Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02741 LG1 40334207 40335685 PREDICTED: transcription factor MYB21-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of transcription, DNA-templated, gibberellin biosynthetic process, regulation of transcription, DNA-templated, gibberellin biosynthetic process, negative regulation of gibberellin biosynthetic process, root morphogenesis, regulation of transcription, DNA-templated, cellular response to phosphate starvation, negative regulation of transcription, DNA-templated, gibberellin biosynthetic process, cellular response to phosphate starvation, regulation of transcription, DNA-templated, negative regulation of gibberellin biosynthetic process, regulation of transcription, DNA-templated, negative regulation of gibberellin biosynthetic process, root morphogenesis, regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, cellular response to phosphate starvation, phosphate ion homeostasis, negative regulation of gibberellin biosynthetic process, negative regulation of gibberellin biosynthetic process, regulation of transcription, DNA-templated, cellular response to phosphate starvation, gibberellin biosynthetic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 40334226 3_prime_UTR_variant
T/C 40334233 3_prime_UTR_variant
G/A 40334282 3_prime_UTR_variant
T/C 40334292 3_prime_UTR_variant
A/T 40334394 missense_variant p.Phe233Ile
G/A 40334998 synonymous_variant p.Asn31Asn
C/T 40335044 missense_variant p.Cys16Tyr
A/C 40335052 missense_variant p.Phe13Leu
A/G 40335081 missense_variant p.Cys4Arg
T/C 40335125 5_prime_UTR_premature_start_codon_gain_variant
A/T 40335144 5_prime_UTR_variant
G/T 40335201 5_prime_UTR_variant
G/T 40335207 5_prime_UTR_variant
G/C 40335286 5_prime_UTR_premature_start_codon_gain_variant
T/G 40335415 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02741.1
MLVCYIYLDFYFFNDCRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIETDSREFQELVRRFWMPRLLQKVKESSSSSAMSIQNQAIPLVLDDGVSQQSTIGTIPWQGACVSMNGGSPTYMDQHEQNSDSEHNSGSCISFSESANMPKVAHHFGHTMDQFHSLSNNDFGTYSFDPYHVNDNAYEMETFKAATAKVAQDVQYPIADCQPAGTDWLSNDFACTIWNIDELWQFSKLQK*


CDS Sequence:
>Vu_02741.1
ATGCTTGTCTGCTACATTTATCTGGATTTCTATTTCTTTAATGACTGTAGGTGGTCAAAAATTGCACAGCATTTGCCCGGAAGAACAGACAACGAGATCAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCCAGACATTTGAAAATTGAGACTGACAGCAGAGAATTTCAAGAGCTTGTAAGGCGTTTTTGGATGCCAAGATTGCTTCAGAAGGTAAAAGAGTCATCGTCTTCTTCGGCCATGTCGATTCAGAATCAGGCAATTCCTTTGGTTCTTGATGATGGTGTTTCTCAACAGTCAACTATTGGGACCATACCATGGCAGGGAGCTTGCGTGAGTATGAATGGAGGTAGTCCCACTTATATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAGTGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATGCCAAAAGTGGCTCATCATTTTGGACACACCATGGACCAATTCCATTCCCTAAGCAACAATGACTTTGGCACTTACTCATTTGATCCTTATCATGTAAATGACAATGCATATGAGATGGAGACCTTCAAAGCAGCAACTGCAAAGGTGGCTCAGGATGTGCAATACCCAATTGCTGACTGTCAACCGGCAGGAACCGATTGGCTAAGCAACGATTTTGCATGTACCATTTGGAACATCGATGAACTGTGGCAGTTTAGCAAGTTACAAAAATAA


