Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02826 LG1 41129938 41132777 PREDICTED: protein phosphatase 1 regulatory subunit 7
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, protein localization to nucleus
Cellular Component   is active in   cytoplasm
Cellular Component   located in   nucleus, nucleus, cytoplasm
Molecular Function   enables   protein binding, protein binding
Pathway   B 09181 Protein families: metabolism   C 01009 Protein phosphatases and associated proteins [BR:ko01009]
SNP Position Effect Amino acid change
T/A 41130115 3_prime_UTR_variant
C/T 41130119 3_prime_UTR_variant
A/C 41130558 3_prime_UTR_variant
C/T 41130799 3_prime_UTR_variant
G/A 41130944 missense_variant p.Leu319Phe
A/T 41130977 missense_variant p.Phe308Ile
G/T 41131122 upstream_gene_variant
T/G 41131409 upstream_gene_variant
A/T 41131468 upstream_gene_variant
T/C 41131563 upstream_gene_variant
G/A 41131593 upstream_gene_variant
G/A 41131597 upstream_gene_variant
A/T 41131737 upstream_gene_variant
A/C 41131781 upstream_gene_variant
A/C 41131792 upstream_gene_variant
A/T 41131931 missense_variant p.Cys201Ser
G/A 41132024 splice_region_variant&intron_variant
A/T 41132041 upstream_gene_variant
A/T 41132103 splice_region_variant&intron_variant
A/G 41132119 synonymous_variant p.Asn167Asn
G/T 41132128 synonymous_variant p.Leu164Leu
G/T 41132375 upstream_gene_variant
T/A 41132392 upstream_gene_variant
C/T 41132397 upstream_gene_variant
C/T 41132400 upstream_gene_variant
G/A 41132750 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02826.1
MEESVESIAVPDHDEDDPSSTILDLSSYQLHDLDSVELPPTLTELDLTANRLSTLDPRIANLSHLKKLSLRQNLVTDNAVLPLSSWSALASLEELVLRDNQLRNIPDVSIFQKLLVFDVSFNEISSLHGCAKVSDTLKELYVSMNQVLKIEEIDHFHQLQILELGSNKLRVMENLQSLTNLQQLWLGRNRIKVVNLCGLNCIKKISLQSNRLTSMTGFEGCIALEELYLSHNGISKMEGLSTLVNLRVLDVSSNKLTSVDDITNLTQLEDLWLNDNQIASLEGIAEAVVGCREKLTTIYLEHNPCAKSPNYTAFLRETFPNIEQIDSYVFS*

>Vu_02826.2
MEESVESIAVPDHDEDDPSSTILDLSSYQLHDLDSVELPPTLTELDLTANRLSTLDPRIANLSHLKKLSLRQNLVTDNAVLPLSSWSALASLEELVLRDNQLRNIPDVSIFQKLLVFDVSFNEISSLHGCAKVSDTLKELYVSMNQVLKIEEIDHFHQLQILELGSNKLRVMENLQSLTNLQQLWLGRNRIKVVNLCGLNCIKKISLQSNRLTSMTGFEGCIALEELYLSHNGISKMEGLSTLVNLRVLDVSSNKLTSVDDITNLTQLEDLWLNDNQIASLEGIAEAVVGCREKLTTIYLEHNPCVRFLFSVTCLIHFLLETWSITHVVVLCIIL*


CDS Sequence:
>Vu_02826.1
