Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02671	LG1	39749545	39750993	uncharacterized protein LOC114178119	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/G	39749559	missense_variant	p.Asn5Lys
T/C	39749563	missense_variant	p.Phe7Leu
G/C	39749567	missense_variant	p.Cys8Ser
C/T	39749571	synonymous_variant	p.Leu9Leu
C/G	39749590	missense_variant	p.Gln16Glu
A/T	39749592	missense_variant	p.Gln16His
T/C	39749595	synonymous_variant	p.Asn17Asn
T/G	39749596	missense_variant	p.Phe18Val
G/A	39749610	synonymous_variant	p.Glu22Glu
A/C	39749614	missense_variant	p.Thr24Pro
G/A	39749617	missense_variant	p.Val25Met
G/A	39749628	synonymous_variant	p.Leu28Leu
G/A	39749629	missense_variant	p.Ala29Thr
C/G	39749647	missense_variant	p.Gln35Glu
G/C	39749649	missense_variant	p.Gln35His
C/G	39749701	missense_variant	p.Gln53Glu
A/G	39749702	missense_variant	p.Gln53Arg
C/T	39749713	missense_variant	p.Arg57Cys
C/G	39749715	synonymous_variant	p.Arg57Arg
A/G	39749716	missense_variant	p.Ser58Gly
T/G	39749723	missense_variant	p.Met60Arg
G/A	39749734	missense_variant	p.Val64Ile
C/G	39749757	missense_variant	p.Ser71Arg
T/A	39749788	missense_variant	p.Tyr82Asn
C/A	39749790	stop_gained	p.Tyr82*
C/G	39749794	missense_variant	p.Gln84Glu
C/T	39749798	missense_variant	p.Ser85Leu
A/G	39749840	missense_variant	p.Lys99Arg
T/A	39749843	missense_variant	p.Ile100Lys
G/C	39749855	missense_variant	p.Cys104Ser
G/C	39749861	missense_variant	p.Cys106Ser
C/G	39749868	missense_variant	p.Asn108Lys
A/G	39749872	missense_variant	p.Arg110Gly
G/A	39749873	missense_variant	p.Arg110Lys
A/G	39749874	synonymous_variant	p.Arg110Arg
T/C	39749896	missense_variant	p.Ser118Pro
G/T	39749898	synonymous_variant	p.Ser118Ser
C/T	39749902	stop_gained	p.Gln120*
G/A	39749911	missense_variant	p.Ala123Thr
C/T	39749912	missense_variant	p.Ala123Val
C/T	39749916	synonymous_variant	p.Asp124Asp
C/G	39749929	missense_variant	p.Pro129Ala
C/A	39749930	missense_variant	p.Pro129His
C/T	39749939	missense_variant	p.Ala132Val
G/A	39749941	missense_variant	p.Glu133Lys
T/A	39749961	missense_variant	p.Phe139Leu
C/T	39749997	synonymous_variant	p.Asn151Asn
T/A,G	39749999	missense_variant	p.Met152Lys
G/T	39750000	missense_variant	p.Met152Ile
G/C	39750002	missense_variant	p.Cys153Ser
A/T	39750004	missense_variant	p.Thr154Ser
A/T	39750042	synonymous_variant	p.Leu166Leu
T/C	39750046	missense_variant	p.Tyr168His
A/T	39750047	missense_variant	p.Tyr168Phe
T/C	39750054	synonymous_variant	p.Cys170Cys
G/C	39750069	synonymous_variant	p.Ser175Ser
A/G	39750076	missense_variant	p.Thr178Ala
T/C	39750098	missense_variant	p.Ile185Thr
A/T	39750099	synonymous_variant	p.Ile185Ile
G/A	39750107	missense_variant	p.Gly188Asp
A/G	39750109	missense_variant	p.Ser189Gly
G/A	39750123	synonymous_variant	p.Leu193Leu
C/T	39750130	synonymous_variant	p.Leu196Leu
T/A	39750145	missense_variant	p.Cys201Ser
C/A	39750153	synonymous_variant	p.Ile203Ile
A/G	39750198	synonymous_variant	p.Ser218Ser
A/G	39750207	synonymous_variant	p.Leu221Leu
G/T	39750211	missense_variant	p.Asp223Tyr
A/T	39750212	missense_variant	p.Asp223Val
