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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02879 LG1 41578604 41579674 PREDICTED: myb-related protein 308-like
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Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 41579485 missense_variant p.Lys191Thr
T/G 41579488 missense_variant p.Phe192Cys
A/C 41579506 missense_variant p.Gln198Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02879.1
MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICNLYSTIGSRWSLIAAQLPGRTDNDVKNHWNAKLKKKFLVANTNATVDTVCPQFTTSTTPQSRAEDRVFDHENSAESRVLGLERTHIPVPSPLPLGSNVSGLGSSCSVPLSNEVSVVSNSTSFAKQENQTQWFGYDDDIEGQNEALLLDFVYEDLLLSNGFVSQEKSSEIAPSFG*


CDS Sequence:
>Vu_02879.1
ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAGGGGTCCTTGGTCTCCCGAAGAAGATGAAACCCTAAAAAACTATCTCAAGAAACATGGCACTGGTGGCAATTGGATAACTCTCCCACAAAAAGCAGGCCTAAAGCGGTGTGGGAAAAGTTGTCGTCTGAGATGGCTGAACTATCTCAGACCTCATATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAAGTTATCTGCAACCTTTATTCAACCATCGGAAGCAGGTGGTCTCTTATTGCGGCTCAGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACGCTAAGTTAAAGAAAAAGTTTTTGGTAGCAAACACCAATGCCACTGTGGATACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCGAGCTGAAGACCGTGTCTTCGATCATGAGAACTCAGCCGAGTCTCGTGTTTTGGGTTTGGAGCGGACACACATTCCAGTTCCTTCACCATTGCCTTTAGGATCTAATGTCTCAGGTCTTGGCAGCAGCTGTAGTGTACCACTATCCAATGAAGTTTCAGTCGTTTCAAACTCAACATCCTTTGCGAAACAGGAAAACCAGACTCAATGGTTTGGCTATGATGACGATATTGAAGGTCAAAATGAAGCACTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCACAAGAAAAAAGCAGCGAAATTGCGCCATCATTTGGCTAA