ATGGAGGAGTCGGTAGAATCAATAGCGGTTCCGGATCACGACGAAGACGATCCTTCATCAACGATTTTGGATCTCAGCAGTTACCAGCTCCACGACCTTGACTCGGTCGAGTTGCCTCCCACTCTCACCGAGTTGGACCTCACCGCGAATCGCTTGTCCACGCTGGACCCGCGCATAGCCAACCTCTCCCATCTTAAGAAGCTCTCACTGCGCCAGAACCTCGTCACCGACAACGCCGTTCTCCCTCTCTCTTCCTGGAGCGCCCTCGCGTCGCTCGAGGAGCTTGTGCTGCGGGATAATCAATTGAGGAACATTCCTGACGTCAGCATATTCCAGAAGCTTCTGGTATTCGATGTTTCGTTCAACGAGATTAGTTCGCTACACGGCTGTGCCAAGGTCTCCGATACGCTCAAGGAACTCTACGTGTCCATGAATCAAGTTTTGAAGATCGAGGAGATCGACCACTTCCATCAGCTGCAGATTCTTGAACTCGGCTCCAATAAATTGCGGGTAATGGAGAATTTGCAGAGCCTTACGAATTTGCAGCAGCTGTGGCTCGGTCGGAATCGAATTAAAGTTGTAAATCTGTGTGGTCTCAATTGTATTAAGAAAATTAGTTTGCAAAGCAATCGTCTCACTTCAATGACGGGTTTTGAGGGCTGCATAGCTCTAGAAGAACTATACTTGAGCCATAATGGTATTTCAAAAATGGAAGGGTTGTCGACATTAGTCAATCTCCGGGTTTTAGATGTATCGTCAAATAAGTTAACATCAGTGGATGACATTACGAACCTGACGCAATTGGAAGATCTGTGGCTTAACGACAACCAAATAGCATCACTTGAAGGAATTGCTGAGGCTGTTGTTGGTTGTAGAGAGAAGCTTACAACCATCTACCTGGAGCATAACCCATGTGCTAAATCACCCAACTATACTGCATTCCTCAGGGAAACATTCCCCAACATCGAACAAATTGATTCATATGTATTTTCTTAG

>Vu_02826.2
ATGGAGGAGTCGGTAGAATCAATAGCGGTTCCGGATCACGACGAAGACGATCCTTCATCAACGATTTTGGATCTCAGCAGTTACCAGCTCCACGACCTTGACTCGGTCGAGTTGCCTCCCACTCTCACCGAGTTGGACCTCACCGCGAATCGCTTGTCCACGCTGGACCCGCGCATAGCCAACCTCTCCCATCTTAAGAAGCTCTCACTGCGCCAGAACCTCGTCACCGACAACGCCGTTCTCCCTCTCTCTTCCTGGAGCGCCCTCGCGTCGCTCGAGGAGCTTGTGCTGCGGGATAATCAATTGAGGAACATTCCTGACGTCAGCATATTCCAGAAGCTTCTGGTATTCGATGTTTCGTTCAACGAGATTAGTTCGCTACACGGCTGTGCCAAGGTCTCCGATACGCTCAAGGAACTCTACGTGTCCATGAATCAAGTTTTGAAGATCGAGGAGATCGACCACTTCCATCAGCTGCAGATTCTTGAACTCGGCTCCAATAAATTGCGGGTAATGGAGAATTTGCAGAGCCTTACGAATTTGCAGCAGCTGTGGCTCGGTCGGAATCGAATTAAAGTTGTAAATCTGTGTGGTCTCAATTGTATTAAGAAAATTAGTTTGCAAAGCAATCGTCTCACTTCAATGACGGGTTTTGAGGGCTGCATAGCTCTAGAAGAACTATACTTGAGCCATAATGGTATTTCAAAAATGGAAGGGTTGTCGACATTAGTCAATCTCCGGGTTTTAGATGTATCGTCAAATAAGTTAACATCAGTGGATGACATTACGAACCTGACGCAATTGGAAGATCTGTGGCTTAACGACAACCAAATAGCATCACTTGAAGGAATTGCTGAGGCTGTTGTTGGTTGTAGAGAGAAGCTTACAACCATCTACCTGGAGCATAACCCATGTGTACGGTTCCTTTTTAGTGTAACGTGTTTGATTCATTTTCTTCTTGAAACCTGGAGCATAACCCATGTTGTTGTTTTATGCATTATACTATGA


Promoter Sequence:
>Vu_02826::LG1:41132777-41134777(-)
