR_variant
G/T 42526556 5_prime_UTR_variant
A/T 42526565 5_prime_UTR_variant
G/A 42526753 missense_variant p.Arg24Lys
A/G 42526762 missense_variant p.Lys27Arg
G/T 42526763 missense_variant p.Lys27Asn
A/G 42527214 missense_variant p.Lys140Arg
A/T 42527215 missense_variant p.Lys140Asn
C/A 42527637 missense_variant p.Leu242Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02978.1
MASEWSWEQNTLINELIQGMELARKLKEDLRLPYSVDSKDMLLQRILSSYEKALLILRCNASTSDLQATSQAPAALLPESPISVHGSPLSEDLDGAIKDHQETQHDSKKRKITPKWMDHVRVSCESGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHRHNIDMHHAQASQESLTKFRNILSVNTDKLDNGDMAYPFTFPSTSSGCMKPYSHSLIPGTLENEYFLSDQYQTNLLSPTTPESNYLPSPTFQMNEFDGIYNKPYSDSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFS*


CDS Sequence:
>Vu_02978.1
ATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGACATGCTGCTGCAGAGGATACTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCAATGCATCAACTTCCGACTTGCAGGCCACGAGTCAAGCACCAGCAGCTTTGTTACCGGAGTCCCCAATATCAGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGCCATCAAGGATCACCAAGAAACTCAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACATTGACATGCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACCATACAGCCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGAACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCCCATCCCCAACTTTCCAGATGAATGAGTTTGACGGAATCTACAACAAGCCTTATTCAGACTCAGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGA


Promoter Sequence:
>Vu_02978::LG1:42524398-42526398(+)
TGGAGCTTCTGAAAGACAATTAATATGGGTGAGAGGATGCATAAATCCATTTATGCATTATGTAGTTTTCATAAAGCAGAAGATAAATGTATATTTTATATATAACTAAAATTTATGATAAATTTTCATAAAAAAAATCTATTTTAAATAAACATTTTGTAAATATAAATCATGTAATAATAAATTATTATTTCAAATATTTAGTTTATATTTCACTTTATGGTATAATAAAAAAACATTATTTTTTAGATTAATGATAAACGATTTACATTCTAATACTACTATTGATTATTAAACAAAGTTTAAATTTATCTTATAAGTGAAGATGACAAGAATAGATTAAAACAGGTAAGGGTTAGGAAAAATCTTATATTTAAAAAAACTCCAAAAATATTAAAAGTATTCTCATTGAATATCATTATTCTAATATTTGTATATTGTGATTGTAGCAGAGAAATTTAATATATAATTTAAACAAGATAAATTATATTATCCTACAGGTTAAATCCAATATCTCAATTGTGATTGTGAAAACTTTTGAAGACTAAATTAACAAGAATTAAACTTTCAATTATGAACTTTGTGATTGTAATAATAAATAATTTGGCAGCTAGAATGTATAGATCCTTTCATTCAAAGTCTATAATAATGAAACATTCAAATGTTGACTTTAAGAAACACAAAGCAAACAGGGATAAGGCATTGGTGTGAAATAGCAGCAAGTTTCTATGAAAGCGCATCATGCAACAAAAAGTAACAGAAACCAAATGCTAACAACAATTAGAAGTTGATGTTTCTGTTTGAATTCGGAAGTTACTCATGTATTTAGTTTTTCACAAATTTATCAAGATTTTGGTATTATTATTATTATTATCAAAATAAAATAAAATAAACAATTTCTAAATACATAAATTGAATAATATTATTCATTATAAATCATAAATAAAACCTGAAATAGAAATACATACAACTTCAAACTCCCATTAAAACATTTTCCTTCCTCGGTCCCCACACTAAAATTTTCCACAATTGATCTACTACATCTTATCTTGCAAAATCATAGGAAAGAAAAATAAGCCCCAGAAACTGCTAAAAAAGTTTAAAAAATGGTTTAGGTTTTAGAAAAATGATAATTATAAAAAAGTAAAAGATAAATTATTTGATTTTCTATTTTATAATATTTGTAATATAACTTAAAATGCAATTAGCATCTTATGAACTTTAAGCCTCTTTTCTATTACTCATAAAAACACATCTTATATTTAACTTGTGAAAAACAGGAACTACCCGCAATCTAAAAGTTTTTTTAGGTTATTTACTAATGTTATCATTTTAAAATTTAACTTATAAAAAAATTTTGTTCGATAATTAATGATATTTTTATAGATGTATGCAAAATTCGAGTAAATTAACCCTAGTTAATCAAGAAATCGAAACTTGTTGCACATGAACAAAGCTAATAAATAAAAAAACATACAAATAAATAATATGAATAACAAGATATTTGATGATAGAGTGAGGTATAGTTAAGAGTATGAAACTACGTAGCTATTTTATGTTGTCTTAGACGAATAGTTTGCGAAAATCAACTGAGAAATTGAGTTGATGGCAACAACCATGTCGCGTAAGCAGTCTCTTATGTTTCTTTGTTTGTTTGAGTCGGGTAATGTAATGAAAAGTAATAGTATTATAGAATTATTAGTGACAAAGTGTCCACGCGGAATGAGGTTTGAAAATTCTCTTACTAGAACTCTTGGATTCAATCATATATCGCAGGAACATGAACCTATGATTAACCAATCATATAACTTAACCACACCAGGTGGACTCGGTCACATTTTCCTATTCTCCACACTCTCCACTGACCAAATCTCGGTCTTAGCTGAAAAACTCGCTTTTCTCAGTCAAACTTGGACTTTCAACTCTCCAATCTTTTGCTCCTTTTTTTCCAACTCAAACCACCCTTTAAATACAATCTTTTCATTCACCCAAAAAAAACA


