Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02878 LG1 41575023 41576552 PREDICTED: zinc finger CCCH domain-containing protein 20-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   plasma membrane, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 41575507 missense_variant p.Gly145Trp
C/T 41575857 synonymous_variant p.Ser261Ser
A/T 41576073 missense_variant p.Lys333Asn
G/A 41576195 3_prime_UTR_variant
G/T 41576394 3_prime_UTR_variant
G/A 41576406 3_prime_UTR_variant
G/A 41576420 3_prime_UTR_variant
A/G 41576450 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02878.1
MMLGETNRANPTVHVPPWPLIHQSSPEIFSPYTANADYSPYSLQEALSALQHYDSTDAESDSDVPSLESDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSKTAAPFVSSPGSLSPPVESPPMSPMTRSGSLSVNEMVASLRNLQLGKIKSLPSSWNVIGSPGFGSPRGPVIRPGFISLPSTPTQAPVRGGVNYFDLWERSCEEEPVMERVESGRNIRARMFEKLSKENVLDGPGSGEPVVPDVGWVSELVSR*


CDS Sequence:
>Vu_02878.1
ATGATGTTGGGGGAGACGAACCGCGCAAACCCAACCGTACACGTCCCACCGTGGCCGCTCATCCACCAATCCTCGCCGGAGATCTTTTCACCGTACACCGCCAATGCTGATTACTCTCCGTACTCTCTGCAAGAAGCTCTCAGCGCCCTTCAGCACTACGACTCCACTGATGCAGAGTCAGACTCTGATGTTCCTTCCCTGGAATCGGACGTTCCGGTTGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGTTCGGCCTGCCCCGATTTTCGCAAGGGAAGTTGCAAGAAAGGTGACGCATGCGAGTACGCGCACGGGGTTTTCGAGTGCTGGCTCCATCCCGCTCGTTACCGCACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCATACGCCGGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGGTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGACGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGTTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCTCCGATGACTCGTTCCGGGTCTTTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCCTTGCCTTCTTCCTGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCAGTGATCCGACCCGGGTTCATCAGTCTTCCTTCGACCCCAACCCAGGCTCCGGTTCGCGGTGGGGTGAATTACTTTGACCTGTGGGAGCGGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGAAACATAAGAGCGAGGATGTTCGAGAAGTTGAGCAAAGAGAACGTTCTTGACGGGCCGGGTTCGGGTGAGCCCGTGGTCCCGGATGTCGGGTGGGTCTCGGAGCTTGTGAGTCGCTGA