TGCATCATAAGGCTGAATTCGGTATAAGTTTAACAGTCATATCTGCAGATCACGCAAGAATAAGATTCTCAATCCTCAGTTACAAAGACTAGATTATAACCTTGCAATATGAAAGCTTAAACTAAAAATCAACTTATTCTGTAATTAACAACAGAGAATTTACAGATCAAAATTTCTCTACTCTCTGGTGAGCTATCCATACCTTTAACTGGGTCTTCCCCTATCTAACTTGCCCCATTAACACAAAAATAATGGTTATGGAAACATCTTCTGTTTATGGAGTATACATTATTGAAAAATGAAAACATCAAATTGCAAGTCATGGTCAATACAGGCAAAACATTTAGTGTAAATTACTGATGTTTAAAAAGAGTATCTTCAATTTGAATTAGTTGTCAGGCTATAAGCAGGAACCTTAGCAAGTTTTCCTTCTTCCATTACCGATCTTATTCTCTCCACCTCCTTCCACAAGCCTCTATTAGCATAGATATTAGACAACACCACGTAAACCCCATCACTCCAAGGTTCCAGTTCTTGCAAATGCTTAGCTACCCACTCCGCCATGTCCACATTCCCATATTTTTCACACGCACCCATCAAACACCCCCACACTACCGAGTTTGGCTTCATAGGCATCTGCTCCACCATTCTTCTGGCATCCTCAAGCAATCCAGCTCGACCCAGAAGGTCCACCATGCATCCATAATGCTGTAATTGGGGTGCCATGCCATAAACATTCTTCATCATATCAAAATAAAATCTCCCTTCTCGAACTGCCCCACCATGCACACAGGCACTAAGAACTCCAATAAAAGTCACATAATTTGGCCTAACCCCAGCCTCCCTCATATGACAGAAGCATTCCAGTGCTTCCCTCACATATCCATGCATCCCATACACCACGATCATGGACGTCCACGACGACACATTTCGTTCCTCCATAGTTGCAAAAACCTTGTAAGCCAGGTCCAGCCGCCCACACTTCCCATACATATCAATCAGCGAATTCAACATCAAAACATCAGTCCTCTCACCAGCTTCAGCCTGGAAAACACATTTATGCACCTGGAGGGCCAGGTTGAGGTCTCCAATCTTCCCACAAGCGGAAGTCACACTAATCATGGTCAACCCATCCGGCGCAAATCCCCGCCTCTTCATATCAAGGAATACGCCGATCGCATCCCGGACAAGACCAGCTTGGGAAAGCCCACCTATTACAGCATTCCAAGAACCAAGCTTCGGGTCAGGATTTTCATCAAATACCATTCGGGCACTTCCAAACTCGCCAGCTTTAAAATACAAACTTAAAAATCCAGTTTCACAGAACTCGTTACATTGCAGTCCAATCTTGATACCAACTGAGTGAACCTGTTTCCCGAGCTTAACATCAAAAGTTTGGGAGACTGCCTTCAGAACAATGGGAAGGGTATAACAATCGGGCAAAACCCCATTCCCCAACATTAAAACATAGATGCGAAGTGCATTACGTGGAGCCTCTAGCCTGGTGTATGATCTTATAATATTGTTCCAATTAAATGGCGCCGGATTGGAGTTAAAAAACTGCGTCCTTAGAACGTGGGCATACAATCGATTCAGTTCCTGTACAGTAGAACAATTACACGAATAAGTAGCTACCAACGCTACAAGGTCGCTTCCTGAATAATCCAGAAGAGATCGAAACGCAGAGTTTTGGGTAGAGAAACAACGACGACGACGAAGGGGGAACGCGAGTTGGAAGAACTTGCGCATAGACATAATAGTGTCCTTGCGCTGCTACATGCTATATGCATGGCAAGGCATGTGCGCCGAAAAAACAAGCCTTTTCTTTCGTTTACATTGAGCGAGGTTTTCAAAAACCAAGGCTAAGGGCATTTTAGGTAGTATGCAATTATAAAGAATGTAGGGCAAGGCCCTAAAAAAATAGCAGGCCTCATTCCAGGCCCAGCCCAGATGGCCCGACAGGTATAAAAAAATATTAAACAGTTTGAGTTGCATTTTGC


Gene Sequence:
>Vu_02826(-)
AGGGCAGGGCAAGGCAATGTGTTCTTTCGGTTGAAGCAGAAAGTGAAATTGGAATCTTCTTTAATTGGAAGATGGAGGAGTCGGTAGAATCAATAGCGGTTCCGGATCACGACGAAGACGATCCTTCATCAACGATTTTGGATCTCAGCAGTTACCAGCTCCACGACCTTGACTCGGTCGAGTTGCCTCCCACTCTCACCGAGTTGGACCTCACCGCGAATCGCTTGTCCACGCTGGACCCGCGCATAGCCAACCTCTCCCATCTTAAGAAGCTCTCACTGCGCCAGAACCTCGTCACCGACAACGCCGTTCTCCCTCTCTCTTCCTGGAGCGCCCTCGCGTCGCTCGAGGTATGTTGTCGCTTAAGCCTCTGTTTGGATGGATGAATAACATTTTCTCATACGCGTTTGTTTTAATCTCTTTTTTTCTACATGCAGGAGCTTGTGCTGCGGGATAATCAATTGAGGAACATTCCTGACGTCAGCATATTCCAGAAGCTTCTGGTATTCGATGTTTCGTTCAACGAGATTAGTTCGCTACACGGCTGTGCCAAGGTCTCCGATACGCTCAAGGAACTCTACGTGTCCATGAATCAAGTTTTGAAGATCGAGGAGATCGACCACTTCCATCAGCTGCAGATTCTTGAACTCGGCTCCAATAAATTGCGGGTGTGTTGAGGTTAACGGTGTTAAGTTACCGGGTCTGTGCTTTGTTTGTTCCAATGGGGTTTTTGATTTTTTTTTGTTTGTGATTCAGGTAATGGAGAATTTGCAGAGCCTTACGAATTTGCAGCAGCTGTGGCTCGGTCGGAATCGAATTAAAGTTGTAAATCTGTGTGGTCTCAATTGTATTAAGAAAATTAGTTTGCAAAGCAATCGTCTCACTTCAATGACGGGTTTTGAGGTATGCTCTCTACCGATGGGGTTGCCCTCAATTTGATTCCACAAATTTATTCTTTCAGGGTAAACTATTCATTTGTTCTCTGTAGTTCTGATTTTAAGTTTTAGTCTCCATACAAAAAAATTATTAAGTTTTAGTTCTTATATGTTTTTTTGTGACTATATAACACCAGCAGAATTAACTTTGTGCATTTGTAGGAACTAAACCTTTTTCTCGTGTAGGAATTAAAACATAAGATGAAGATAAATAGAAGGACTATGTGAATAGTAGGTTAACGCCCCCACCACAAACGCACCCCTTTTTTAGGGTAAAAAAACTATGCATTGATTATTTAAAATGGTTTTGCACTTTCAAACAATCACAAAACCACCATGTTGGTAAGTTTGTTGATTTTTATAATAATCTTAAATGTCATTCAATTGGTAATTTGTGATTTTGATCTAAGTGTAAAACTGTTTTACATCTGTGAATAACCACTAAACTCTTTATTATTAATTTAGAACTTTATAGTTGCTAACCTTCATTCTGGGATGCAGGGCTGCATAGCTCTAGAAGAACTATACTTGAGCCATAATGGTATTTCAAAAATGGAAGGGTTGTCGACATTAGTCAATCTCCGGGTTTTAGATGTATCGTCAAATAAGTTAACATCAGTGGATGACATTACGAACCTGACGCAGTATGTCTGGTTCTCCGTTGGTCCATCTTTTTCCCTCCGCACAAATAACTTTTTAAAGACTTACGTCGGTAATTTCCTTGCCTTGTTTAATTTATTGCAGATTGGAAGATCTGTGGCTTAACGACAACCAAATAGCATCACTTGAAGGAATTGCTGAGGCTGTTGTTGGTTGTAGAGAGAAGCTTACAACCATCTACCTGGAGCATAACCCATGTGTACGGTTCCTTTTTAGTGTAACGTGTTTGATTCATTTTCTTCTTGAAACCTGGAGCATAACCCATGTTGTTGTTTTATGCATTATACTATGAGTTTTACTTTTTAATTAATCTTGTTAGGGAATTGTGTTGTGGACTATAAAATGGGAATAATCTTACTGAGTTTCATTTAGAAGCTCCCATTGCCACTATTCTATTTGTGGCTTTGACTGGATATAAATGAAGTCTCTGTAAAAAGCATAATTTATAAGTTGTACTGCTATATATTTTCACCATTGAGCCTTTCGACCCTGTTTGTTTGTTATTTTCCAAGCACTGGGTTTCTGGGAGGAAGCTTAATTTGACATTTATATTTATCCTTCAGTGACAGATTCCATGTTATTCCTTGTCTGATCTTTCTTCTTTAGGACTTCTCGGTATATGATTTACTTATTTAGGAACTAATCCTGCTTGTTTCTTTCAGGCTAAATCACCCAACTATACTGCATTCCTCAGGGAAACATTCCCCAACATCGAACAAATTGATTCATATGTATTTTCTTAGAAGTTTCTTGGCTTCAGCCTCTTTGAAATCAGTAGCTTTGAAGCTTTGTCCTTGCAGATCCATTTGTAAGTTCTGTATAGTTTGTATGCTGTCATTCTTAATAGTTGCGTTATAGGTTGCACTTTGATCATTTCTGTAATGTATGCAGGTTCCGCTTTGAAAGATTGATGATTTAGCTCCATCCACCTAATGAAGAGAACATGCTTACCAACCATTGGACAATATTGTGGCCTGAACATTTGTTACCTGTCGGATGAATATGCTTGTTATAAGTTACTTGTTTTGCAGACCACATTTTTTTTTATTTATATTTATTTTACGACCAATTTTTGAGAAGCATTGTAACGCATTATTGGTGTTGTTTATTATATTTCCTGCCACAGCTTGTGGTATGCAGAGGTGTAGATTAATGATCGTCCAGAGATTCATTGAAATTTGTTTTACTGATTTCTTCTCCATAACAAGTTAATATTAATGGTCATTCTTCAAAACTCTTTTCCTC