Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02869 LG1 41486689 41488676 PREDICTED: leucine-rich repeat extensin-like protein 6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   shoot system development, response to jasmonic acid, shoot system development, tissue development, plant-type cell wall organization or biogenesis, response to jasmonic acid
Cellular Component   located in   extracellular region, extracellular region
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
C/A 41486744 3_prime_UTR_variant
A/G 41486781 3_prime_UTR_variant
A/T 41486807 3_prime_UTR_variant
A/G 41486812 3_prime_UTR_variant
A/G 41486816 3_prime_UTR_variant
A/G 41486852 3_prime_UTR_variant
G/A 41486857 3_prime_UTR_variant
A/G 41486962 3_prime_UTR_variant
T/C 41486964 3_prime_UTR_variant
G/T 41487013 3_prime_UTR_variant
G/C 41487084 3_prime_UTR_variant
T/C 41487183 3_prime_UTR_variant
A/C 41487601 synonymous_variant p.Val348Val
T/C 41487609 missense_variant p.Ile346Val
T/G 41487685 synonymous_variant p.Thr320Thr
G/A 41487784 synonymous_variant p.Ile287Ile
A/G 41487892 synonymous_variant p.Asp251Asp
C/G 41487968 missense_variant p.Ser226Thr
T/A 41488049 missense_variant p.Asp199Val
G/A 41488063 synonymous_variant p.Pro194Pro
G/C 41488149 missense_variant p.Gln166Glu
G/C 41488150 synonymous_variant p.Leu165Leu
T/A 41488169 missense_variant p.Asp159Val
C/T 41488175 missense_variant p.Gly157Glu
C/T 41488176 missense_variant p.Gly157Arg
A/C 41488402 synonymous_variant p.Gly81Gly
C/T 41488406 missense_variant p.Gly80Glu
T/C 41488595 missense_variant p.Asn17Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02869.1
MKTPLLYHPLLSLRCSNFIWTTSKAFHQTIQLQMENTWILTFHLLLLLLLHSNAAKGAINVGVGVGGRGGIGVGIGIGNGGSGGNTAGPSGSSVSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGIFCSNSQDENGIATTASTESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNTNRLSGSVPESFRDLTSLQELDLSNNQLSGPFPTAILSMPSLVYLDLRYNDFSGQLPDELFNKKLDAIFLNNNNFGGEIPENLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGELSDVVCSLRSLLNLTVAHNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNQANSSSSSP*


CDS Sequence:
>Vu_02869.1
ATGAAGACCCCATTACTGTACCACCCTCTCCTCTCCCTTCGATGTAGCAACTTTATTTGGACAACCTCAAAAGCCTTTCATCAAACAATTCAGCTACAAATGGAGAACACCTGGATCCTCACTTTTCACCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGGTGTCGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGTGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGAGAATGGAATTGCCACAACAGCATCAACCGAGTCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTATCTTTGCTATCAGATATCACTCTTTTCCATCTAAACACCAACAGGCTTTCTGGCTCAGTTCCCGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCATTCTGTCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACGACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACAGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCAAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTGTTGAATCTAACTGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATACCTGGAAGGAATATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGAGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCAAGCAAACTCATCTTCCTCTTCTCCCTGA


