Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02675	LG1	39773396	39773890	"TMV resistance protein N-like, partial "	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	39773414	missense_variant	p.Pro7Ser
T/C	39773435	missense_variant	p.Ser14Pro
G/T	39773579	missense_variant	p.Ala62Ser
A/T	39773596	synonymous_variant	p.Ile67Ile
G/C	39773647	synonymous_variant	p.Ser84Ser
T/C	39773656	synonymous_variant	p.Cys87Cys
T/C	39773657	synonymous_variant	p.Leu88Leu
A/G	39773665	synonymous_variant	p.Glu90Glu
G/C	39773668	synonymous_variant	p.Leu91Leu
T/A	39773679	missense_variant	p.Leu95Gln
G/A	39773680	synonymous_variant	p.Leu95Leu
T/C	39773683	synonymous_variant	p.Asp96Asp
G/A	39773717	missense_variant	p.Val108Ile
T/G	39773731	synonymous_variant	p.Val112Val
G/A	39773732	missense_variant	p.Asp113Asn
G/C	39773755	missense_variant	p.Gln120His
A/G	39773759	missense_variant	p.Lys122Glu
G/A	39773842	synonymous_variant	p.Leu149Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02675.1

MAESSSPFAVSTSSTSYDVFLNFRGEDTRDNFISHLYAALQRKHIEGYIDYRLLRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILDCKKRYGRDVIPVFYKVDPSTVRKQEKRYKEAFEEHELRFKEDMEKVQGWKDALTEAAGLSGWDSNVTR*

CDS Sequence:
>Vu_02675.1

ATGGCAGAGAGTTCTTCACCATTCGCTGTGTCCACTTCTTCCACTAGCTACGATGTGTTTCTGAACTTCAGAGGGGAAGACACGCGTGACAACTTCATCAGTCACCTTTATGCAGCGCTGCAGAGGAAGCACATTGAAGGATATATTGATTACAGGCTACTCAGGGGAGAAGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATCTATGTCCTGGTTTTCTCCGAAAACTATGCATCTTCGACGTGGTGTTTGAATGAACTGACTAAGATACTGGATTGCAAGAAGAGATATGGAAGGGATGTGATACCCGTTTTCTACAAGGTTGATCCATCAACTGTCAGGAAGCAGGAAAAGAGATACAAAGAAGCATTCGAAGAGCATGAACTACGGTTTAAGGAAGACATGGAGAAAGTGCAAGGATGGAAGGATGCTCTGACCGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACGTCACCAGGTAA

Promoter Sequence:
>Vu_02675::LG1:39771396-39773396(+)

CATTTTTTATTTATTTTGTTTTATTTACATTTTCAATGGCATTTTACAGGTGGGTTCGATCAGACAAGATTTCTAAGTTATTGATGTGGACGTAAGTTTGGTTGCTCCGTTGTCCCAAAGTTACATTTTCTTGAAACTCTTCATTCGTTAACTTCTTTAGCATATTTGGTTTTCATTTGCAGCGAAGGCATTATGAAATCTTTAGGAGCTGCATTTCATTTGCATGGATAATTCATAAATTATTATCTTATGAATTTCTCAGTTGCATTCTCTCTTTTCTTATTCGTAGGATTTCTTAGTTTTGAGGAGGCTTTGTAAGTTTCTGAATCCTAAATCCATAAGCATAAAATGTACTTAGTCATTTTTATCTCAGAATACAAAAACCTCCAATTGTATTTCAATTATGTATAGTAATTTATCATATTTGACAATATTCAGAAAACTCATGTTATACATGTCTCATAAGAAATTTCATTTTTGAATAATACATCTTAAATTTCCTATGACAAGTGTTTTTTTATTGTTTTCGTTTAAAATACATCCTTACCCAATTAACTCAATTAAATGACAGGAAATTACGAGGATAAATAAAAATTTCAAATACTTTGTTAAAACAATTTAATAAAACTCAATTAAAAATATCATCAAATTTATAAAAGACTTAAACTTAATTAAACCAATTTTTTTATTATAACATAACTTCAATATAATAATCAATAAATTATATATTTAATAAATTGTGGAAAGATCAACTTCCACATTGTTAGTCTATTCTGTCAAAACCTATGGCCCAAAGGTAGTTTATGTAAGTATCGCGAAATGGCAAAATGATTGTCCAACTAAAATATTTGAAAGCATAATTGTCCTATCACTTTGAAAGGTTTCCAACAAAAAATGCATAAAAATCTCTGGCTCACTTAATTACAATTTTTTTAAAATAAAAAAAATTACAAAATTTCTATAATTCAAATCTAACAAATTTCACTCCAAAATTTCGCTCTTTTAATTAATTTTGAAAATAAGAAACTTAAATAATTTTTTCAAACAAAAAAAATAATAAATATTTTTTTTAAAAAAAAAAATAGGTAGGTGAGTTGGTGGGCTAACCTAGCCCACCACAGATTCAACCTGCATGAGTCGGGTTTAAATGAGCTAAGTTTAAATCTGACCCGCTTAAAAGAAATACAATTTTTTCAAATCCAACCCGACCTGAACCTGTGATAAGCCAAGTTGGCCTGCAGGTTGTGACCCATTTTGACAACTCTATCTTTACCACATCATAGAATTTTTCTTTGAAATGATCTCATCAACATTTCAAATCAATGTACATTTACACAAGACAAATAAAAATAATAATAATAATAATTTACAATTATTGATAAAGATTTTTTTAACTATTTTTTAAATATTCATATTTCGTTACTAGTTTTTCTACAATCTATTTTATTAATTTTATTATTTATTAAAAATCTATTTACAATAAATAATAATTATTTTTAAATGTTTTATTATTATAATAGTATAAAAGTTAATAGAAATATTTACTTTCATAACTGTTTTTCATATGTTGTATATACTTTTTAAAAGCACTTTTTTTAATAGTTATTATAATATCTAATTTTTTAATTATCATAACAAAAAGAGTGATACCATTGGGAGACATGCCCCTTAAGTTTCCACGCGTATTAGTGATCAAAATTTGGAATTTATAATTACTGTGTAGGTCGTTGAGTCTTCAAATATTTTCTTTTCTTTTGTCTAGTTGCTGCAGTGGATGATGACTCATGCTTTATATTCGATTGACTGGTGTCTGGCCAGAACAAGCAACTCCCACAGATATTTTGAGAGAATTGAATGGCTTTTCCAAAAGTTGACTTGCTTTTCATTCTGTGACAGAGCATTATTGTAGACTCATGGTAGAATATATATTTTCGTTTCTAATTGATTATATACAAAGAGGACATAAGAGTTGCAAAGAAGGGAGAGAAAATTGATTTCAA

Gene Sequence:

>Vu_02675(+)