Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02656 LG1 39625253 39629439 PREDICTED: protein SUPPRESSOR OF FRI 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, negative regulation of flower development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of flower development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of flower development, negative regulation of flower development, negative regulation of flower development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, cytoplasm, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, protein binding, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein heterodimerization activity, DNA binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein homodimerization activity
SNP Position Effect Amino acid change
A/T 39625277 5_prime_UTR_premature_start_codon_gain_variant
T/A 39625311 5_prime_UTR_variant
C/T 39625340 5_prime_UTR_premature_start_codon_gain_variant
A/G 39625361 5_prime_UTR_variant
A/C 39625387 5_prime_UTR_variant
G/A 39625407 synonymous_variant p.Lys5Lys
T/A 39625416 synonymous_variant p.Val8Val
T/C 39625498 missense_variant p.Phe36Leu
C/T 39625500 synonymous_variant p.Phe36Phe
T/C 39625551 synonymous_variant p.Ile53Ile
T/G 39625692 intron_variant
C/A 39625696 intron_variant
G/C 39625882 intron_variant
G/T 39625895 intron_variant
A/T 39625910 intron_variant
G/C 39625914 intron_variant
G/T 39625916 intron_variant
T/C 39625923 intron_variant
C/T 39625962 intron_variant
A/C 39625976 splice_region_variant&intron_variant
A/C 39626291 intron_variant
A/G 39626348 intron_variant
C/A 39626432 intron_variant
G/A 39626435 intron_variant
A/G 39626448 intron_variant
C/T 39626502 intron_variant
T/G 39626531 intron_variant
T/C 39626564 intron_variant
A/G 39626598 intron_variant
A/T 39626651 intron_variant
C/T 39626669 intron_variant
C/T 39626671 intron_variant
A/T 39626683 intron_variant
C/T 39626704 intron_variant
T/C 39626715 intron_variant
T/A 39626735 intron_variant
A/G 39626736 intron_variant
C/A 39626785 intron_variant
G/C 39626966 intron_variant
G/A 39626971 intron_variant
A/G 39626987 intron_variant
T/G 39627079 intron_variant
G/T 39627499 missense_variant p.Gln186His
T/A 39627613 synonymous_variant p.Val224Val
A/G 39627813 upstream_gene_variant
C/G 39627890 upstream_gene_variant
A/T 39627979 missense_variant p.Thr288Ser
C/G 39627989 missense_variant p.Ser291Cys
T/A 39628155 upstream_gene_variant
C/A 39628156 upstream_gene_variant
T/C 39628161 upstream_gene_variant
T/G 39628165 upstream_gene_variant
C/T 39628444 3_prime_UTR_variant
G/C 39628519 3_prime_UTR_variant
C/A 39628942 3_prime_UTR_variant
C/T 39629097 3_prime_UTR_variant
C/T 39629344 3_prime_UTR_variant
A/G 39629428 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02656.1
