Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02661 LG1 39668482 39671305 PREDICTED: receptor protein kinase TMK1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 39668489 missense_variant p.Arg3Lys
G/C 39668564 missense_variant p.Arg28Thr
G/A 39668600 missense_variant p.Ser40Asn
G/A 39668632 missense_variant p.Val51Met
G/A 39668634 synonymous_variant p.Val51Val
G/A 39668828 missense_variant p.Arg116Lys
C/T 39668877 synonymous_variant p.Phe132Phe
A/T 39668892 missense_variant p.Arg137Ser
G/C 39668945 missense_variant p.Ser155Thr
C/A 39668964 synonymous_variant p.Val161Val
G/T 39668991 missense_variant p.Arg170Ser
C/T 39669111 synonymous_variant p.Gly210Gly
T/G 39669177 synonymous_variant p.Ala232Ala
G/T 39669180 synonymous_variant p.Val233Val
T/C 39669294 synonymous_variant p.Asn271Asn
A/G 39669297 synonymous_variant p.Gln272Gln
A/C 39669353 missense_variant p.Asn291Thr
G/A 39669513 synonymous_variant p.Leu344Leu
G/A 39669607 missense_variant p.Val376Ile
C/T 39669666 synonymous_variant p.Leu395Leu
A/T 39669684 synonymous_variant p.Ile401Ile
T/C 39669688 missense_variant p.Phe403Leu
T/A 39669690 missense_variant p.Phe403Leu
G/A 39669691 missense_variant p.Ala404Thr
A/C 39669703 missense_variant p.Ile408Leu
A/C 39669742 missense_variant p.Asn421His
T/C 39669849 synonymous_variant p.Asn456Asn
T/C 39669870 synonymous_variant p.His463His
A/G 39669957 missense_variant p.Ile492Met
T/G 39670104 synonymous_variant p.Val541Val
G/T 39670117 missense_variant p.Ala546Ser
C/A 39670118 missense_variant p.Ala546Glu
A/T 39670126 missense_variant p.Met549Leu
G/A 39670128 missense_variant p.Met549Ile
A/G 39670131 synonymous_variant p.Leu550Leu
A/G 39670435 missense_variant p.Ile652Val
G/A 39670539 synonymous_variant p.Gln686Gln
G/A 39670668 synonymous_variant p.Leu729Leu
A/C 39670708 splice_region_variant&intron_variant
G/A 39670717 upstream_gene_variant
G/A 39670795 upstream_gene_variant
A/C 39670922 upstream_gene_variant
C/A 39670933 upstream_gene_variant
G/A 39670950 upstream_gene_variant
C/G 39671156 stop_gained p.Ser779*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02661.1
