Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02676	LG1	39777527	39779221	"TMV resistance protein N-like, partial "	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	39777531	missense_variant	p.Pro2His
A/G	39777621	missense_variant	p.Tyr32Cys
A/G	39777633	missense_variant	p.Asp36Gly
T/A	39777690	missense_variant	p.Ile55Lys
G/A	39777714	missense_variant	p.Arg63His
A/G	39777786	missense_variant	p.Asp87Gly
G/A	39777858	missense_variant	p.Gly111Asp
T/A	39777880	synonymous_variant	p.Pro118Pro
T/C	39777896	synonymous_variant	p.Leu124Leu
A/T	39777920	missense_variant	p.Met132Leu
C/A	39777923	synonymous_variant	p.Arg133Arg
G/A	39777926	missense_variant	p.Gly134Ser
T/A	39777937	missense_variant	p.Asn137Lys
A/G	39777971	missense_variant	p.Ile149Val
A/C	39777992	missense_variant	p.Ile156Leu
G/A	39778026	missense_variant	p.Ser167Asn
A/G	39778069	synonymous_variant	p.Gly181Gly
T/C	39778073	synonymous_variant	p.Leu183Leu
C/T	39778101	missense_variant	p.Thr192Met
T/G	39778121	missense_variant	p.Ser199Ala
T/C,A	39778129	synonymous_variant	p.Ile201Ile
A/C	39778137	missense_variant	p.Lys204Thr
A/T	39778156	missense_variant	p.Glu210Asp
T/A	39778158	missense_variant	p.Leu211Gln
A/G	39778168	synonymous_variant	p.Ser214Ser
T/G	39778186	missense_variant	p.Asn220Lys
T/C	39778204	synonymous_variant	p.Leu226Leu
A/T	39778210	missense_variant	p.Lys228Asn
G/C	39778212	missense_variant	p.Cys229Ser
A/T	39778214	missense_variant	p.Thr230Ser
A/G	39778225	synonymous_variant	p.Glu233Glu
C/T	39778231	synonymous_variant	p.Leu235Leu
C/T	39778240	synonymous_variant	p.Ser238Ser
G/A	39778257	missense_variant	p.Arg244His
G/C	39778279	synonymous_variant	p.Ser251Ser
T/G	39778282	synonymous_variant	p.Gly252Gly
A/T	39778309	synonymous_variant	p.Thr261Thr
C/T	39778319	missense_variant	p.Arg265Cys
G/A	39778330	synonymous_variant	p.Ser268Ser
G/A	39778350	missense_variant	p.Arg275Lys
A/G	39778364	missense_variant	p.Met280Val
A/G	39778417	synonymous_variant	p.Leu297Leu
C/T	39778420	synonymous_variant	p.Ser298Ser
G/T	39778421	missense_variant	p.Asp299Tyr
T/C	39778423	synonymous_variant	p.Asp299Asp
C/A	39778449	missense_variant	p.Pro308His
T/G	39778450	synonymous_variant	p.Pro308Pro
G/A	39778459	synonymous_variant	p.Pro311Pro
T/G	39778461	missense_variant	p.Phe312Cys
A/G	39778477	synonymous_variant	p.Val317Val
C/A	39778490	missense_variant	p.Pro322Thr
G/A	39778500	missense_variant	p.Arg325Lys
C/T	39778512	missense_variant	p.Pro329Leu
A/G	39778585	synonymous_variant	p.Gln353Gln
G/A	39778616	missense_variant	p.Glu364Lys
A/G	39778633	synonymous_variant	p.Arg369Arg
G/C,*	39778640	missense_variant	p.Asp372His
G/T	39778643	missense_variant	p.Asp373Tyr
G/A	39778646	missense_variant	p.Ala374Thr
G/A	39778660	synonymous_variant	p.Val378Val
C/G	39778680	missense_variant	p.Thr385Ser
G/A	39778682	missense_variant	p.Ala386Thr
C/T	39778699	synonymous_variant	p.Phe391Phe
T/C	39778702	synonymous_variant	p.Pro392Pro
T/C	39778708	synonymous_variant	p.Arg394Arg
G/A	39778709	missense_variant	p.Gly395Ser
T/C	39778711	synonymous_variant	p.Gly395Gly
A/G	39778712	missense_variant	p.Asn396Asp
T/G,A	39778714	missense_variant	p.Asn396Lys
C/G	39778719	missense_variant	p.Pro398Arg
T/C	39778720	synonymous_variant	p.Pro398Pro
A/T	39778723	synonymous_variant	p.Ser399Ser
G/C	39778728	missense_variant	p.Ser401Thr
T/C	39778735	synonymous_variant	p.Asn403Asn
T/C	39778747	synonymous_variant	p.Ser407Ser
G/T	39778752	missense_variant	p.Cys409Phe
G/T	39778755	missense_variant	p.Ser410Ile
C/T	39778756	synonymous_variant	p.Ser410Ser
G/A	39778763	missense_variant	p.Gly413Arg
C/A	39778799	missense_variant	p.Leu425Met
C/T	39778807	synonymous_variant	p.Asp427Asp
T/C	39778809	missense_variant	p.Met428Thr
T/G	39778834	synonymous_variant	p.Gly436Gly
T/C	39778840	synonymous_variant	p.Phe438Phe
T/G	39778858	missense_variant	p.Phe444Leu
T/A	39778862	missense_variant	p.Ser446Thr
C/T	39778889	missense_variant	p.Pro455Ser
A/G	39778893	missense_variant	p.Asn456Ser
T/A,C	39778902	missense_variant	p.Val459Glu
A/T	39778908	missense_variant	p.Asn461Ile
C/A	39778909	missense_variant	p.Asn461Lys
A/T	39778921	missense_variant	p.Lys465Asn
G/A	39778928	missense_variant	p.Gly468Ser
G/A,*	39778931	missense_variant	p.Glu469Lys
C/G	39778936	missense_variant	p.Asp470Glu
G/C	39778940	missense_variant	p.Val472Leu
G/C	39778943	missense_variant	p.Val473Leu
T/C	39778944	missense_variant	p.Val473Ala
C/T	39778945	synonymous_variant	p.Val473Val
A/G	39778946	missense_variant	p.Asn474Asp
G/A	39778952	missense_variant	p.Asp476Asn
C/A	39778964	missense_variant	p.Leu480Met
A/C	39778976	missense_variant	p.Asn484His
C/T	39778985	missense_variant	p.Pro487Ser
G/A,*	39778990	synonymous_variant	p.Leu488Leu
A/G	39778992	missense_variant	p.Lys489Arg
G/T	39778996	synonymous_variant	p.Thr490Thr
T/C	39778999	synonymous_variant	p.Ser491Ser
A/C,T	39779017	synonymous_variant	p.Leu497Leu
T/C	39779018	missense_variant	p.Cys498Arg
A/C	39779027	missense_variant	p.Ser501Arg
C/T	39779047	synonymous_variant	p.Ile507Ile
G/*,A	39779053	synonymous_variant	p.Pro509Pro
A/C	39779061	missense_variant	p.Tyr512Ser
G/A	39779063	missense_variant	p.Asp513Asn
A/G	39779064	missense_variant	p.Asp513Gly
C/G	39779076	missense_variant	p.Pro517Arg
G/A	39779078	missense_variant	p.Asp518Asn
T/C	39779080	synonymous_variant	p.Asp518Asp
G/A	39779090	missense_variant	p.Val522Ile
T/C	39779094	missense_variant	p.Val523Ala
A/G	39779097	missense_variant	p.Asn524Ser
T/A	39779098	missense_variant	p.Asn524Lys
T/A	39779102	missense_variant	p.Leu526Ile
A/G	39779104	synonymous_variant	p.Leu526Leu
A/G	39779107	synonymous_variant	p.Lys527Lys
A/G	39779120	missense_variant	p.Ile532Val
A/G	39779127	missense_variant	p.Glu534Gly
A/G	39779128	synonymous_variant	p.Glu534Glu
A/C	39779134	synonymous_variant	p.Gly536Gly
A/G	39779135	missense_variant	p.Met537Val
G/A	39779137	missense_variant	p.Met537Ile
T/C	39779146	synonymous_variant	p.Leu540Leu
T/C	39779161	synonymous_variant	p.Ser545Ser
G/A	39779206	synonymous_variant	p.Arg560Arg
C/T	39779218	synonymous_variant	p.Ser564Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02676.1