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMRPPPMGTGYPPRSALPAIPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPAPYTQQPLFPVQNVRPPLPATAPAALQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQSSTYSAPPLPSSVPSVTPVMSTNVPVDTHLSTHSSVTSSYQAIGVPGAAASNSHTYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF*

>Vu_02656.2
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMRPPPMGTGYPPRSALPAIPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPAPYTQQPLFPVQNVRPPLPATAPAALQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQSSTYSAPPLPSSVPSVTPVMSTNVPVDTHLSTHSSVTSSYQAIGVPGAAASNSHTYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFTSNQMSRLYASCFQIQLFRHYFLFKKVHSE*


CDS Sequence:
>Vu_02656.1
ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAAGTGTGGTGTTACTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGTCACGTCTGCCACAAGAAGCTCTCAACTGCCAGCGGCATGGCCATTCACGTCCTCCAGGTCCACAAGGAATCGGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAGGGGATTCCACCAGATATCTTGGCTGCACATTATGGCGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTATGGGTACAGGATATCCTCCACGATCAGCCTTGCCTGCAATTCCACCAGTTTATAATCCAGCTGTACCCCTGCCACCAAATGCTTGGGTGGTTCCGCCTCGACCACAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCAGCAGCACTGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCGGTCCCAGTTTCACAACCTTTGTTCCCTGTTGTTGGAAACAACCATACAACGACCCAAAGTTCAACATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCTGTAACAAGTAGTTACCAGGCTATAGGAGTTCCAGGTGCAGCAGCAAGTAATTCACACACTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGACGCAGCTATAGACAAGAGGATACTCGAAAGCAGGCTGGCTGGTCGAATGGCATTTTAG

>Vu_02656.2
ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAAGTGTGGTGTTACTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGTCACGTCTGCCACAAGAAGCTCTCAACTGCCAGCGGCATGGCCATTCACGTCCTCCAGGTCCACAAGGAATCGGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAGGGGATTCCACCAGATATCTTGGCTGCACATTATGGCGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTATGGGTACAGGATATCCTCCACGATCAGCCTTGCCTGCAATTCCACCAGTTTATAATCCAGCTGTACCCCTGCCACCAAATGCTTGGGTGGTTCCGCCTCGACCACAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCAGCAGCACTGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCGGTCCCAGTTTCACAACCTTTGTTCCCTGTTGTTGGAAACAACCATACAACGACCCAAAGTTCAACATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCTGTAACAAGTAGTTACCAGGCTATAGGAGTTCCAGGTGCAGCAGCAAGTAATTCACACACTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGACGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTAGACATTATTTCCTATTTAAAAAGGTACATTCTGAATAA


Promoter Sequence:
>Vu_02656::LG1:39623253-39625253(+)
