Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02677 LG1 39785056 39786528 "PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A,* 39785071 missense_variant p.Glu6Lys
C/A,* 39785083 missense_variant p.Arg10Ser
T/*,A 39785097 missense_variant p.Asn14Lys
A/G,* 39785119 missense_variant p.Lys22Glu
T/G,* 39785122 missense_variant p.Tyr23Asp
A/C 39785125 missense_variant p.Thr24Pro
A/G 39785128 missense_variant p.Met25Val
G/A 39785156 missense_variant p.Gly34Asp
G/C 39785158 missense_variant p.Glu35Gln
G/C 39785160 missense_variant p.Glu35Asp
G/C 39785212 missense_variant p.Glu53Gln
T/C 39785224 missense_variant p.Trp57Arg
T/C 39785278 synonymous_variant p.Leu75Leu
A/T 39785299 missense_variant p.Asn82Tyr
C/A 39785301 missense_variant p.Asn82Lys
G/C 39785305 missense_variant p.Glu84Gln
A/C 39785317 missense_variant p.Thr88Pro
C/T 39785318 missense_variant p.Thr88Ile
T/A 39785325 synonymous_variant p.Pro90Pro
C/T 39785337 synonymous_variant p.Phe94Phe
G/A 39785351 missense_variant p.Arg99Lys
G/C 39785366 missense_variant p.Cys104Ser
G/C 39785372 missense_variant p.Cys106Ser
C/G 39785379 missense_variant p.Asn108Lys
A/G 39785385 synonymous_variant p.Arg110Arg
C/T 39785402 missense_variant p.Thr116Met
A/T 39785418 synonymous_variant p.Thr121Thr
G/A 39785445 synonymous_variant p.Thr130Thr
T/C 39785565 synonymous_variant p.Cys170Cys
G/C 39785580 synonymous_variant p.Ser175Ser
C/T 39785604 synonymous_variant p.Ile183Ile
G/A 39785607 synonymous_variant p.Pro184Pro
A/T 39785610 synonymous_variant p.Thr185Thr
G/A 39785618 missense_variant p.Gly188Asp
A/T,G 39785620 missense_variant p.Ser189Gly
C/T 39785623 synonymous_variant p.Leu190Leu
G/T 39785628 synonymous_variant p.Ser191Ser
C/A,T 39785641 missense_variant p.Leu196Met
C/A 39785664 synonymous_variant p.Ile203Ile
A/G 39785679 synonymous_variant p.Glu208Glu
T/G 39785685 missense_variant p.Ile210Met
T/A 39785688 synonymous_variant p.Ala211Ala
A/G 39785709 synonymous_variant p.Ser218Ser
A/G 39785718 synonymous_variant p.Leu221Leu
G/T 39785722 missense_variant p.Asp223Tyr
A/G 39785723 missense_variant p.Asp223Gly
T/A 39785731 missense_variant p.Tyr226Asn
T/G 39785733 stop_gained p.Tyr226*
G/A 39785760 synonymous_variant p.Pro235Pro
T/G 39785762 missense_variant p.Phe236Cys
G/C 39785775 synonymous_variant p.Leu240Leu
C/T 39785813 missense_variant p.Ser253Leu
A/T 39785829 synonymous_variant p.Ser258Ser
G/T 39785830 missense_variant p.Asp259Tyr
A/G 39785831 missense_variant p.Asp259Gly
A/G 39785886 synonymous_variant p.Ser277Ser
C/T 39785891 missense_variant p.Ala279Val
T/C 39785994 synonymous_variant p.Pro313Pro
C/A,T 39786000 synonymous_variant p.Arg315Arg
C/T 39786012 synonymous_variant p.Ser319Ser
A/T 39786015 synonymous_variant p.Ser320Ser
A/G 39786018 synonymous_variant p.Val321Val
G/C 39786038 missense_variant p.Ser328Thr
T/A 39786041 missense_variant p.Phe329Tyr
C/T 39786048 synonymous_variant p.Ser331Ser
G/A 39786077 missense_variant p.Cys341Tyr
A/G 39786125 missense_variant p.Tyr357Cys
C/T 39786139 missense_variant p.Arg362Cys
T/C 39786149 missense_variant p.Phe365Ser
C/A 39786184 missense_variant p.His377Asn
G/A 39786187 missense_variant p.Asp378Asn
G/C 39786211 missense_variant p.Glu386Gln
T/G 39786244 missense_variant p.Tyr397Asp