MRRHELGFGGLFFYDLLFVLSFFVISIRCQDANVMGILKSTINAPLSFEWVGQDICKWKHVVCDSSKRVKAIQIGNQNLQGTLPKELAMLTALTRFECQDNNLTGAFPYLSKSLQRLVIHDNNFNLFPSDFFKGMSRLQEVTIDNNPFSQWNIPSSLKDCVALQTFSAQRAGLAGTIPDFFGRDGPFAGLVFLALSDNFLEGGLPASLSGSSIENLLVNGQNGNSKLNGTLAVLSKMKSLKQIWANGNSFTGPIPDLSHHDQLYDVNLRDNQLTGVVPPSLVALPSLKFVNLTNNLLQGSPPRFKDGVAVDNNMDKGRNQYCTNVVEQSCSPLVNVLLSIVQPLGYPLNFAQSWQGNDPCANRWTGVICSGGNVSVINFQNMGLSGTICPCFAGLTSVTKIFFANNNITGTIPNELASLPNLQELDVSNNDIYGKVPSFREGVDVKYEGNPDIGKNEQTNSGHVGHVKNNNTAIIVGVTVMVVVLLVAGVLILVKFRRKAKYEGKLQQQSTIVIPPRYGDGNVAMINSGNISSLLSPSQSVYKGEASNMLIPIQILREATNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMQSTGFVDQKGQSEFTSEIAVLTKVRHRNLVALLGFCLDGSERLLVYECMPQGALSRHLINWKEEGLKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAGLAGHCCAREPHQRPDMSHVVNVLSPLVQVWKPSETNVHEAYEIDFDMTLPEALQRWKQFEDNSHTIDIDVTSSSRHLNANNTNSNP*


CDS Sequence:
>Vu_02661.1
ATGAGGAGGCATGAACTGGGTTTTGGAGGTCTCTTCTTTTATGATCTTCTTTTTGTTCTCTCTTTCTTTGTTATCTCGATTAGATGTCAAGATGCAAACGTAATGGGAATTTTAAAGAGCACCATCAATGCCCCTCTTAGCTTCGAATGGGTGGGTCAGGATATATGCAAATGGAAACATGTTGTGTGTGATTCATCAAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCAAGGGACTCTCCCCAAAGAGCTTGCGATGTTAACGGCATTGACCCGGTTTGAGTGTCAAGACAATAATCTTACAGGGGCATTCCCTTACCTCTCAAAATCCTTGCAGAGGTTGGTAATCCATGACAACAACTTCAACTTATTTCCCAGTGATTTCTTCAAGGGCATGAGCAGATTGCAAGAGGTGACAATTGACAACAACCCCTTCTCTCAATGGAACATTCCTAGCAGTCTCAAGGACTGTGTCGCACTCCAAACTTTTAGTGCTCAGAGGGCTGGCCTTGCTGGGACAATCCCAGATTTTTTTGGCAGAGATGGTCCCTTTGCAGGTTTGGTTTTCTTAGCTTTGTCTGATAATTTTTTAGAAGGTGGATTGCCTGCAAGCCTTTCAGGCAGTTCAATAGAGAATCTTTTGGTGAATGGACAAAACGGCAACTCTAAACTCAATGGCACCCTGGCTGTGTTAAGCAAAATGAAATCTTTGAAGCAAATATGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAGATTTGTCACACCATGATCAACTTTATGATGTTAACTTGAGGGATAATCAATTGACTGGTGTTGTTCCACCCTCTTTAGTTGCTTTACCAAGTTTGAAGTTTGTGAACTTAACAAATAACCTTCTTCAAGGATCCCCTCCTAGGTTCAAAGATGGTGTAGCAGTCGACAACAACATGGATAAGGGGAGAAATCAGTATTGCACAAACGTGGTGGAGCAATCATGTAGTCCCCTTGTAAATGTTTTACTATCTATTGTTCAACCTTTGGGGTATCCTTTAAATTTTGCTCAAAGTTGGCAAGGTAATGATCCGTGTGCAAATAGATGGACAGGTGTGATCTGTTCTGGGGGGAATGTTTCGGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATCTGTCCATGTTTTGCTGGTCTCACTTCGGTGACAAAAATATTTTTTGCTAACAATAATATCACGGGTACTATACCAAATGAACTTGCTAGTTTGCCTAATTTACAAGAGTTAGATGTTTCCAACAATGATATATACGGCAAAGTGCCATCATTTCGTGAAGGTGTGGATGTTAAATATGAAGGGAATCCTGACATTGGAAAGAATGAACAAACTAATTCAGGTCATGTAGGTCACGTAAAAAACAATAATACTGCAATAATTGTTGGAGTTACGGTAATGGTTGTTGTTTTACTTGTTGCTGGGGTTTTGATACTTGTTAAGTTTAGAAGAAAGGCAAAGTACGAGGGTAAGCTTCAACAGCAAAGCACAATTGTGATACCTCCTCGTTATGGGGATGGAAATGTTGCAATGATAAACAGTGGAAATATCAGTTCATTGTTAAGTCCTTCACAAAGTGTTTATAAAGGAGAAGCAAGTAACATGTTAATTCCAATTCAAATTTTGAGAGAAGCAACTAACAACTTTAGTGAGGGAAACATTTTGGGAAAAGGGGGATTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAACAGGATTTGTAGATCAAAAAGGGCAGAGTGAGTTCACGTCTGAAATTGCTGTGCTCACCAAGGTTCGACACAGAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAGTGAAAGACTTCTTGTGTATGAATGCATGCCTCAAGGTGCTCTTAGTAGACATTTGATAAACTGGAAAGAAGAGGGGCTAAAACCACTTGAATGGAAGACAAGACTTAGTATTGCATTGGATGTTGCTAGAGGTGTTGAATATCTCCATGGTTTGGCACAGCAGATTTTTATTCACAGAGATCTTAAACCATCCAACATTTTGCTTGGAGATGATATGCGAGCCAAAGTATCAGACTTTGGACTCGTTCGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGACTGGCTGGAACTTTTGGATACATGGCACCAGAATATGCAGGGTTAGCAGGACATTGTTGTGCAAGGGAGCCTCACCAACGCCCTGACATGAGTCATGTGGTGAATGTGTTGTCTCCTCTTGTTCAAGTGTGGAAGCCTTCGGAAACAAATGTTCATGAAGCATATGAAATTGACTTTGATATGACATTACCAGAAGCACTCCAAAGGTGGAAACAGTTTGAGGATAATAGCCACACCATTGACATTGATGTAACTTCTTCATCAAGACATCTTAACGCAAACAACACAAACTCAAATCCATAA


Promoter Sequence:
>Vu_02661::LG1:39666482-39668482(+)
GGTGACCAAAAAAATACCCCTTTGGCTACTAAACCGCAATTAAATATAATACAATTGAATTACTACAATTAACCAGTTCTTTATTCTTCTTTATTGGTCAATACACTCAGAGAAACTAAAAGCGCGCAGCAATTGAAACCATATTACTTTCGTGTAAACAAAACGCACACGCAAAACCCAAATCCAAATTCGCAAAAAAAAAAACAGAGATCGAAGGAAAAAAGGAGAATGCTCACATCTTAGGCAGACTAGTGGAGATCTCGGGCCAGAAGGTGTCGACCAAGTTGTTGAGGTTGGAGAGCGCGTGAAGCTTGAGCGAGAGGTGGGGCTCGTTGAGCATAGCCAGCATCCCACCTGCGGAACTCACCAAAGTCGTAGCCATGGTTGCGCGAATAGGAACTGAATTGACGAATAATTGCAACAGCTAGGGTTAGGGTTAGGGCTTGAGAATGGTACTTAACGGAACGAGCGATCTGAGAGGGTTGCAGAAGCAATTGCAAAAGGGTTTGGGTTTGGGTAGTTTTGGGAGTGAAATTGAAATGTGTACTTTGTTATATTAGGAGCATCTTCAATTCTTATTCAACACGAAATGGATCAATTAGTCAATTTTCTGTAAAATTTCAATTATTTTTTATCTTTTTATTCGAAAACACCTAATTAGCTAATTTCAGTATATGAGACCAAAATTTGAAAAAGAGGGTTAAGCCTTTATATACATTTATCATAGGTGATCTTGATTTAATTTACTGACAATTTTTTTTTCAAATTTCCTGACAAATAAATATTTTAGAAATTCATTATAAATATCTTAATATCTTGAAACAAAACAAAAATGAATGAAGAAAAACAAAGTTAAGAAATAATATATGTTATTATAAACTATTGTATACCCAACACGTGTAATATAATTTAACAGACATTTTTAATAAATGGATCTCCTGTTTAACAATTTCAATTTATAAATATGCATTATAAAACATAAAACTTAAATTTAAAAATATGTAATCAAAAGTATGAATTAGAAAATAAATATATAGAGTACTTTTAATAATAGATTCTAAGAAATATTTAGTCTGTTATAATACACAATATATATATATATATATATATATATATATATATATAATATTTTATTTTCAAGTATATAAACACTTTTTTTTTTCAAAATTGTACATAATCATAAAAAAAATTATGAGAAAAGTGAAAGGATTAAAAGTAAAAAACTGCTTCACAATAATTTATAAATGATATACCACTTTGGAAAGCTTTTATATTGCATCATTGAATTTAAGCTCAAAAACTGATATACTCGTAAATGACTGTCCTATTTAAAGTGTAAAAATAGAATAATTTTACTTTAATCATAAATATTATTTAGTCTCCACTTTGTGTAACAAAAGAAAATAGAATAAGCATATTTCATAATTATCTATAAACTGTTATCTTAAATATAAATGTAGGTATATTATTTGAAAACCAATTTGTTTGTCAAGTTGAGATCTTCCCATAAAGAAATAATCACTTTGTTCATTTTTTTTTGTTATACTTTAGTTTAACAAAATTAAGTATTTAACATCCAAATTAGCATATGTGTATAATAATAATAATAATAATTAAAAAAGAAATATTTAGTGAGTATATAAAAATATGATTTTATTTAATTTTTTAATGGGAATAATTAATTTACGACAAACATTATGTTCAGTCCGAAGAGTGGAATTAAAACATGCAATGCAAACCACTGATTTTTGAAACTTCCAGAGAATAGGGGTCCACACATGCATGTGTCTGTCTTCCACCATTTTCTCCATAACCTAAACAAAACTTCCTCTGCAATTTCTTTCCTTCTGCATTTCGCTTCTTTCTTTGGAGGGCTTCTCCTCCTTGTCCTTATCAGATGCAATGTGATAAAGTCCCCCTTAAACCCTTTCGGGATTCTCCATCATCATTCCGACCCAGCTTTCTTTTTCTTCATATGATTTGAAAAAGGTGATTAAATA


Gene Sequence:
>Vu_02661(+)
ATGAGGAGGCATGAACTGGGTTTTGGAGGTCTCTTCTTTTATGATCTTCTTTTTGTTCTCTCTTTCTTTGTTATCTCGATTAGATGTCAAGATGCAAACGTAATGGGAATTTTAAAGAGCACCATCAATGCCCCTCTTAGCTTCGAATGGGTGGGTCAGGATATATGCAAATGGAAACATGTTGTGTGTGATTCATCAAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCAAGGGACTCTCCCCAAAGAGCTTGCGATGTTAACGGCATTGACCCGGTTTGAGTGTCAAGACAATAATCTTACAGGGGCATTCCCTTACCTCTCAAAATCCTTGCAGAGGTTGGTAATCCATGACAACAACTTCAACTTATTTCCCAGTGATTTCTTCAAGGGCATGAGCAGATTGCAAGAGGTGACAATTGACAACAACCCCTTCTCTCAATGGAACATTCCTAGCAGTCTCAAGGACTGTGTCGCACTCCAAACTTTTAGTGCTCAGAGGGCTGGCCTTGCTGGGACAATCCCAGATTTTTTTGGCAGAGATGGTCCCTTTGCAGGTTTGGTTTTCTTAGCTTTGTCTGATAATTTTTTAGAAGGTGGATTGCCTGCAAGCCTTTCAGGCAGTTCAATAGAGAATCTTTTGGTGAATGGACAAAACGGCAACTCTAAACTCAATGGCACCCTGGCTGTGTTAAGCAAAATGAAATCTTTGAAGCAAATATGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAGATTTGTCACACCATGATCAACTTTATGATGTTAACTTGAGGGATAATCAATTGACTGGTGTTGTTCCACCCTCTTTAGTTGCTTTACCAAGTTTGAAGTTTGTGAACTTAACAAATAACCTTCTTCAAGGATCCCCTCCTAGGTTCAAAGATGGTGTAGCAGTCGACAACAACATGGATAAGGGGAGAAATCAGTATTGCACAAACGTGGTGGAGCAATCATGTAGTCCCCTTGTAAATGTTTTACTATCTATTGTTCAACCTTTGGGGTATCCTTTAAATTTTGCTCAAAGTTGGCAAGGTAATGATCCGTGTGCAAATAGATGGACAGGTGTGATCTGTTCTGGGGGGAATGTTTCGGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATCTGTCCATGTTTTGCTGGTCTCACTTCGGTGACAAAAATATTTTTTGCTAACAATAATATCACGGGTACTATACCAAATGAACTTGCTAGTTTGCCTAATTTACAAGAGTTAGATGTTTCCAACAATGATATATACGGCAAAGTGCCATCATTTCGTGAAGGTGTGGATGTTAAATATGAAGGGAATCCTGACATTGGAAAGAATGAACAAACTAATTCAGGTCATGTAGGTCACGTAAAAAACAATAATACTGCAATAATTGTTGGAGTTACGGTAATGGTTGTTGTTTTACTTGTTGCTGGGGTTTTGATACTTGTTAAGTTTAGAAGAAAGGCAAAGTACGAGGGTAAGCTTCAACAGCAAAGCACAATTGTGATACCTCCTCGTTATGGGGATGGAAATGTTGCAATGATAAACAGTGGAAATATCAGTTCATTGTTAAGTCCTTCACAAAGTGTTTATAAAGGAGAAGCAAGTAACATGTTAATTCCAATTCAAATTTTGAGAGAAGCAACTAACAACTTTAGTGAGGGAAACATTTTGGGAAAAGGGGGATTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAACAGGATTTGTAGATCAAAAAGGGCAGAGTGAGTTCACGTCTGAAATTGCTGTGCTCACCAAGGTTCGACACAGAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAGTGAAAGACTTCTTGTGTATGAATGCATGCCTCAAGGTGCTCTTAGTAGACATTTGATAAACTGGAAAGAAGAGGGGCTAAAACCACTTGAATGGAAGACAAGACTTAGTATTGCATTGGATGTTGCTAGAGGTGTTGAATATCTCCATGGTTTGGCACAGCAGATTTTTATTCACAGAGATCTTAAACCATCCAACATTTTGCTTGGAGATGATATGCGAGCCAAAGTATCAGACTTTGGACTCGTTCGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGACTGGCTGGAACTTTTGGATACATGGCACCAGAATATGCAGGTAGATTAAACGTAACTTTGTTTCTCATGCATCAAAATACAACTAAAAGATACTCAAAATGTGTGTAAATATTCAATGCACTAATATGAGAATGTCATGCATAATTGTGCAGCTACTGGGCGACTTACAACAAAGGTTGATGTGTATAGTTTTGGAGTTATTCTTATGGAGATGATAACAGGAAGGAAGGCACTTGATGACAGTCTACCAGAAGAGAACATCCACCTCGTTACATGGTTTCGCAGGATGTTAATAAATAAAGATTCATTCCCAACAACCATTGATCCAACAATTAAGGTTGATGATGAAACGTTACTGAGTATTAGCATTGTTGCAGGGTTAGCAGGACATTGTTGTGCAAGGGAGCCTCACCAACGCCCTGACATGAGTCATGTGGTGAATGTGTTGTCTCCTCTTGTTCAAGTGTGGAAGCCTTCGGAAACAAATGTTCATGAAGCATATGAAATTGACTTTGATATGACATTACCAGAAGCACTCCAAAGGTGGAAACAGTTTGAGGATAATAGCCACACCATTGACATTGATGTAACTTCTTCATCAAGACATCTTAACGCAAACAACACAAACTCAAATCCATAA