Promoter Sequence:
>Vu_02741::LG1:40335685-40337685(-)
TATTATTTTTATAAATTACGGGATAAACTATTCCATTTTTTTAAATTTGCCAAAAATGCAGAAATATAAATCATGTGCACAAGTCAAGGATAGCAGCAGTGAAAAATCGTAGCAAACTTTTCAATTTTCTCATGCAATTTTCATCATTTTTGTGGAGAAGAGGAATGAAAAATTAAGGACTAACGGGAACCACGTATTGAAGGCAAATCTTATAAGCGAAGGCCGACATCATGCGACAGGTGACAACCAATAAACGTAGAAAGTGGTCCTGTTCTAAGATCTCTAGCAGGCTTTCCATGCCGCCCCTTATGATGCCAACACCAATTATCACACGTTTTGAGTAAGTTTATTATTAATTTTTCTTATGTTCGGTCAAGCACGTTTCTGTCACTGTTATTACGACCAATCAGCGATTACTTCGTCTCATTTCAATGCCTTTCATCTCATATCATTTCTCATCACAATAATGGCTTCCTCAGATAAGGCTGCAGAAAGTGTTTCTCACATTGTAAATATCGATTCTGAAGTGAACCAGTTTTGCATATACATGTAATGTTATTCACGTTTGCCCTCTTGGCCGGTCTGTGTTTGATTCAGCAGATCAATCGTGTCAAAACTATAATTATTCTTCTTGTTAAACTGTCAAATCCTGTGTTAAACTGAGATAGTTTAACAACATTTTTTTATAACATTTTAATATATACGTGTGTTATTTTATGATTGATTCATATTAACGTTTATGATTATTACTGTTATTATTGATTGTGAATAATTTTGGATCAATGATACATAAAAAATGTTAAAATGTTGTTAAAGTTTCAATGTAAATATGATCTCCTTAAATTTTGAGTTTACTGTGTTGTAAAGTGTATTTATATAATCTGTTTGTAATATGTAATCTATAGATGGAAAAATCTTTCATTTATATTCTCAACAGTTACGTGAACAGGTAAAAGAAATATAGAAAGAAAGAAAAAAAATCAGCTTTTAGCTCTTTTATGTGAGAAAATATTACCTTTTCTTTTCATTAGTTTTACCTTTTTTCAGTGTTTTTCAAACAGAAAACTGGTTGGGTTTTGAAGTTTTTTAACCGACATGCACTCAATCATTGAGTTCTTCTGAAGTCTTAACACGTTTTTCTTGTACTAACTCTACAGAGAAAAGAAATTAGCTAACTTTAATGTGTTTATTTCTCTCGTTTATTTTAGATCTTTAGTCGGCCATGAATTGTAAGTAATTTTATTTTCAAACGATTTTTAATCAGTAGACAAGAAGCACGTTTAGAGTGTACAAAGTTTAGTCATATCCAATCATGTTTGAACTCAGTAGGATTGATTGATGAAACTTGAGAACACAGAAAATCACTGACAAGTGAAAGGTGAATGTTGAAATCACTGCTGCAACACGAACCTCGATCCCACTGGCAATTAAATAACAAAGAATGCGACGTAACACGCATTTTCCATTCCTTTATACAATTGTGGGGACTTTTACATGGGAAGTTGAGTGGTAAATTTGGAATACGATTCATCTCAGTCTGTTCTTTGACTGAGAACAATTTAATGTAGCTAGTCCTAAGCTTGCAGCGTTAATCTCGTAGCTATATGTCTAGTGTGATTGCTATAGACCAGAAATTGAAAATAAAAATAAAAATAAACTGTCGTTTTGTCAAGAAATAAAAGCAAGATGCCAAGCAATGAACCTATCCACCTTTCGATGTTTCCTGTGGCAAAGACTACGGAAGGTGAATGGAAGGTGTCGTAAGGAATTTAGAGCATGAGCATGCTCTTTCTTTTGGAAAAGTATTAAAGTGTATAGTAATTCACTTTGACCTGAATTCAACTCCCAAAATGGGATACAGACATACAGTGTATAGTGATAGTATATTATACACTATGCATCTTGCGTATAACAATTTGCTTTGTAATTCTGGTTTTTCCCTTGACCCTTTTAAAATCCTTCTGCATATATATGCTCACATAGTGTTTATAGTTTTAGTG


Gene Sequence:
>Vu_02741(-)
GGTGAGAATAGCCATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGCGAAGATGACAATGAACTTAGAAGAGGGCCCTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTGATCACGGGGAAGGCCGATGGAACTTGCTGGCTAAACGTTCAGGTAACTTGATAACAGCATAATTAGAAGTTAAATGCATGAAAGAAACACCACCCTGCTATTTTTTATCAATTTCCTTTCCTTTATATGACACAGGATTAAAGAGAACTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTGAAACGAGGAAATTTAACCCCACAAGAGCAACTTTTAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTATCTATCTATCTTCTGCGTCTGATTCTTTGGCTTATGATTGCGGTTATGGTCATTATTTTATTGTGAAAAACTGTTCACAAATTTGTCAATGCAATCTCCCCTGCATTTGTGTTATGGTACAAAAAATCTAGTTGCGAAATTACAATCATAAATTTTTTTTAGAACTCGCCTCTAACAGTAGAAGCAAAGGAAATATTGCCACTATCAGATGCTTGTCTGCTACATTTATCTGGATTTCTATTTCTTTAATGACTGTAGGTGGTCAAAAATTGCACAGCATTTGCCCGGAAGAACAGACAACGAGATCAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCCAGACATTTGAAAATTGAGACTGACAGCAGAGAATTTCAAGAGCTTGTAAGGCGTTTTTGGATGCCAAGATTGCTTCAGAAGGTAAAAGAGTCATCGTCTTCTTCGGCCATGTCGATTCAGAATCAGGCAATTCCTTTGGTTCTTGATGATGGTGTTTCTCAACAGTCAACTATTGGGACCATACCATGGCAGGGAGCTTGCGTGAGTATGAATGGAGGTAGTCCCACTTATATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAGTGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATGCCAAAAGTGGCTCATCATTTTGGACACACCATGGACCAATTCCATTCCCTAAGCAACAATGACTTTGGCACTTACTCATTTGATCCTTATCATGTAAATGACAATGCATATGAGATGGAGACCTTCAAAGCAGCAACTGCAAAGGTGGCTCAGGATGTGCAATACCCAATTGCTGACTGTCAACCGGCAGGAACCGATTGGCTAAGCAACGATTTTGCATGTACCATTTGGAACATCGATGAACTGTGGCAGTTTAGCAAGTTACAAAAATAAGATTTTTAGGGTTTCTCATTTTTGGAATAACCCAAACACTGTCTTTGATGATGTTATTGTGGATTAGCTACCAAATTAATCAATTCAGAGACGGTGATTGTTTTCTGTACATCTGTCATGTCATGAATTCCTCTGTTTAGATGATAGTGCTTTCTAATTTGTATTCA