Promoter Sequence:
>Vu_02879::LG1:41576604-41578604(+)
AAAATGGATGGATGGTGTGTGAGATTAGGCAGAGTGTATGTATGAATGTTTGAAGGAGTGATAGAATTTAGATTGCAGATTGGGGCATTTGGTAGTTAGAGTGATCTCCATTTACTTGTAATAACATGAGATCCAGTTTGAAAGGGATACATTGAAAATAGTGATTTGGAGTTTGTGCTGATGGCTGGCTTTGCGTGCCAAGGGTGGCAAACGAGGAAAGGGAAAGCAGCAAACTACCATTCTTGTTGGATTGGTATTGATGCAAACGTTTTCCCTCATCACCTCTTTCAGCGTACATGGTCCCCCATTTTGGTACACCATCTGCATATTGGACCCTTTTTTTACTGTTTATCAATTTTCCTTTTCTTATTGAATCTTGTCGGTTAAAAGTAAAGACTTCACCTTCTGCTGGGCTTGCAATATTTGATAGTGAAACTTACACAAAATCTTTGGTGAATGTAAGAAATCTAATCTAAGTGAGTAATGCAGGGGAAATTATTACATGTTAAAAATGAATCCCCGGTTTGAGGGAAGAGTGTTGGTTGGATGGCAACAGGTTTTTGCTTAGAGAAGAAAAGAAAGTGTTATAAATGAATTATTAATGAGAGTGGAACAACAACAGACAAGATGATGAGGGTTGTTGGACTTGGGAGATAAGATTCTGATGGAATTGACTCATAAAATATGATACATTGCAAGTGCATATTAATCAAAGATTGCCCCTCTAAACTTCAAACAGAATATTAATATCCTCCACATTATCTAACACAAGCCCACTAAGATAAATTCCACTTTCTTCTGTTTTGGATTGGATTCATACCTTCCTGTCTTTCTCTCCATTTTACTCTACAAAACATCATTTTCGACCACTATTCTTTACTTTTAAAAGCTACGTATCATGCTAAGTTTAAGTAACTAAATTTCTGTAATCTTATCCTTTTTCATTTTTAATTGTAGAGTCTACAGTGAATTCCCTCTTCAGAAAAAAATAGTAAAGAAATCAGTTGCATATCAAATCTCATTCTCTTGCTTTTCCCATTTAGGGAGGTTGCGAATGACTTTTATGAAATTTGATCTACCACAAGAATATCATCAACTTGGTATATGCAAAGCTATAAAGAACATTGTTTGACTTTATCAGTTAGTAGTGTTTAGTAAATACGTTTTTAAATACCTTGTGATTTAACCTTTTTCTAAGACTCTATATATACACGAAGATTCATTTTTTTAAAATATTAGTTTATAATTTAATTTTTTATATTTATTTTCATTTTAATCCTTAAAATATTTTTTTTTTATGTAAAGCATGATCTTTATTGTATATTTATTTTTTTACGTAATCTGTTTAAACATGCAACAATTACAGATACTCAGACGGAGAAAAATGCAAAGATCGTAAAAAGATTATTTACGATTTGGTTATATATGATTTGGCTGTATGCATTTCGTAATTAACGTTGTCGTTTTCATCCAATCACAGTATTCATATAATACAACATATTTCTCTAGACCTAATTCCAAGCAGTCTGTAAAATTATAAAGTAAACTGCTGATACTATTAAGCACTCACTTTCAAAAGCTAAAACATCATATATCTTTGAAATCCCTTTGATCTTTGTAATGTTTACAGTGCTAAATGGATGATGGATGATCAGATATGATAAAATTGAGGGAGAGAGAGAGAGAAAAGAAGTACTTTTTGTTGCATTGCATTACAGTCATTGACTGAGTCTTTGCCTTGTTTCATAAGATAAGCAGCTGCATAGGTTAGAAACACTGAGCAAACTGGCTAGGAGTTAGGACACAACAGCAACAAGTAAAACAAAACAAATCAAACAGCTCTATCAGTGTGTGTGTGTCTGTCTCAGTCAGACAAAGTCAAACATTTCAAACCTTCCACTTCCCAATCCATTTTCTATAATATATACCATAACACTTCTCCACTCTCCATATTCAGTGTTGTCTTCTTCACTTTCAAATCTTCTCTGACTTAAAAGCCA


Gene Sequence:
>Vu_02879(+)
ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTCAAAAGGGGTCCTTGGTCTCCCGAAGAAGATGAAACCCTAAAAAACTATCTCAAGAAACATGGCACTGGTGGCAATTGGATAACTCTCCCACAAAAAGCAGGTTTATATATCCCTTTTTTCAATTAACTCTGCTACTTTCATTATTTTTATTTCTCTTTTCTTTAACTTTTAGGCCTAAAGCGGTGTGGGAAAAGTTGTCGTCTGAGATGGCTGAACTATCTCAGACCTCATATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAAGTTATCTGCAACCTTTATTCAACCATCGGAAGCAGGCAAGTTCATTCATTCTTTGTTTATAACTAAGACAAGATTGATTCTTTGGCACTCATAAGTTTGAAAGTAACTCTATATATAGTGCTAAAACCTTCAGTTTCCAAAGGGTACGTAGCGATTCTCGATAAAAATATGTGATCGTGATATATATTAAAACACTAATCTAGATTAACATGTTTTACAATGTTTTGTGTTGCTTTTTGATATCACATATGCTGTGGTTTTTGGGTTAGGTGGTCTCTTATTGCGGCTCAGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACGCTAAGTTAAAGAAAAAGTTTTTGGTAGCAAACACCAATGCCACTGTGGATACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCGAGCTGAAGACCGTGTCTTCGATCATGAGAACTCAGCCGAGTCTCGTGTTTTGGGTTTGGAGCGGACACACATTCCAGTTCCTTCACCATTGCCTTTAGGATCTAATGTCTCAGGTCTTGGCAGCAGCTGTAGTGTACCACTATCCAATGAAGTTTCAGTCGTTTCAAACTCAACATCCTTTGCGAAACAGGAAAACCAGACTCAATGGTTTGGCTATGATGACGATATTGAAGGTCAAAATGAAGCACTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCACAAGAAAAAAGCAGCGAAATTGCGCCATCATTTGGCTAA

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