MPFIRLDPSEIFSITFDRYEEEEKEVTNNDIYLQCDEVLTKLREGVPLNFQSLKIFCFLDVSRCSSLTTFPCDLSETKFLKQLCLRDCSKLENFPEIEDTVEGLAVLILDGTAIQALPSSLWRLVGLEQLSMRGCKNLEIIPSSIGSLIRLCKLDITYCESLQTFPSTIFKLKLRILDLCGCLRLRTFPEITEQAQTFSHINLKETAIKELPSSFGNLVNLRSLQLNKCTDLESLPNSIVNLKRLCKLDCSGCAKLTEIPTHIGRLSSLMEMSLRKSGIMNLPESMAHLSSLKSLDLSDCKKLECIPPIPPFLKQLVALDCPSIRRVMPNSLVRNLSESKEGVFKFHFTNAQQLDSGARANIEEDARLRMTDDAYRSVFFCFPGTAVPHWFPFRGNGPSVSINEDLSFCSDDGLIGFALCVVFELLDMNDIEGRYGSFSYSLKFESDDDGTQIIPNNDVLNNYFKWNGEDRVVNQDHTFLWKFNLEPLKTSGMSLRLCDASSFTFEISPYDYDFQWPDYDSVVNELKSVVTIKECGMCPLYSTGSNVAQFSRETKQDKKRKAES*

