Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02750	LG1	40442140	40443719	PREDICTED: zinc finger protein CONSTANS-LIKE 16	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity, zinc ion binding

SNP	Position	Effect
C/T	40442522	splice_acceptor_variant&intron_variant
C/A	40442551	upstream_gene_variant
G/T	40442573	upstream_gene_variant
A/T	40442584	upstream_gene_variant
A/T	40442603	upstream_gene_variant
T/C	40442621	upstream_gene_variant
C/A	40442652	upstream_gene_variant
A/T	40442708	upstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02750.1

MRDMKDAGALGAKTARACDSCISRRARWFCAADNAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPELGREEQEPVVVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLDKEDDEISERVGGGVQGAMAKVKDEEDVDGDVACYLESVFDMTNDDAFHWNSIESVLSDAREKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGYDFCLGLSGVDGDVRALRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ*

CDS Sequence:
>Vu_02750.1

ATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCCAAGGTAACCACCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAAGGGAAGAACAAGAACCTGTGGTTGTGGATAATGACGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAAATAAGTGAGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATGTTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATGCACGGGAAAAGGAGTGTGTGGTGGCGAGTGACGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTGAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCCTGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGATGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGA

Promoter Sequence:
>Vu_02750::LG1:40443719-40445719(-)

GGTAATTAAGAAGCTCAAAATTATTCCGAAAATTCGTTATTAAATGCATGCATTTCTGACAGTTTATTGAAAAACCTTCACAAATAACCTGGTTTAATAGATTCTGAAACAATGCTCCATTTCCGAATTTGGTTATACATTCAGTTTTAGCCTTCCTTTCCATAAAAGGTGTAGATGACAAGATTATTAGTAGTAGTAAAAGAATTTCAAGGCAAAAACGCTGACATTGATGAGCAAAACGATATCTTCTCAGTTATGTCTATTTTTACCAATTAGCAGCGACATGTTTTTGCACGAATACCTTTCCTCCAGTTTCTGCGAACAATATCTGATCGATCAGTTCCATTCATGTTGACGTTGAATGAAAACAGGTGCCATAAAATAACTTTCTATCATTGTTCCATCAATTATCAAGATTTTGAAAAACCGCAATCACACATTGAAATTAACGTTATACTGAAATTCCTCGATATTTCAGCCTTTTATCCACACATGCCACGCGTTATTATAATACTGTACAACATAAAGTTTGTTTTGTACATGCTTGTGTCCCCCCACTTTCCCCAGTTAACTTAATTACATGATAGAATAGAGTGTATGTGAATGTTAATGTCAGAGTGTGCTTAAGATTGGAATTCGAACCATGATCTGTCTTTTCGTGAAAACTAGTCCATTCTATAACACTAAACTTCCATTGGTTGTAATTTATGGCCTCGGTATGAAGAAAATTTACTGGCCCCAGAAAAATATATATAATTCTAAGGTGAACTGTTCTTTGGACTGATTCTTAAAATGTCAACACTCGGCCTTCAAATATCTGTTACATCAAAATTGGCCTTTCTTGCAGTGAAGTTAAGAAGATTACTTACTCAAATAAAACTGCTTGGTAAAATTGACAATATAATTAAACTAACCATAGTTTAAATTTGAACTTGGTAGATAAGATATCAGTTTCTCCACTGGTGGGATCAGGTTATACAGTAATCTCTCTTCCTATACATAAGATTAGTGTTTACATTTGAAACAGAGAAAAAAATGATTAGACATGACAAATTAAAATTAATGGGTTTGTTGCTGAAAAAAAGGTCTGTCACTGATGTAAGACAAGTGGGAACAAGCAAGACAGAGTTCCTTGTTACTAAATTTGACTATATGTTTACAAACCATGCTTTAATTTATGGTTTAGATTTTCTGAAGCAGAAGTAGCAGCTCTAAAACTAAAAGTTAGTACAAAAATTAGTAACCAGAATGACAGATAAATTATTCAGACACCACTCAGCTTCTCTAATGGTTGTAAATGCACTGTGACTAAGACAAGAAATGGGTAGAAGGCAACCTCTGGTGAGGAGAAAGCAACATCGAGGTGGGGACCACAAATTGAAAATTTAATGTTCTACCAGGAATTATTGAATTATAAAAGCAAGACAACAAAAAGGGTCACGATCAAATTTTAATACAAAACTCACACTAACCCCAGTAGAGTAGTAGACCCAAAACCAAATGGGTCCATGAGAAATCCCATAATCAGAAAGGGAACCAATGGGAATTCAGAGAACAAGATGAACATCAAATCTCCAGCCAATAAACACTGGGATGAGGCCAGATGGTAGGGCCAAAATCCCCCACTAGTAAATTACCAAAAGTGCATGGCCAGAGAGGGAGAGCACCCTATCGAGTAAGAGAAAGTTTGATGTAACATGGTTAACAGATAATTTGTCTTTTAATCATTTGATGAGAAGTTTAATCTTTAAGTTTGTATATATATACAGGAACATTTATAAGAAAGATAACCTTTTTTCTAAAAAAAAACCAGTCTCTTAAATAAATCCTTCTACATTAAAAGACTGCGTTTTTTTTCTAAAATACCTCAGACAAAACGAAAATAGACAGACCCCACTGCCACACCACGCTGTCAAGTCTGAACACACACTAACAATAATTGAACCATTTTCCTATCTGATTCTGAGCAAATAAATATATGAAAAGCATCTCAACATTCC

Gene Sequence:

>Vu_02750(-)

ATTGTTACTTTCATTTCAAACTTCACAAACCAAAAAATAGCAACGATTTTCCACGATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCCAAGGTAACCACCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAAGGGAAGAACAAGAACCTGTGGTTGTGGATAATGACGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAAATAAGTGAGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATGTTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATGCACGGGAAAAGGAGTGTGTGGTGGCGAGTGACGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTGAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCCTGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGTACTACCTCTACTTCTTGTTAATTTTCATCTTTTACATGAATTACGTTTGTATGTTCAGATTAAAATTTGAAAAGTTAAGTTTGAATTAATGTTATTTTGGAAACGGGGTTTGCAAATTTTGCTTTTTGAAAGGGTGTTGTAGGACTCTCAAATGAAAACCAAACGTTCCTTTCATCTCTTTGAGTAAAATGCTAGCAATTATGCTCTTTACATCTTGCATGTGTGAGCTGTGGTTGAGATGTGATTATTTATTATTTTTCAGGGTCTGAGTGGTGTAGATGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGACATCTATCAGTTAACGGATCCATCTTTGCTATTTCTGCAAATTTGGATCAATACTTGGTTTGGCTATACATATATAGCCTGTATTATATTAAACAAGTAATAATATTACTGGGCAGTCTTAATTTTACTAGACTTGTTGCTTGGGATATTTCTG