AACATTTTCTAAAAAGAATAGAGAAATTAGTGAACATGATGGTTTAGCACACAAAATCTGGTTGATGATTAATCATAAGCTCCAATAAGATTATGGTGACCATTAATTGTGCCGAAAGTTAGAGAATGATATTCATATCTTTTATGATGGGAACTATTAAAGACAGAACAATATCATTAGGTTAGAAATAATTGATGGAAGCTGCAAAGCATAATACTTATACATAGCCTCAAAATGAATGCAGACATCGATGCACCTTTTTTCCTTTCCTACTTCCAACATGAACATCCATGCACTATTTATGTATGTTAGTCCACATTATTACTCTAAGAAAATATACAGCTTTTTAGAGAATATTTTAACACAAAATTTCAAATATTTTATGAGAAAATATATTATATTTATATTAAATTTCTTTTACTGTATTAACATTCTTAATTTACAAGAAAAAAGTTATTAACCATTATAAAATTTTATATTTTACTTAAAAACAATAAGTTTTTTAACTTATATTTTTTCTTAAATTTTTTATATTCTTTTTTCAATTTAGTTTTGAATTGGATATTATCGACTTGATTTTGGTTAGTATGATATATGTTTTACACTGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAACGCAACCGGGATCACGACTTTATTTTTTTTAAATGTTTAATTTTTTCTAAAAAAAATAATATAAAGAAACTATTAAAAGACAAAAAAAATATTTTTTGTTTTATGAACCCGACAAGAATTGACCTTGCTCCTACTTACATCCATTTATAATGGACAATCAGGGATCACGTAGTTCTTTATCTAGGAAAAGATTTTTGACAAGTGAATCCGAAAAAGATTTAGTTTATCAAGATTGACATCTTTTTTCTGGTTTTGAAGATTTTTTGTATTTTTTAAATTTATTTAAAAATGGTGGGAAAAAATAAAGAAACCGGCCATAGGTCGACACATACTTATAAAAAAATTATGATTTAAAAAACATTATTTGTGTTTAGATAAAAAAAACTTCAGATTACACTAAAAAGAGAAAAAAAAAAGAATGTTGCAGAGGCGACATACCTTTTTAGCTTTCACTATTCCCCTAGTTCTCCTTGGTGATCCCTTTTGGCAGAGTTCCTCCAATCTGAGAGCTTAGTTTTCTCTATATTATCTCTGTTATTTCAAAATATTTCTCCCCCTCTCTCCTTTTTTTTCTTTATGACAGAGTGCGTATTTATATACGCACATTATAATATTGTGAAAAAATTGCTTTAATTGTGAATTAAATGACAATAAAACAAAATAGGGAAAGAATTGCTTTAATTGTGAATTAAATGACAATAAAACAAAATAGGGAAAGAAATAGTTATGGTTACCAGAAAACAAATCATATTTTCCTCTTTAAAAACAACTGATGCAACAAATTATGTTAATATATTATTTTAATTATTGTTTATAATTATTAGCATAATATTAATTCAAATCATTACCATATTAAACTAACATTTCAAAAAATATTGTATTAAAGTCATCATTTTATCCTTTTTACCTACCCGGACGAAATTGGGTGTTGACATATATAATTGTATAAATATAAAAAAATCAAGTAACATTATAAAAAATCAAATAATTATAAAAACTATAGATAAATGATAAAATGTATGTTCTATAAATAAATTATAAGAACTAAATAAAACTTAATATTAACTATAATAAATAAAAAATATTTTAATAATTTAAAATGAAAACGAAGACGAGTAAATCTCTCACTAAAGTCAGAACGATTAGAATTATATATTTTTTATTAGTATTATGGTACACTTAGTAGTATGGGGTGCAATAAGAAAAGTGTGTGAATGAATAAGATTACTTTTGGGCCACTTGCACTTGGGCCACTGAAGACACTCACATTGATTTTGATTGTTTCTTATGTGAACTTCCATCACAAATTCCTTCA


Gene Sequence:
>Vu_02656(+)
AAACCGGGCCGCCATTGAAACTTTAGGCTTCTGAATCCGTGCCCTAGCTTCTTCTTCCTCTTCCCTGCCATTGCAGGGCACAGGCCTCGGGCTCCAACCTTCGCCACAAACTCAATTATCGAGTGATCGGAATCACTATCATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAAGTGTGGTGTTACTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGTCACGTCTGCCACAAGAAGCTCTCAACTGCCAGCGGCATGGCCATTCACGTCCTCCAGGTCCACAAGGAATCGGTCACCAAGTATATCACTATTTCCCTCTTTTTTCTTTCCCGCTTTGCATTTTTTTTTATTATAGCGTAAGTCACACTTTAAGGAAGAAAGAGAGTTAATGTAATTTGTACCCCTAACCATCGCCTTATTGTTACATCTTGCTAGAAATGTAGTAGATGTTATGATTGGATTATGTTTAAGGAATATGAGGGATTGATTGGCTGTATGGTGGTTTGATTTCGGCTGAATTCTAATGATCTATCCCTGAATGGATATTTTGGTGTTAAGATAGGGGGGTACTTTAATCAAGAGATTTGCTTCTTAGAGTGTGGGTGATGGTAAATTTTATGCGATTTGAGAAAATATTACTGTTCTGCTCCTTGTTATTTATTGTTTTGATTTTCCTTTTTTATTCTTTATCAGGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAGGGGATTCCACCAGATATCTTGGCTGCACATTATGGCGAAGAAGGTAATATCCTCTGATGGCTTCTGTCATAAGCGTATAGTTGTTTTTGGTTTTTGTATTTTTCACTCATATCTGGCTTATGATATGATTTATTAGCTACCAGTTGTGTTTGCCGGAGAAGTGGGTGTTATTTTTCCACTAACCCTTTTGGATTAGAGGTGTCAAAAACCCTCTGCTGTGGATCGATCTGCGTCTGGTTGGAAAAAATAAATACTATTTTTTAATTGTGGCTGAAAGTGAATGCAATTCACTTAATTCGTTCTGCGAGAATTGGGTTAGAAGTGGGTTGACCCGGAAGTCACCAACAACAACCTTATGTTATTTTTCAATCACCTACGTTCAATAATGTTTGACTGGTTTGAAAGCTTAATTTGTTTGTTTGCCCAATTATATTGGTTGACACTTTGATTTTCCTTTACTATCCTTATAATGATGCTGATGCTGGCTAAAATTGTGAACACTTTAAATCTACTATTATAAATAGATGTGTCGAGTCAATCCATTTGATTGTATTGCAATAACTATAACTATATAAAATAACTTGAGAGAACAAAATATTAGTCGACTTACCAACCTATGTTGAATTGAGCCGCGTTATGAAATCATTGCTCACCAAAAAATGAACCTAATTGAGTTTGGAGAACAAAATATGTTTATATAAGTCAACCCATGGTGAATTGAGTCAGGTTACAAAATTTCTGGCTCACTGCTTACGTTGACTCATTTTTAGCCCAAGATGTGATGAGTCAAAACTTGTGAGCCAGGTTGACTCCCTTTCATACCCCTATTTTTTATAAAAGCATGTTTTGCTTAATTTGTTGTAAGATCATGCCAGATATATATTGTGACTGCTGTATGTATTTCTTGTTTCTTGATTGTGTTTTGTTGTCATGGGAGTATTTCTCCGAAACTCAGGCCACAACATTCTATGAATATTGTTAGTGTTGGCAGGAAGAAACATAAAATGTTTAATCTCCTTTCTCACAATTATTTGTATTTTTTTTTTAATGCAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTATGGGTACAGGATATCCTCCACGATCAGCCTTGCCTGCAATTCCACCAGTGTATGTTACTACTCTATGTTAATGTCTCTATTTGTATTCATCTTCTTTGACTCGCAAGGAGGAAGTTGTAAATCTTGCATATTTTACTTATTTAAAATTATCAGTGGCACAAAAATTGCTCACATGCTTAATTCCTGTGATATAGTTATAATCCAGCTGTACCCCTGCCACCAAATGCTTGGGTGGTTCCGCCTCGACCACAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCAGCAGCACTGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCGGTCCCAGTTTCACAACCTTTGTTCCCTGTTGTTGGAAACAACCATACAACGACCCAAAGTTCAACATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCTGTAACAAGTAGTTACCAGGCTATAGGAGTTCCAGGTAACCTTTGTATTTTCTTTCCTTTGAACAATTATGACTGATACCTTGATTCAGAACTGCAGGAGGGTTTTTTATAACAAGGGTTTTTTTATTGAGATTTAGTTTTTCTCCCTAGAGATTAATCCTATGTGATTCTAGTGATTTCATTTCCTTCTCACTATTTGTTTCTTATATAGGTGCAGCAGCAAGTAATTCACACACTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGTAAGCTATGTTCTTGATAAAATCTGTGTTCCGTTTTAATATTTTCTTTGTTGGTAATGTTGTGACGTTTGGTTACTGTAGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGACGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTAGACATTATTTCCTATTTAAAAAGGTACATTCTGAATAAATTTATAATCCTTTTTAAAAGTAAAATAAATGGCAAAGTAAATAGGATCATTTTGACAGTCCTCGCCTGTTTCAAAACTGAATGGGTAGTGCATGCTATTTTATTTTGAATGGCTGCAATACAAGCTATGCTCCAATTCTTGTGGGCATCTAAATATTCAAGTAGGTGCTGTATTATTTTCTTTTGGTAATTAATTATAATTACCACCACATAATTTGTGAAGCTTGCTGCAAACAATCAACTTCGTGATCTTTCATCCCAGCATATGTACACCATAAAAGAGTATGTATATATGATTTTATTGGGTTTGGTTTTACCAATGCTATTCTTTCTCCTCCCTGCTTGATTCCAAAGTTTGGGGTTTTGGGTGGAAAATGGTCTTACCCATCAGATTTTTGCCCATTCGTAGCATCATTACAATTTATTTTATGGAACAAGTGAATTCAGACTTGGCACAGGTCAGCTTCTTTCGCAGAGTTTGGATCTCTTGCATAAGACCATGCTGTAGAATATTCAGTTTATTGTTGTATTTGGGGTCCATGATTACATGCTGATCATTATTATCATTTTTTTTCAGATGAGCTCCATTGACGCAGCTATAGACAAGAGGATACTCGAAAGCAGGCTGGCTGGTCGAATGGCATTTTAGGTCAATCCTGATACATAAATTCTTGTCAATTTTCTTCAGTGATATGGGCTCAAAACGGCATTTTAATAAGCTCGAAAGCGTGTGTTCAAGATTCCTTTCCTTAAGATCCAGCAAGTAATACTGTTATTGGTGCGATTCTTTTGCCAAAAAGAGGAATGGGCCCTACTGTCATAGTGGAATCAAAGGAAAAGATTGAAATTGGTCTCATTTCTAACTTCTTAGGAAGTTGCAAAGCTTTTGTTTGTTTCTTATTTCACACCTTTTTCTCCCTTTGATATTTGTAGTCAACCTTTAGGACATGATACTTAAAAGAGTACCGCATATTTATGTAATCTAGATTAAATGTGTTGGGTGGAAATTTGACGGTAATTATTGGTTATTGGTTATATGCTTCAAATTTAATTTTTCTCTCT