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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02730 LG1 40253708 40256252 PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 40253768 missense_variant p.His458Pro
T/C 40253933 intron_variant
G/A 40253960 intron_variant
A/G 40253978 intron_variant
G/A 40255075 intron_variant
G/T 40255141 intron_variant
T/A 40255654 missense_variant p.Lys200Ile
C/T 40255725 synonymous_variant p.Val176Val
G/A 40255899 synonymous_variant p.Leu118Leu
A/T 40256208 missense_variant p.Phe15Leu
C/A 40256222 missense_variant p.Val11Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02730.1
MFIKIAFVCFVSTLFLFFTNTSAIHNTSFSPTCLTQRCTSGPNISYPFWLSLTDQLCGYHELGLLCSGGVTVFSHIGLYYTVQNIDYENHSLKLLDPDTFNETCPKARHAVPLGNLPLTHSPLNLNLSFYYNCTNYPSGVPSIQCLRSGTNQSFVFVSGNETTGFDWSGNCEEKIVVTVMKDAITSDGDLISQFSSAMDKGFVLEWHTASYCVQCEASGGVCGYSNPEKKVLCFCKDGSTKDTSCYGGSSSGLSRLIIGFIIAGGIGALLTCVVIYIFGRKLSPILSDIRQARKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNYFESKLGQGGYGQVYKGNLCNKAPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMQNGSLEKYIPNKNLETDPPLSWQRLHHIAEGIAKGLEPAMSRVVEMLEGSTDQLQIPPEPFIFSPMKTEVDICTTSSSD*


CDS Sequence:
>Vu_02730.1
ATGTTCATCAAAATTGCATTTGTTTGCTTTGTTTCTACCTTGTTTCTCTTCTTCACCAATACCTCTGCCATCCACAACACATCATTCTCACCAACTTGCCTTACTCAACGCTGCACATCTGGTCCTAACATCAGCTACCCCTTTTGGCTTTCCCTTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGAGGCGTCACAGTTTTTTCTCACATAGGATTATACTATACGGTACAAAATATAGACTATGAGAACCATAGCCTTAAGCTGCTGGATCCTGACACTTTCAACGAAACCTGTCCAAAGGCACGTCACGCTGTTCCCTTAGGCAACCTACCGCTCACTCACTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCACTAACTACCCTTCTGGTGTGCCTTCAATCCAGTGTCTCCGTTCTGGGACAAACCAGTCTTTTGTGTTTGTGTCGGGGAACGAGACCACAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTCACAGTGATGAAGGATGCGATTACAAGTGACGGTGACTTGATAAGCCAGTTTTCGAGTGCCATGGATAAAGGGTTTGTTCTTGAATGGCACACTGCTTCGTATTGCGTTCAGTGCGAGGCTAGTGGTGGAGTCTGCGGCTACAGTAACCCCGAGAAGAAGGTGCTGTGTTTCTGCAAGGATGGAAGTACAAAAGACACTTCGTGTTACGGGGGAAGCAGTTCTGGTTTGTCAAGATTAATTATAGGTTTTATTATAGCTGGAGGAATTGGTGCACTGCTGACATGCGTCGTAATTTACATTTTTGGAAGAAAATTGTCACCAATTTTGTCAGACATTCGGCAGGCGAGAAAGATTGATCGAGACATTGAGGCCTTCATCAGAAATAATGGACCACTTCCCATAAAAAGGTACTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTCAGGTATATAAGGGAAATCTATGCAACAAAGCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGCAGAACATCCCATGTAAACATCGTTAATCTCCTTGGTTTTTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCAAAATGGATCACTTGAAAAGTATATTCCCAACAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCCGAAGGAATAGCCAAAGGATTGGAGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCCGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA


Promoter Sequence:
>Vu_02730::LG1:40256252-40258252(-)
AGTCAAATCTACTTTGTAATAAAATAAATATTTAAAATGAATTTATTAAATAAAACATATTTAAAGGAATCCATTCATTTAAATAATTAATATATGGTGGATCACGACAAGTTACAAAATGTTTGATTAAAAAAAAGTGAATTGAGTTTAACTAAATTATTTTTAGTTCAACTAATAAAGAGTCCATCCATATAACATTAACTACATTAAGTAAGCTTAGTTTCACACTCTAGTTGAAGTAAAGATTGTACTATCTCACTCGGGAAACTTCAATATTTTACCATTTTTGTATAATTTACTTCTCCAGTTAAATAAATTTTGTGAGTATTTAAAAAAAAATTGGACTTTTCTTAATCTATAAATGTCATTGTACAGAAAAATAAAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCGTTTCTGGTTTTCGTCCCTCTTTCAAAGTAAGGTACAATTTGATCCTCATTCTTTTCGAAACGTTCGTTTTAGTCCTCAGAATTTTGGTTTTAGTCCTCATTTGTTGCTAAATGAGGACCAAATTTTTAAACAGTGTTTAGTTTTCGAGGACTAAAACGAACGTTTCGAAAAGAATGAGGACCAAATTGTACCTTACTTTGAAACAGGGACGAAAACCAGAAACGACCAATAGTTTAGGGAGTAAAAACATATTTAACCCAAAAATAAACGAGGAAAGGGGGAATACAAAGAAAGATATGGAAATCGTTTTTTATTTTGGATCTAATTTTGGACCCAGTCTTTGTTTATTATGTTTTGTGAGCCATTTATTTTTTTCTTGCTCACCCAATAAAGGGTTCAACTTGCTGTGTCCTATAAAAATGTTTAACTTTTATATTTTAGAATATATTTCCAAAATTAAAAGAATGGGTATAGAATATAAAAGAACTAGTGAATTTATCCAATTGAATCAAGTTTTCTTTCATTTTAAATGAATGGACTATCTTATTCGTTTTAAACACGTTTAGATTTAGTGAACAAGCAAAACAAAAAATTAATAATAATATTACAAATAAAAAACAATTCCTACATATTTGGAGCTCAATAATGCAAGTATAATCTCAACGAAAAACATAAGAACTTATAATTGTTCATATTTTCTTCCTTCTCACCTACTCATGTAGGACCCTAAACAACATCTACTTATTTTCTCTCCATTGATGTAATTTGTCAACAAAGCCTAATATACGTATTTAAAACTCTAACAAACATTTCAACTTTTGGAAACGACCTATAGTTCTCACTCAAAAAAATCTAAGACTTTTTGGGTTGTATTGAAACATCTTTTATTTCTGTAAATAAAACTACAATATCTCCTAAAGAAGAAAGAAATTGTTACAAGTGAATATGATATTCTCGTCAACACGTTCATAAAAATGTTATTTGAAATTTTGTTTTTCAGATATATTTATATTAACTAAAAATAAAACATATTTATAAATATATAAATATGTATAAATATATAAATGGATGAAAATTACATTTTATATATTATAAAATTGAATTAGATTTAAAACTTATTTAACATTATATTAACCGATTTGTTGTTTGATAAAATTATCATATCATTATTATTAGATTATTTATTAATATTTAATATTATATGTATAGGTATCGATGAAATGAAGATTGTGTGTGATTTTTTTATGTTAAATTAATTTTTATATGAATTAAAAGAAATAGAGAAATGATATGAAAATTAAGTTGCACGTTACGAAACATTTTCATTTCATTGAATGTATGAATGTGAAAAGTAGAAGGTGAGAAACGGGAAACAGATTCTCCTTCGCTACTATGATCTGTTTCTCTTATTGACCAGAACTGAGTTATGATGTGTTTGGGTAACGAAAATTCAACTTTGCTATCTCCCCAGAAATTTCCTTCATGCTCTGGACATTGGAAGTCTGATTAATCTTCACGTATATGTTGAAACAGACCCTCTTCTTCCCAATACTGAATAGGTTATGCTGTATTGGTCCTG


Gene Sequence:
>Vu_02730(-)