Promoter Sequence:
>Vu_02878::LG1:41573023-41575023(+)
TTAATTTAACATTTTTACCTGGTGGTATATCTTGGAAGAAAGTGGTTCTTACCCAGTGGTCATAAAAAATAATGGTGTAGTCGAATATAAGACAGAGACAAAACACAAAATAGTAATAATATCTATCCCAATGATAAAGACAAAATGGACGATTGTGAGGTAATTGAAACGATAAGATCGACAAGGTAAGGGGCCAAAATCACTATTCATTTGAAAGTCAAGTATTGGACTTTATATCATATGCCCATAATGTCCACAAAATTAATTTTATGCATTTTTCTTCATACCAAGGAAAATCAAAACATACCAAAGTTTTTGTAGATAACATAACGGAATAATTAATGGATAAGAAATAAAGTTAAGTTTAATTAAAATTATAAAATTAAATTATAAAATTGTTTTATATTAAATTGATATAAAATTTTAATATATTTTTTATATAAAAATATATATTTTAAATATAAAATTAAATATTAACAAATGATTCAACAGTGAATGACATAATATATTTAACAAATAACGGTTTTTTATATAAATAATATAATAATTAAATAACAAACTCTGTTAAAATAAATTTTATTTAATTTATAACATTAATATCATATTAAAAAATAGACTTCAAACTTAACTTAATCATAAAACTGATTAGACGAAGATTTTATCAATTTATATACTATAAACTCGTTTTTTAATATATTATAAACTTTGTTATATTTATTGGGTGTAAAATTTTCAATACACTATCCATACAAGTGATATATATTTAATCATGATATTTATACCATACCTAACTCAATTCTTTTGTAACCCTTATACATTTGTAAAGAATGTGTTGAAAAATAATGTGAGAAAATCCCGAAAAATAAGCATAAATGACTACTGCAGTGTATGGATAAGGTGAAGAAATGAAAAATGACAGTAAAAAGAAATTTGGGAACTGTGATGATAGCAATAAACGTTACTTTCCAAGTGTTGATGCCTCCCCTAGAAATTGAATAACATGCCTACCCACATTTAACTCTCACACGACTTCAATGCCACTGCATTAAACCATTTTGTTTTATCTCTCTTCACTCATTTAACTATTTATTTTCTTCACCCATAAACTATGCATAAATTAAATACTCTTTTTCTTACTAAATATTGACTTCGATATCTTTTTAGTCTTTAAAATTATTGAAATTCAAAATTAGTTTCTATTGGGTAAGATTTCTTTTTTACATTAATATTAAGAGGTTGATTGACAGAAATTAAAAGATTTAGAATATATCTAATCGTGTATGCACCTATGGTCGAGAAAAATGGAGACAAGAACACATCACACTTAACATTTGATTACATTACGAAACAAGTTTGCACTATTGTACTAGTAGTCGATTGACTATGTGGTAGACAAGTTGGTAATTAGAACTTTATAAGATATGAAAAAAATTTATAAATATAATTTCAAGTTTTCAATTTGATTTTCTCCTAACATAACTAACTTGTTTAATTTAATCAGATGTCTAGTTGTAATAAAAAGGAAACTTTTTTTATTATAAATCTTCAAAATTGTCCGTAAATAAAGAAGGGGTGAAAGATTTATGAGAACTAAATTATGATTTAACATAGCACACATAATTAATAATATTAGGTTATTTTGAGATTTATTAATGTAGATGGGCGTGTCTTTTGGTAGGGAATGATAAGCTTCACTCTACTGCTTTGGGAAGAGAAGGAAGATACAAAGTGGTGACTAGGGGCAGCACATCAGAATCCAACGGCTCGTGCCAAGGCTTTCCTCGCATTAACACCTGTTCACATACGTGGCAAACGCAAACTGCGCGTCTGTCACACCGGCGTGGTGATGGAAGGAAAATCCCGCGTGAACTTTAACCGCAATGGAGTTCCGCTGGGTTCATTCATTTCCAAGCAAACCACGGTTAGCGTAAACCCAACCAGGGTTAAAGACATGTACTGAGGTAGTTTATAAAGAGACACTGACCGTGCCGGAAGAGACG


Gene Sequence:
>Vu_02878(+)
GTAAACATCTAATCCAAATAAAACCAAAACAACCTTCAAAGGCAACACAACCATGATGTTGGGGGAGACGAACCGCGCAAACCCAACCGTACACGTCCCACCGTGGCCGCTCATCCACCAATCCTCGCCGGAGATCTTTTCACCGTACACCGCCAATGCTGATTACTCTCCGTACTCTCTGCAAGAAGCTCTCAGCGCCCTTCAGCACTACGACTCCACTGATGCAGAGTCAGACTCTGATGTTCCTTCCCTGGAATCGGACGTTCCGGTTGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGTTCGGCCTGCCCCGATTTTCGCAAGGGAAGTTGCAAGAAAGGTGACGCATGCGAGTACGCGCACGGGGTTTTCGAGTGCTGGCTCCATCCCGCTCGTTACCGCACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCATACGCCGGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGGTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGACGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGTTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCTCCGATGACTCGTTCCGGGTCTTTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCCTTGCCTTCTTCCTGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCAGTGATCCGACCCGGGTTCATCAGTCTTCCTTCGACCCCAACCCAGGCTCCGGTTCGCGGTGGGGTGAATTACTTTGACCTGTGGGAGCGGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGAAACATAAGAGCGAGGATGTTCGAGAAGTTGAGCAAAGAGAACGTTCTTGACGGGCCGGGTTCGGGTGAGCCCGTGGTCCCGGATGTCGGGTGGGTCTCGGAGCTTGTGAGTCGCTGATTTCATTCTGCCACTGTTCCCTCGGCGTGTATAGAATACGGGGGAGAAGAAAAGGAAGAATGGTAGTGCGAGATTTATTTTGGAAGAAGAATCCACTTATGTTCTGTAAATAGCCTATTCTAAAGGTGTGGGTGAAGACAGTATAATGGTTTTTTGGGGGGACTTGTTGGACGATGAACAGGTGATTTTCAAGGATGAACATCCTAAGCATTTGTATAGGTAGCAGCGGATGATGAAGTGATATAGTTCCCGTGTCTTAATTACCGTGTTTATTTTCACTAATCTCATCTCATTCATGTATAAATTTAAAATATTTCTCATATCTTATGAACAATTCAAACCTCTGTCCTTTATCACTCCAAAATAAAATCTTTACACATGCCCTTATGTTTCCTTAT