T/A	39750220	missense_variant	p.Tyr226Asn
T/G	39750222	stop_gained	p.Tyr226*
C/T	39750234	synonymous_variant	p.Ile230Ile
G/A	39750240	synonymous_variant	p.Gln232Gln
G/A	39750249	synonymous_variant	p.Pro235Pro
T/G	39750251	missense_variant	p.Phe236Cys
A/T	39750255	synonymous_variant	p.Leu237Leu
G/C,A	39750264	synonymous_variant	p.Leu240Leu
C/T	39750279	synonymous_variant	p.Cys245Cys
C/A	39750280	missense_variant	p.Pro246Thr
C/A	39750285	synonymous_variant	p.Ser247Ser
C/A	39750292	missense_variant	p.Gln250Lys
A/G	39750293	missense_variant	p.Gln250Arg
G/T	39750297	synonymous_variant	p.Val251Val
C/A	39750313	missense_variant	p.Leu257Ile
G/A	39750327	synonymous_variant	p.Lys261Lys
G/T	39750424	missense_variant	p.Asp294Tyr
A/C	39750437	missense_variant	p.Tyr298Ser
T/C	39750440	missense_variant	p.Val299Ala
G/A	39750441	synonymous_variant	p.Val299Val
G/A	39750463	missense_variant	p.Ala307Thr
C/T,A	39750489	synonymous_variant	p.Arg315Arg
A/G	39750490	missense_variant	p.Ser316Gly
C/T	39750492	synonymous_variant	p.Ser316Ser
G/A	39750493	missense_variant	p.Glu317Lys
A/G	39750495	synonymous_variant	p.Glu317Glu
A/C	39750499	missense_variant	p.Ser319Arg
T/C	39750501	synonymous_variant	p.Ser319Ser
A/T	39750504	synonymous_variant	p.Ser320Ser
G/C	39750509	missense_variant	p.Ser322Thr
T/C	39750516	synonymous_variant	p.Asn324Asn
T/C	39750528	synonymous_variant	p.Ser328Ser
G/A,T	39750596	missense_variant	p.Arg351Gln
A/G	39750605	missense_variant	p.Asp354Gly
G/A	39750614	missense_variant	p.Gly357Asp
C/G	39750644	missense_variant	p.Ser367Cys
C/T	39750651	synonymous_variant	p.Asp369Asp
C/T	39750657	synonymous_variant	p.Gly371Gly
A/C	39750670	missense_variant	p.Thr376Pro
C/T	39750671	missense_variant	p.Thr376Ile
T/A	39750675	missense_variant	p.Asn377Lys
A/G	39750676	missense_variant	p.Asn378Asp
T/G	39750678	missense_variant	p.Asn378Lys
G/T,*	39750690	missense_variant	p.Gln382His
A/T	39750691	missense_variant	p.Asn383Tyr
C/G	39750800	missense_variant	p.Ser419Cys
A/C	39750810	synonymous_variant	p.Arg422Arg
T/C	39750822	synonymous_variant	p.Phe426Phe
C/G,A	39750830	missense_variant	p.Thr429Asn
C/G	39750833	missense_variant	p.Pro430Arg
T/A	39750842	missense_variant	p.Phe433Tyr
G/T	39750844	missense_variant	p.Asp434Tyr
C/A	39750854	missense_variant	p.Ala437Glu
A/C	39750864	missense_variant	p.Leu440Phe
A/C	39750865	missense_variant	p.Lys441Gln
A/G	39750887	missense_variant	p.Glu448Gly
T/G	39750906	synonymous_variant	p.Leu454Leu
A/C	39750912	missense_variant	p.Arg456Ser
A/G	39750923	missense_variant	p.Asn460Ser
G/C	39750929	missense_variant	p.Gly462Ala
G/C	39750931	missense_variant	p.Glu463Gln
C/A	39750938	stop_gained	p.Ser465*
C/G,T	39750947	missense_variant	p.Thr468Arg
C/A	39750950	missense_variant	p.Thr469Lys
A/G	39750954	synonymous_variant	p.Glu470Glu
C/A,G	39750972	synonymous_variant	p.Ala476Ala
C/T	39750979	missense_variant	p.His479Tyr
T/C	39750982	synonymous_variant	p.Leu480Leu
A/C,G	39750987	synonymous_variant	p.Val481Val
G/T,*	39750989	missense_variant	p.Gly482Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02671.1