CDS Sequence:
>Vu_02676.1

ATGCCTTTCATAAGACTAGATCCCAGTGAAATCTTCTCAATTACCTTTGATAGATACGAGGAGGAAGAAAAAGAAGTGACTAATAATGATATATACTTACAATGTGATGAAGTACTGACGAAACTAAGAGAAGGTGTACCCTTAAACTTTCAAAGTCTGAAGATATTCTGTTTCTTAGATGTGTCTCGCTGTTCTTCCCTTACAACCTTTCCATGTGACCTTTCTGAGACGAAATTCCTGAAGCAACTTTGTCTCCGTGATTGCTCAAAATTGGAAAATTTCCCCGAAATTGAGGACACGGTGGAAGGTCTAGCGGTTCTCATCTTAGACGGCACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTGAACAACTGAGTATGCGAGGTTGCAAGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCATCAGACTATGCAAGTTAGACATTACCTACTGTGAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGATACTTGATTTGTGTGGATGTTTAAGGTTGAGGACCTTCCCAGAGATCACGGAGCAGGCACAAACTTTTTCTCACATTAACTTAAAAGAAACGGCTATCAAAGAACTGCCTTCCTCATTTGGCAATTTGGTTAATCTTCGATCCCTGCAGCTTAACAAATGCACTGATCTCGAATCACTCCCAAACTCCATTGTTAATCTAAAGCGTCTCTGTAAACTTGATTGTTCGGGTTGTGCCAAATTAACAGAAATCCCAACACACATTGGTCGCTTGTCTTCGTTAATGGAAATGTCACTGAGAAAGAGTGGAATCATGAACCTTCCCGAGAGCATGGCTCATCTTTCAAGCTTGAAATCGCTTGATTTAAGCGATTGCAAAAAGCTTGAATGCATCCCACCTATTCCACCGTTTCTAAAACAACTCGTAGCATTGGATTGCCCATCCATTAGAAGAGTGATGCCAAATTCTCTTGTTCGAAACCTCTCAGAGTCGAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGAATGACCGACGATGCATATAGGTCTGTGTTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCTTTTCGTGGTAATGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACGGGCTCATTGGTTTCGCTTTGTGTGTTGTTTTTGAACTGTTAGACATGAATGATATTGAAGGTAGATACGGTTCTTTTAGTTACAGCCTAAAATTTGAATCTGATGATGATGGTACACAGATTATTCCAAATAATGATGTGCTAAACAACTATTTCAAATGGAATGGTGAAGACAGAGTTGTCAATCAAGATCACACATTCCTGTGGAAATTTAACTTGGAGCCCCTGAAGACGAGTGGCATGAGCCTTAGGCTATGTGATGCTAGCAGCTTCACTTTTGAGATCAGTCCGTATGATTATGACTTTCAGTGGCCAGATTACGACTCAGTTGTGAATGAGTTAAAATCAGTTGTCACAATAAAAGAATGCGGAATGTGTCCTCTTTATAGCACCGGAAGTAATGTTGCACAATTTTCGAGGGAAACAAAACAAGATAAGAAGAGGAAGGCCGAAAGCTAG