Gene Sequence:
>Vu_02978(+)
ATACCTTACCTCATCACCCTTTGCTCCTCTAACCTCACTCCCGCTCTCTTCCACGTCAAACCACCAATCCTAATTCTGGCTACGTCCATGGTCATTGCTTACTACACTTCATCACTCCCAGGATCTCATAAACTTCTTCAGCTTCAAACTCAACTGCAGAAAAAGAAACTATTGGTTCTAGATCCTAGTGCTTTTCCAGAATAGAAGTCAGACTATTGGGCATGAGATAAACATCAAGCATCACCATCTCCTATCATTGCCACTATTATTATAAACAACATAAAAATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGACATGCTGCTGCAGAGGATACTATCTTCTTATGAAAAGGCTCTACTGATTCTAAGATGCAATGCATCAACTTCCGACTTGCAGGCCACGAGTCAAGCACCAGCAGCTTTGTTACCGGAGTCCCCAATATCAGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGCCATCAAGGATCACCAAGAAACTCAACATGATTCAAAGAAAAGGTGAATATTACTAGACAGACTTGGAAGCAGTTTTCTGCCACATAAAAAGATAAACTGTGTCTGATTATTATATTATAACTCCTGACAAATTATTTATATTTTATTGGCTTCAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGGTGAGGGGATTTCCCGTAATCATGTCATGCTTTAAAAGATAATGATACATATAGTTAAGGATAAAATTGACATGACCAAGGCCAGCTTCTAATTCACAACCCATTATATCACTTGCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACATTGACATGCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACCATACAGCCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGAACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCCCATCCCCAACTTTCCAGATGAATGAGTTTGACGGAATCTACAACAAGCCTTATTCAGACTCAGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGATTGCACTATAAATGGAACACAATGAGCAATATAGTCTTCCTAAAATAGGACAACTCCAGGCAGAAGTAGAATTTTAGAATAAAGAATCAGCAACTGCAGCACTTATAAATGTCATTCCTTTTAGTCAATATTAGAATTACAGTTTTGGCACAATTTAGCAGTTTGTAGAATGTAATTTCAAATTTATAGGTGCTCCAAATCCGTATTGCTATTTGGTA