MKFLNKFCLSGCSKLQNFPEIEDTVENLAVLILDQTAIQALPSSLWRLVGLQQLSLRSCMNLEVIPSSIGSLTRLCKLDLTYCQSLQTFPSTIFKLKLKILDLCGCFNLRTFPEITESAQTFADINLTPTAAEELPSSFGNLAKLRSLQLNMCTDLESLPNSIVNLKYLCKLDCSGCTKLTEIPIHIGSLSSLMELSLSECGIVNLPESIAHLSSLKSLDLSDCKYLECIPQIPPFLKQLVALDCPSIRQVMSNRNLSDSKEGVFKFHFTNAQQLDSGARANIEEDARLRMTHDTYRYVFFCFPGTAVPHWFPFRSEGSSVSINEDLSFCSDDRLIGFALCVVFELLDTNRIIDRRGSFRYCLKFESDDDGTQIITNNDLLQNYFEWNGKERVVNQDHTFMWKFNLESLRRSGMNLRLSDARSFTFEITPYDFDSVANELKSVVTIKECGLCPLYRSGSNVGESSRETTEHRKRKAESHLVG*

CDS Sequence:
>Vu_02671.1

ATGAAATTCCTAAACAAATTTTGTCTCAGTGGTTGCTCAAAATTGCAAAATTTCCCCGAGATTGAGGACACGGTGGAAAATTTGGCGGTTCTAATCTTAGACCAGACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAACAACTGAGTTTGCGCAGTTGCATGAATCTTGAGGTTATTCCATCTTCCATTGGAAGCCTCACCAGACTATGCAAGTTAGACCTTACCTACTGTCAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAAGATACTTGATTTGTGTGGTTGCTTTAACTTGAGAACCTTCCCAGAGATCACGGAGTCGGCACAAACTTTTGCTGACATTAACTTAACACCTACGGCTGCTGAAGAACTCCCTTCCTCATTTGGCAATTTGGCTAAGCTTCGATCCCTACAGCTCAACATGTGCACTGATCTCGAGTCACTTCCAAACTCCATTGTTAATCTAAAGTATCTCTGTAAACTTGATTGTTCGGGGTGTACCAAATTAACAGAAATCCCAATACACATTGGTAGCCTGTCGTCATTGATGGAACTGTCACTGAGTGAGTGCGGAATCGTGAACCTTCCTGAAAGCATTGCTCATCTTTCAAGCTTGAAATCACTTGATTTAAGTGACTGCAAATATCTTGAATGCATCCCACAGATTCCACCGTTTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAGACAAGTGATGTCAAATCGAAACCTCTCAGATTCAAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCCACGATACATATAGGTATGTGTTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCCTTTCGCAGCGAAGGAAGTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGAATTGTTAGATACCAATCGAATTATTGATAGACGTGGTTCTTTTCGTTACTGCCTAAAATTTGAATCTGATGACGATGGCACACAGATTATTACAAATAATGATCTGTTACAGAACTATTTCGAATGGAATGGTAAAGAAAGAGTTGTCAATCAAGATCACACATTTATGTGGAAATTTAACTTGGAGAGCCTAAGGAGGAGCGGCATGAACCTTAGGCTCTCTGATGCTCGAAGCTTCACTTTTGAGATCACTCCATATGATTTCGACTCCGTTGCGAACGAGTTAAAATCAGTTGTGACAATAAAAGAATGCGGCTTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAAGGGAAACAACGGAACATAGGAAGAGGAAGGCCGAAAGCCACTTAGTAGGCTAG

Promoter Sequence:
>Vu_02671::LG1:39747545-39749545(+)