ATGTTCATCAAAATTGCATTTGTTTGCTTTGTTTCTACCTTGTTTCTCTTCTTCACCAATACCTCTGCCATCCACAACACATCATTCTCACCAACTTGCCTTACTCAACGCTGCACATCTGGTCCTAACATCAGCTACCCCTTTTGGCTTTCCCTTACTGACCAACTCTGCGGTTACCATGAACTTGGCCTTCTCTGTAGTGGAGGCGTCACAGTTTTTTCTCACATAGGATTATACTATACGGTACAAAATATAGACTATGAGAACCATAGCCTTAAGCTGCTGGATCCTGACACTTTCAACGAAACCTGTCCAAAGGCACGTCACGCTGTTCCCTTAGGCAACCTACCGCTCACTCACTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCACTAACTACCCTTCTGGTGTGCCTTCAATCCAGTGTCTCCGTTCTGGGACAAACCAGTCTTTTGTGTTTGTGTCGGGGAACGAGACCACAGGTTTTGACTGGTCCGGGAACTGTGAGGAAAAGATTGTGGTCACAGTGATGAAGGATGCGATTACAAGTGACGGTGACTTGATAAGCCAGTTTTCGAGTGCCATGGATAAAGGGTTTGTTCTTGAATGGCACACTGCTTCGTATTGCGTTCAGTGCGAGGCTAGTGGTGGAGTCTGCGGCTACAGTAACCCCGAGAAGAAGGTGCTGTGTTTCTGCAAGGATGGAAGTACAAAAGACACTTCGTGTTACGGTATGCTTGTTGCCAAATGGTGGAATCATCTAAATAAGAATACTTGGCACTATCATGGTTCCGACCATTTCCACATATTAAGCAATTGAGTTTTACTAATATGGTTGCGTATGAGTTGTATTATTTAATTGAGCATGTTCTGTTTTGATAGCAGGGGGAAGCAGTTCTGGTTTGTCAAGATTAATTATAGGTATAATTTATGTCTTTAATTATATTTCTTGTCATTTTCTTGTTTCGCAGAAAAGTGTACTCACTTTATAAACTGTTTTTACAACCTCTTTGATAGAATTTTCGATAGCAGAAACATTAAAAAGTAACACCAGAATCACAAATTTGCTCATGCTAACTTTCTCCTACGCTTAGCAACATAATCTTATCAAACAAGTAACTCCCAAAGCCTTGGATTTTCCGAATGATGTTAATATAAAAAACAAAGTACCAAACCAAGACAACCTGCGTTGTGAAAAGATGACTAATCTGTTGTTACTAGTTCTGGTTTATATTGAAAAGGAAATGATTTATGTGGTTTGTCATCATTTTGTCACCGAATTTAGAAGTTAAACTAAACCATGATATTCTCGATAATTAACGTTTCTCACATGATAGTGTTCCATTGTGAATGTATCGAAATTTCGGAACCTTCATTTCAAGGACTAGAAGAGCTGAATTACTTTTCTATTTTTGCTTGCAGGTTTTATTATAGCTGGAGGAATTGGTGCACTGCTGACATGCGTCGTAATTTACATTTTTGGAAGAAAATTGTCACCAATTTTGTCAGACATTCGGCAGGCGAGAAAGATTGATCGAGACATTGAGGCCTTCATCAGAAATAATGGACCACTTCCCATAAAAAGGTACTCATATTCAGATATCAAGAAAATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTCAGGTATATAAGGGAAATCTATGCAACAAAGCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGCAGAACATCCCATGTAAACATCGTTAATCTCCTTGGTTTTTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCAAAATGGATCACTTGAAAAGTATATTCCCAACAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCCGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTCGGATATTGCATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCTAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGAGGGGTTTCGTATAAATCTGATGTTTATAGTTACGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTAGCATGGCATGAAGGTATGACCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCCGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA

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