A/G 39786269 missense_variant p.Asn405Ser
T/C 39786281 missense_variant p.Leu409Pro
T/C 39786290 missense_variant p.Ile412Thr
C/T 39786300 synonymous_variant p.Ser415Ser
C/T 39786315 synonymous_variant p.Arg420Arg
T/C 39786377 missense_variant p.Phe441Ser
G/A 39786427 missense_variant p.Gly458Ser
G/C 39786464 missense_variant p.Gly470Ala
C/A 39786473 stop_gained p.Ser473*
C/A 39786482 missense_variant p.Thr476Lys
A/G 39786485 missense_variant p.Lys477Arg
G/A 39786494 missense_variant p.Arg480Lys
G/A 39786496 missense_variant p.Glu481Lys
G/A 39786504 synonymous_variant p.Lys483Lys
A/C 39786507 synonymous_variant p.Ala484Ala
G/A,T 39786524 missense_variant p.Gly490Asp
A/G 39786528 splice_region_variant&stop_retained_variant p.Ter491Ter

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02677.1
MKFLKELCLRGCSNLQNFPEIKYTMENLAVLILGETAIQALPSSLWRLVGLQELSLWGCRNLEIIPSCIGRLTRLCKLDLTNCESLQTFPSTIFKLKLRKLDLCGCFNLRTFPEITEPAQTFAHINLTETAIKDLPSSFGNLVNLRSLQLNKCMDLESLPNSIVNLKLLCKLDCSGCAKLTEIPTHIGSLSSLMELSLSESGIVNLPESIAHLSSLKSLDLSDCKYLECIPQIPPFLKQLVALDCPSIKQVMSNRNLSDSKEGVFKFHFTNAQQLDSGARANIEEDARLRMTHDAYRYVFFCFPGTAVPHWFPFRSEGSSVTINEDLSFCSDDRLIGFALCVVFGLLDTNGINGGRYSFSYRLKFESDDDGTQIITHDDLLQNYFEWNGKYRVVNQYHTFMWKFNLKYLRTIGMSLRHARSFTFEISPLDYRSYDFEIIDFRSMVRKLKSVVTMKECGLCPLYRSGSNVGESSRKTKEDRERKAESYLVG*


CDS Sequence:
>Vu_02677.1
ATGAAATTCCTAAAGGAACTTTGTCTCCGTGGTTGCTCAAATTTGCAAAATTTCCCCGAGATTAAGTACACGATGGAAAATTTGGCGGTTCTAATCTTAGGCGAGACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAACTGAGTTTGTGGGGTTGCAGGAATCTTGAGATTATTCCATCTTGCATTGGAAGGCTCACCAGATTATGCAAGTTAGACCTTACCAACTGTGAATCACTTCAAACTTTTCCTAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTTAACTTGAGAACCTTCCCAGAGATCACGGAACCGGCACAAACATTTGCTCACATAAATTTAACAGAAACGGCTATCAAAGATCTGCCTTCCTCATTTGGCAATTTGGTTAATCTTCGATCCCTGCAGCTTAACAAATGCATGGATCTCGAATCACTCCCAAACTCCATTGTTAATCTTAAGCTTCTCTGTAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCGACACACATTGGTAGCCTGTCGTCATTAATGGAACTGTCACTGAGTGAGAGCGGAATCGTGAACCTTCCTGAAAGCATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGACTGCAAATATCTTGAATGCATCCCACAGATTCCACCGTTTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAAACAAGTGATGTCAAATCGAAACCTCTCAGATTCAAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCCATGATGCATATAGGTATGTGTTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCTTTTCGCAGCGAAGGAAGCTCAGTAACTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGGATTGTTAGATACCAATGGTATTAATGGTGGACGTTATTCTTTTAGTTACCGCCTAAAATTTGAATCTGATGACGATGGCACACAGATTATTACACATGATGATCTGTTACAGAACTATTTCGAATGGAATGGCAAATATAGAGTTGTAAATCAATATCACACATTCATGTGGAAATTTAACTTGAAGTACCTAAGGACTATCGGGATGAGCCTTAGGCATGCTCGCAGCTTCACTTTTGAGATTAGTCCATTGGATTATCGCAGCTACGATTTTGAGATTATTGATTTCAGATCAATGGTGAGAAAGTTAAAATCAGTTGTGACAATGAAAGAATGCGGCCTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAAGGAAAACAAAGGAAGATAGGGAGAGGAAGGCAGAAAGCTACTTAGTGGGCTAA


Promoter Sequence:
>Vu_02677::LG1:39783056-39785056(+)