ACCTATGATAACTTCATAGCCAAACCTTCTTCAACCTCTTACTACTTCATACTTTAATTTTTGTGATTATATCTCCATTGATGCATAAAATATCTTTTTTCTATAATAATTTTGTATTTAATATTTCGGTCATAATACAACCTTAGATATCGCTCACCAGATACTCATAAAGGGGTCAAAACGTACCTATAAAAGGCCAAAATGCACATAAGGTCACACTCATAATGGTCATCAATGAAATCACATTATTCAATATATAACATCATGTATATCAAGTGTATACATATTCATGCATCTTATAGTCATCATCATCAACCTCATAGAATGACCTTGTTTCCTACTCCAAAAGGAAAATTTCTTTACTTCAATGATCACATAACTTGAGTGACAACAATTGCAAAGAAGAGAGAATTAATATGACTCTCTTTTGCTTGATAAACCTTTTGTGACTTGAATAAATATTTCTAAAGAAGAGAAACTTCAACCTCTTCCTCGCTCGAACGGTTTAGCAATGCTATTTGTTATAATATCTAATGAGTTCTTGAAGCATAAAGCACATTGCTTCATTGGTTAAAATTTAAGATAAGTTGAAAGTCTTATATTGTGTAAAAATGAAAAAGATGAAGAACATATTAGAACTCACAAACATGTTACTTCAAAATTTTGAATTAAAAAATATGTTTTAATATCTTATATGAGTTTATTTATTGTTCATTATCCCAATTATGTTTAAGTGAAAATATAAATTTAAATATTTATAGTGAAGTTTTTATTAATTTTATTTATTAATATGTTGACAAATAATCAAAATAACATTCATATTATATAATTAATTGAAAATTTAAACAAGTGAAATATATACATTTATTAAAGACTTAAACTTAATTAATCTTATTTTTTTTATTATCATATAACTTCAATATAACCTATAATAATTATGTATTTAATAGATCACGGAAAGATGGATTTATACATTGCCTGCATCCCTTAACATTAACATACAACGTACCTAAGGTTCAATTTTAACTCATTTTTCAGTTTATTCTTATTCTCATTTATAATTTTACAATATATTTATATTAGAAAGAAGAAGAGAGCGAGAGAAGATAAATAAAGGTAAATAGTTGATACATGTATAATATAAAGTATTTCCGAATTGTCATCTATTATAAATTACTTTCATCAGGTTGAAATTATTAGGATGTAATTTTAGATAGGAAAGAAAACATGTTAAATTTTGTGAAGTTTTATAATAACTATCAAATTTATAGCCACTATAATTTTGTTTGTTCAACTTAAACTCAACAGATAATGTAAGTAGGAGTTTATCGAAGAAAAATAGATAAGCTTCATTTTAGTTTTTTTTATTACCTGATTCATTTCCTTTTTGTGGCAGAGTTTACCAAAGTTGAAAAGGGTCAACCTGAGTTATTCTTGGAAACTTACTAGAATACATGACCTTTCCCTGTCACCAAATATTGAAGAAATAATTCTCAATGATTGTCGAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCACTTCTTTACGTTTAGAAGGATGTCATAATCTCAAAAGTGTAACTGTTCCCAGCAATATTCTGTCCAGATCACCAGGATCCATTAATCTTTCCAGGTGTTCGAATCTTGAAATTTTTTCAACCGGTCAAACCCAAATATCTTATTCTCCACCATCGTCATCATTAATCGCTCCAATATTCCCTCGCGTCAAACTGGCGCGTCAATTGCAAACTAGACCTGAAAATTTCATAAGATCCTATTTCAGGAGAATTTTCTCCATTACTTTTGACCGATATAGGGAAGCAGATGAAGAAGAACAAGTGACTAATAATAATATATACGAATATGATGAAATGCAGATACAACTCACTGGATGTGAGCCCTTAAACTTTCGAATTTTGAAGAAGCTCTGTTTCATAGATCTCAAAAACTGTTCTGACCTTACAATATTTCTATTTGACCTTTCTGAGA

Gene Sequence:

>Vu_02671(+)