Promoter Sequence:
>Vu_02676::LG1:39775527-39777527(+)

GTTCTCCAAATTTTGGGTTCATTGTTATATGGCAGACAAAGAGAAGCATGGGAAAGTCAGTTGCAAAACTTGGAGAAGTGCCAGGATCATGATATTTTCAATGTATTAAAATTAAGTTATGATGGGCTCCGAGAGGAGGAGAAGAATATATTTCTTGACATCGCTTGCTTTTACAGAGGACACGAGGAGATTGTAGTAGCAGAAACACTAGACTGATTGTGATTTCTCTTCTAAGATTGGAATGGATGTTCTCAAAGATAAATGTCTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTCAACATCCTGGAAAACGCAGCCGATTGTTCAAGGCTGACGAAATTCATGAGATTTTAAGAAATAACAAGGTGTGTTTTATTGTTATTCAATTGAAAGAGTCACATGGATTTATGTTATGATAAATTGATAACCATTGAGATGTTATTAAATAGCTTGCAATGCAACATTTATGTTTAGCTTTTTTTTTTTTTTCTAATTGCTTTGATACTTTCAGGGATCAGATGCAATACAATGTATATTACAAGATATAGACGAAATGGAAGAAGTTAAAGTACATGCAAAAGCTTTCAAAAAGATGAACAATCTTAGGATGATTGTGTTCTATTCTTATTCTAGTTCTTGGCGTTCTAAATGTGTTTCTTGAATCATCTCTAGTAAGTCTGCCAGACACTTTGAAGATTCTTTGTTGGAATGGTTTCCCTCAAAGATCTTTGCCATCAAACCTTTGCCCACAAAATCTGGTGAGACTTGAAATGCCAAACTGCCATCTTGAACAACTTTGGGAAAGAGATCAGGTTTTGCAAGTTATCTATGTTCCTTTGCCTTTTAGACTTTTAAAGATAAAAATAAATTCTACATGCATATTTTATGTATTGTACATCTACATGTTTGCATTAGAAATTCCTTTGTGCCCTCTCCACTTATTCGTTTTGATATTTCTTTCATTAGAATCACACATTTATACTATATCATAAGCGTCATACTTAGCACCTTTCTAAATATAATTATAAATATAATAGTTATATTTGATGCATATCGTCTAATGGCCCATTATTGTATTGTCCAGTTAGATATCTCTCCATAGTGTCTATCCTGATTTACATGATATTTTGGTTTAGCAATTTTTTTTTATATATATTTTGGTTTAGCAATTTTGGTTTACTTTGTCAGTCTATTCTGTTAAGAGCAATGTCTTTGTCATTTAAATTTTTAGAATACATTTTTATGAAAAAGAAGAACAGAGATGAGACAAGATAAATATTTCCTCGTTGTCATCTATTATAAATTACTATAGTAAGTTTTATCAATACAAAATAAATTCAGGTTAAAATTATAAGGACGTAATTTTAGGTAAGGAGCAAAACATGTTAAATTTTGTGAATTTTTATAATAACTATAAAACTTATACCCAACATAATTTTGTTAGTTCACAGTGTGATCTTTTTAATAGTGGTATTTATGTAAAATATAGAGTCAATAGATAATGTAACTAAGAGTATACCGAAGAAAAATAGATAAAATTGCTTAAATCTTTATTTTAGTTTTTCTGTTACCTGATTCATTTACTTTCGTCGCAGAATTTACCAAAGTTGAAAAGGCTCAACCTGAGTTATTCTCCAAAACTTACTAGAATACCAGATCTTTCTCTTTTACCAAATATTAAAGAAATAATTCTGAGTCATTGTGAAAAGTTGATTCACGTTCACTCTTCCAGATTTCTCAGCAAGCTCAGTTGTTTATTGTTAAATGGTTGTTATGGTCTGAAGAGTGTAACAATTCCCAGCAATATTCTAACCAGATCACCTGGATTGATTCTACTTTCCGATTGTCACGAGCTTGAAATGTTTCAAACCTGTGAAACTCAATCATGGCCTTTTCCATTATTATCATCAATCTGGGAAAGACCCTACGATATATTGGGTAAATCTA

Gene Sequence:

>Vu_02676(+)