TCATAGTCAAACCGTCTTCAACATCTTTTTTTCTATAATAAGTTTTGTATTTAATATTTCGATCACAATATAACCTTAGATATCCCTCACACATGCTCATGAAAGGGTCAAAACATACCCATAAAAGGCCAAAACACACCCATAAAAGGACAAAATGCACATAAGGTCATACTCATAATGGTCATCAATGGAATCACATAATATATAACATCATGTATATCATATACTTATGTATACATATTCATGCATCTTATAGTCATCATCATCAATCTCATGGCATGACCTCGTTTCCTAATCGAAAAGGAAGATTCTTTTACTTCAATGATCACATAACTTGACTGACATCTTGATCGATAAACCTTTTGTGACTTGAATAAATATATTTAAAGGAGAGAGACTCTAACATCTTCCTCTCGTGAACGGTTAGCGATGCTACTTGTTGTAATATCTAATAAGTTCTTGAAACATAAAGCACATTGTTTCATTGGTTAGAAATTTAAGATAAGTTGAAAATCCTATATTGTGTAGAAATGATAAGATTGAGAACATATAAGAACTTAAAAACCTATTACTTTAAAATTTTGGATTAAAACATATGTTTTAATATCTAATATGAGTTTATTTATTATTCATTTATGCCAATTATCCTTGAAGTTTAAGTGGTATTATAATTTTAGATATTTTAGTGATGTTTTTATTAATTTTATTTATTAATATATTGACAAATAAGCAAAATATAACATTCATATCATATAATTAATTGAAAAATTAAACAAGTGAAATATATAAATTTAATATCTTAATTAGAAAATATAAAAAAAATTGAATACTCACTTAACTAAATAAATTTAAATTTATTAAAGACTTGAACTTAATTAATCTATTTTTTTTTATTATCATATAACTTCAATATAACCTGTAATAAATTATGTATTCAATAAATCACGGAAAGATGGATTTATACATTGTCTGCATCATTCAACATTAACATATAACCTACCTAAGGTTCAATTGTAACTCACTTTGTCAGTTTATTCTTATAAGAGTAATGTCGTTTATTTAAATTTTTACAATATATTTTTATTAGAACGAAGAAGAGAGACGAGAAAAGATAAATAAAGGTAAGTAGTTGTCATCTATTATAAACTATTTTCATCAGGTTGAAATTATTAGGATGTAATATTAGATAGGAAACAAAACTATCAAATTTTGTTTAATTTTTATAATAACTATCAAATTTATAGCCACTATAATTTTGTTTGTTCAACGTAAACTAAACAGATAACGTAAGTAGGAGTTTATTGAAGAAAAATAAATAAGCTTCGTTTTAGTTTTTCTTTATTACCTGATAATTTCCTTTTTCTGGCAGAGTTTACCGAAGTTGAAAAGGCTCAACCTGGGTTATTCTAAGAAACTTACAAGAATACCAGACCTTTCCCTGTCACCAAATATTGAAGAAATAATTCTCAATAATTGTCCAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCACTTGTTTACGTTTAGATAGATGTCGTAATCTCAATAGGGTAACTGTTCCTAGCAATATTCTATCCAGATCACCAGGATCCATTAATCTTTCCAGGTGTTCGTATCTTGAAATTTTTTCAACCAGTCAAACCCAAATATCTTATTCTCCACCATCGTCATCATTAATCGCTCCAATATTCCCTCGCGTCAAACTGGCGCGTCAATTGCAAACTGGACTTTCCTTAGAGGAGTTCTTGCCTGGACCTGAAAATATCATAAGATCCTATTTCAGAAGAATTTTCTCCATTACTTTTGACCGATATTGGAAAGCAGATGAAGAAAAACAAGTGACTAATAATAATATATACGCATATGATGAAATGCCGATACAACTCACTGGATATGAGCCCTTAAACTTTCGAATTTTGAAGAAGCTCTGTTTCATAGATCTCAGAAACTGTTCTGACCTTACAATATTTCTATCTGACCTTTCTGAGA


Gene Sequence:
>Vu_02677(+)
ATGAAATTCCTAAAGGAACTTTGTCTCCGTGGTTGCTCAAATTTGCAAAATTTCCCCGAGATTAAGTACACGATGGAAAATTTGGCGGTTCTAATCTTAGGCGAGACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAACTGAGTTTGTGGGGTTGCAGGAATCTTGAGATTATTCCATCTTGCATTGGAAGGCTCACCAGATTATGCAAGTTAGACCTTACCAACTGTGAATCACTTCAAACTTTTCCTAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTTAACTTGAGAACCTTCCCAGAGATCACGGAACCGGCACAAACATTTGCTCACATAAATTTAACAGAAACGGCTATCAAAGATCTGCCTTCCTCATTTGGCAATTTGGTTAATCTTCGATCCCTGCAGCTTAACAAATGCATGGATCTCGAATCACTCCCAAACTCCATTGTTAATCTTAAGCTTCTCTGTAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCGACACACATTGGTAGCCTGTCGTCATTAATGGAACTGTCACTGAGTGAGAGCGGAATCGTGAACCTTCCTGAAAGCATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGACTGCAAATATCTTGAATGCATCCCACAGATTCCACCGTTTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAAACAAGTGATGTCAAATCGAAACCTCTCAGATTCAAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCCATGATGCATATAGGTATGTGTTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCTTTTCGCAGCGAAGGAAGCTCAGTAACTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGGATTGTTAGATACCAATGGTATTAATGGTGGACGTTATTCTTTTAGTTACCGCCTAAAATTTGAATCTGATGACGATGGCACACAGATTATTACACATGATGATCTGTTACAGAACTATTTCGAATGGAATGGCAAATATAGAGTTGTAAATCAATATCACACATTCATGTGGAAATTTAACTTGAAGTACCTAAGGACTATCGGGATGAGCCTTAGGCATGCTCGCAGCTTCACTTTTGAGATTAGTCCATTGGATTATCGCAGCTACGATTTTGAGATTATTGATTTCAGATCAATGGTGAGAAAGTTAAAATCAGTTGTGACAATGAAAGAATGCGGCCTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAAGGAAAACAAAGGAAGATAGGGAGAGGAAGGCAGAAAGCTACTTAGTGGGCTAA