Promoter Sequence:
>Vu_02869::LG1:41488676-41490676(-)
TTCATTTTTATCTAACATGACACTGAGAACGATCATGTCCCGTATTAATTTCTTAAAGTGTGGTTTAGAATAGTTGAAGGGAATGAATACCTAACTCAAGAGCATGCATATTATAGACCAATTTTACCTGGGGTGGGTTGTAGGTGCCATCATCGTTATTGTGAAATCTACTGCTACTATATAAGCTTGGTGGCTACGTTTTGAAAACGCAACTACTTACTACTCAAACATCCTTTTATGCAGTGGAGTGGATGGAGAATTCGGAAGAGGAATCTTTCTTTTTTTCTTCAATCTTCTTTTATTTCTTATCTTTTTCTCCTTTTTCTCAAGTGGAACAATACTCCATGCCCAACCATAGAACTTGGAAACTAGCTGTTCCATATTAGTCTTCAAAATGGTGTGCGCTCTTCTGTGCTCACCCTTTTCACACCATCACCATTATTCACATCCAAACTAGCTGCCTTCTGTCGTTTGATCATCTGCTTCAAACTTTGAATTCTGATCAAACTGTCGAAAAAAAAAAGAATATTTATAATGTGTGTTTCATGCCTCATTATTCACTTCAAAAGTATAAGAAACATGTTTTGACTGTTTCAACATAACATAATTATCTTAAATTGGGTATTGCAAGATCACTTTTTTCTAATCATTGATTCGTGGACTGTTCTCCCATTATTTAGGTAAGGGAACTGAACTGCACATCCCACTAACTTTTGTTGAACTGTACATATTTCAGCCAAATACAGAATTCAACAAAACCATACTCCTCCACTTTGGATCAACCCTAGTTGCTGCTAGCGATAAACCGTGTCCGAATTCTTTCACACCAATAATTAGTGTTGTTGTAGCATGTGGTTGTGGATGTTTTTGCAGAGCACGCGTTGGTAAACTTGTTTTGATTATTTTAAGACTTTTCCTTTTCTAAGTTTTTGATTGCATGACGAGGATGTTTTTAAAGAATAATAACACATTACTATCATTGGAAAGTTAAGAGCTAGAAATTAAGAGACAACTTTTCACGACCGTTGGCTGGTAGCTACCATCTGCCAACCATTTATCGCAACTTCAATTCCCTCTACCAGACCTGCTGCTACAACTACAAGGACAGATATCTCTACTTTTTCTTCTAATTGTTGGTGGAAGTGTGAAGGATTCGACTTCTTGATGGGAGCTAACTTAACCAAACCTATGTGATGTATTAATTATGCCACAGTGTCATAAAGAAGGATTTGTTTTGTTGTGCAAGTAATCAAACAGGACTTTGGTCTTGGCGTCTCTTTCTAGCTCAACTAAGTCAAGTGTGAAGAAACAGAATAATCAATGATCATGATGATATTGATAGATGATTAGCCCTTGTTTTTCATGACATCTTTTTGACTAGTTTATCAAATTTTTTCCACCTGGTAACCCTCTTGTTTTCTTACCCTTAAATGATTAGTTTCTTTATTTGTTTGAAACACATCAACACTAAGAAAATAAAAAGGTCTTATACAAATTCAGAAAACATAGGTTATGTCTACTATCTCCATCTCAAACTTAAATGAAAGCGTAGCCGTAACATTATATTGATGGTTGTCTGCGCAATCGACCAGCTTTTCATTAAATTTGTAAGCTAGTAAGCAACCTAACATATACACTACACTCTATTTATTTCTTAAAATAATAGATACATTTTTATTCATGTTTGGACATGAGTTCTCCTTATTTAATCAGATGTTTTTAGTTTGTTTAAACAAATACATTCGATTTTAATTAGTTAATTAATTGAATAATTGCAACCAAAATGTTTAATCTGAAATCATTTTTCATTGGAAGTTAGACACAAATATAAAAAGGCAACGGACGTCAGCTCCTCTGCTTTTATTCAAAGCTAAGCTCAAACGCATGTTATATAATCTGATCACTAAGAATTTTAGCAACCACTTTTCACTCCGTAGAGAAACAAGTGGGAAAAAGACACTGATGAAATAATAAAAATAACTTAATTGAAGAATTTAAGT


Gene Sequence:
>Vu_02869(-)
GAGTTATGAGTGATTCCAAAAGAAAATGGTGAATGAAGACCCCATTACTGTACCACCCTCTCCTCTCCCTTCGATGTAGCAACTTTATTTGGACAACCTCAAAAGCCTTTCATCAAACAATTCAGCTACAAATGGAGAACACCTGGATCCTCACTTTTCACCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGGTGTCGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGTGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGAGAATGGAATTGCCACAACAGCATCAACCGAGTCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTATCTTTGCTATCAGATATCACTCTTTTCCATCTAAACACCAACAGGCTTTCTGGCTCAGTTCCCGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCATTCTGTCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACGACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACAGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCAAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTGTTGAATCTAACTGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATACCTGGAAGGAATATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGAGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCAAGCAAACTCATCTTCCTCTTCTCCCTGATACAGGTTGGTCCTTAATACTACCAAGTTAATTCGTAATCACACCCTGCTAATTTTATTCTTGGTTCTTTCAGTATACGTGTTAGTATCTTATTATTATACTTGGCCCGCACGGATAAGATTCACCTTGATTTTGTGGGCAACCAGCAATGAGAAAGATCGATGTGTTAACAAACAAGATAATTTATATGTCACGTGGCATGGTTCCTTGATTTGTACAACCATCACGGGTTTTTAAGATTGTGTATTCAGTATTCTGCTACGTTTTTTCTCCTCATAAATATCACGAACCTCCTGTTTCATTGCTTGTTTTCTGACTACTGAATCTTCACACCACAGTCATGCTATAGACTACTTAACCAGATTCACAAGTCACCTACATCATGCAAGCTACATTCTTTTGTTCCAGTTGTTCTCTCTAGCTATCGATGTATCGTTATTATACATCTGGTCAGTTTTATGCTTTATCTCTAACATGGATCACATAGCAAAACCACGATCATTAAAAATCTTCGGGCTAATAACTGATATCGTGTAAAGCAAGAAAATCCATGTAAATAATTATTTTTGTTATATATTATGAATTCGTTGAAGC