Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02672 LG1 39755365 39755978 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to hypoxia, cellular response to hypoxia, defense response, signal transduction, response to wounding, cellular response to hypoxia, cellular response to hypoxia
Cellular Component   located in   cytoplasm
SNP Position Effect Amino acid change
G/C 39755393 missense_variant p.Gly10Ala
C/T 39755409 synonymous_variant p.Thr15Thr
G/A 39755412 synonymous_variant p.Arg16Arg
C/T 39755415 synonymous_variant p.Tyr17Tyr
C/T 39755425 synonymous_variant p.Leu21Leu
G/C 39755427 synonymous_variant p.Leu21Leu
G/T 39755435 missense_variant p.Arg24Ile
G/T 39755440 stop_gained p.Glu26*
G/T 39755454 missense_variant p.Glu30Asp
C/G 39755485 missense_variant p.Gln41Glu
T/C 39755551 synonymous_variant p.Leu63Leu
A/G,T 39755562 synonymous_variant p.Ala66Ala
T/A 39755565 synonymous_variant p.Ile67Ile
A/G 39755575 missense_variant p.Lys71Glu
G/T 39755577 missense_variant p.Lys71Asn
G/A 39755584 missense_variant p.Val74Ile
T/C 39755593 missense_variant p.Phe77Leu
C/T 39755598 synonymous_variant p.Ser78Ser
G/T 39755599 stop_gained p.Glu79*
G/T 39755616 synonymous_variant p.Ser84Ser
T/C 39755626 synonymous_variant p.Leu88Leu
G/A,* 39755637 synonymous_variant p.Leu91Leu
A/G 39755642 missense_variant p.Lys93Arg
C/G 39755655 missense_variant p.Cys97Trp
G/T 39755663 missense_variant p.Arg100Ile
T/G 39755665 missense_variant p.Tyr101Asp
G/A 39755673 synonymous_variant p.Arg103Arg
G/C 39755679 synonymous_variant p.Val105Val
G/A 39755686 missense_variant p.Val108Ile
G/C 39755725 missense_variant p.Glu121Gln
A/T 39755726 missense_variant p.Glu121Val
G/A 39755745 synonymous_variant p.Ala127Ala
G/A 39755749 missense_variant p.Glu129Lys
A/T 39755751 missense_variant p.Glu129Asp
C/A 39755761 missense_variant p.Gln133Lys
A/G 39755762 missense_variant p.Gln133Arg
G/A,* 39755772 synonymous_variant p.Lys136Lys
A/G 39755782 missense_variant p.Asn140Asp
G/T 39755821 missense_variant p.Ala153Ser
C/T 39755832 synonymous_variant p.Ser156Ser
C/T 39755853 splice_region_variant&synonymous_variant p.Ile163Ile
T/C 39755870 upstream_gene_variant
G/A 39755925 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02672.1
MAESSSSFAGSASPTRYDVFLNFRGEDTRENFISHLYAALQRKHIETYIDYRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILNCKKRYGRDVIPVFYKVDPSTVRKQEERYKAAFEEHEQRFKDDMNKVQGWKDALTEAAGLSGWDSNVISRS*


CDS Sequence:
>Vu_02672.1
ATGGCAGAGAGTTCTTCATCATTCGCTGGGTCCGCTTCTCCCACCAGGTACGATGTGTTTCTGAACTTCAGAGGGGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCAGCGCTGCAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGCGAAGAAATTTCACCTGCATTGCAAACTGCAATTGAAGAATCAAAGATCTATGTCCTCGTTTTCTCCGAAAACTATGCATCTTCGACGTGGTGCTTGAATGAACTGACTAAGATACTGAACTGCAAGAAGAGATATGGAAGGGACGTGATACCGGTTTTCTACAAAGTGGATCCATCAACTGTCAGGAAGCAGGAAGAAAGATACAAAGCAGCGTTCGAAGAGCATGAACAGCGGTTTAAGGACGACATGAACAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACGTTATCAGTCGGTCATAG


Promoter Sequence:
>Vu_02672::LG1:39753365-39755365(+)
AGCAAAATAACATTCATATCATATAATTAATTGAAAAATTAAACAAGTAAAATATATAAATTTAATATCTTAATTAGAAAATATAAAAAAATTTGAATACTCACATAATTAAATAAATTTAAATTTATTAAAGACTTAAACGTAATTAATCTAACTTTTTTTATTATCATATAACTTCAATATAACCTATACTAAATTATGTATCTGCATCACTTAACATTAACATACAATAAGGTTCAATTTTAACTCACTTTGTCAGTTTATTCTTATAAGAGTGATGTCATTCTCATTTAAATTTTTACAATATACTTTTATTAGAAAGAAGAAGAGAGACGAGATAAAGATAAATAAAGGTAAATCGTTGATACATGCATATAATATAAAGTTCACTCTTCCATATTACTCAGCAAGCTCAGTTGTTTACGTTTAGATAGATGTTATAATCGCAAAATTAGTGTAATTGTTCCCAACAATATTCTATCCAGATCACCAGGTTTCATTCTTCTTTCCTCGTGTTGGAATCTTCAAATGTTTTCAACCAGATTCCCTCGTGTGAAACTGGAGAATCGACCACGCACTTTCTTAATATCTTCTTAAAAGTGAGGTTTGCATTCCACTTAATTTAGTCTTATTTTTAGTGGATTCAGGACTTTCAACTCGATATGATATTTTCTCAAATTTCAGAGCAATTTTCTCAATTATTCTTGAGAGATATGATGAAGGAGAAAACGAAGTGGCTAATAATAGTTACGTAGAATATGATGAATTGCATATACAACTCACTGGAGGTGTGTCCTTAAACTTTCAAAGTCTCAAAAAGCTCTGTTTCATAGATCTCTCGAAGTGTTCTTCCCTCAATATTTTCATTTGACCTTTCTGAGATTAAATTCCTAAGGAAACTTTGTCTCAGTGTTGCTCAAAATTGCAAAATTTCCCTGAAATTAATGACACGATGGAAGAAAGATCTAGCGGTGCTCATCTTAGACAGCACATTCGTTATGCTCTTTTACAACTCCTCAATGGAGAAAGTAAACGTTGAAAAAGCTTTTTCTAACCTTTTAATGTACCAACTTGTTACATGGAGCTGTAAAACCAGAAAATTTTATTTGGTTAACGTGCAAGAGTGAAGATGATGTATAAGAAGTTATTTGTTGTTCTTGGTTTGTTCGCTTTGAGACACCTTGTTTTATTTGAGTGGTGACTTATAAAAGCTGTTGGCGCTTGATGGTTAATTCTTTACAAGTGTAGTTTGACAAGTTGAAGACAATTTATTTGAATTTATATAATATATATACGATTTTTTTAAGGCTATACAAAATATTTAATAATAAAATTATACGAAACCCATTATTCTTTACAAGAAAAAAAAGTGTAAATTAAAAACCCAATCTCAATTACATGTCTTTATAGTAAAAATAAATTACGTAAAATTGGAAAATAAATTATTAAATAATTAATACCCTACCCATAGTTTTTGTAAATGTTAAATATGATTTTAATCTTTTTAATTATATAAAAGTATAAATTTAATAAAAATATTTAATTTTTATGATCTTTTTTTATACAACTTTTAATAATATTTCTTATTATAATAATTATTATAATATTTAATTTTTAGTTTTATTTATTTTTTATTATCATGAAAAGAGGATACGGTGTATGTCCCTTAGTTTCTGCAGCTATTAGCGATATAAATTTAGAGTCATAATTATTGTGTAAATTGTTGACTCTTCAATTGATTCAATACTGTGTAAAATGAATATAAAATATTTATGTGTGTGAAATAATCATTATTTTTTTTTATCCATGGACAGATATTTTGAGAAAATTAAATGGCGTCTCCAAAAGTTGGTGTGGTTTTTATTATGTGACAGAGCAGCAGATATTGACTTTGGGTAGAATTGGTAGAAATATATACCCTCGTTTCTAATTGAGAGTATACAAATTTTTGGAATCCTGAGCCTTAGAGTTGCAGAGAAAGGAGAGAAAATTGATTTCGA


Gene Sequence:
>Vu_02672(+)
ATGGCAGAGAGTTCTTCATCATTCGCTGGGTCCGCTTCTCCCACCAGGTACGATGTGTTTCTGAACTTCAGAGGGGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCAGCGCTGCAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGCGAAGAAATTTCACCTGCATTGCAAACTGCAATTGAAGAATCAAAGATCTATGTCCTCGTTTTCTCCGAAAACTATGCATCTTCGACGTGGTGCTTGAATGAACTGACTAAGATACTGAACTGCAAGAAGAGATATGGAAGGGACGTGATACCGGTTTTCTACAAAGTGGATCCATCAACTGTCAGGAAGCAGGAAGAAAGATACAAAGCAGCGTTCGAAGAGCATGAACAGCGGTTTAAGGACGACATGAACAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACGTTATCAGGTCATTATATTTCTTACATCCACTTTTCAGATATATTGAGTATCTCTTTTCATCTACTCAAATTATGTTGATCTCATCATAGTTCAAGTATTTCTTTTTTTCATTTCTTTTAGTCGGTCATAG