Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02616 LG1 39189108 39191198 PREDICTED: WUSCHEL-related homeobox 1 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   plant organ development, plant organ development
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/G 39189275 synonymous_variant p.Gln56Gln
G/T 39189376 intron_variant
T/C 39189382 intron_variant
T/A 39189449 missense_variant p.Val70Asp
C/A 39189571 missense_variant p.His111Asn
A/C 39189716 missense_variant p.Tyr159Ser
T/G 39189721 stop_lost p.Ter161Glyext*?
A/T 39189736 missense_variant&splice_region_variant p.Arg166Trp
T/A 39189949 intron_variant
T/A 39189950 intron_variant
C/T 39190270 intron_variant
G/A 39190617 intron_variant
G/T 39191001 missense_variant p.Gly294Cys
C/T 39191048 synonymous_variant p.Asn309Asn
A/T 39191112 missense_variant p.Ile331Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02616.1
MVGYNEAADFTMADYALNGRKLRPLMPRPVSSPNNTPNANSPCLTRIHHGNDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDGTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAKESVSIQRAAKAAVADCRTDGWLQFDEGELQHTRNLMERNATWHMMQLSCPSPPTVSPHFINAPPTISTASMSTTPSVTPRIMDPKLIKTHDLSFFISPNRENGVIHLSSINTYTPDDNSVESQTLQLFPVRNGDESSDNINHQKETDVSVSAMNAPSQFFEFLPLKN*


CDS Sequence:
>Vu_02616.1
ATGGTTGGTTACAACGAAGCTGCCGACTTCACCATGGCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCCGTGTCTTCTCCTAACAACACTCCCAACGCCAACTCTCCATGCTTGACCCGTATTCATCATGGCAACGATTTCTTCTCACAATATCATAATCTGGCATCAGTCGCAGATCAGGGCAAGAGAGAGTTCAACCCTCCACCCGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTGAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCGTCTGCGGAGCAAATCCAACAAATCACGGCACAGCTTCGAAGGTTTGGAAAAATTGAGGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCGGCTGAGGGTCATCACACCCGTGACTTTGATGGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAGCACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCATATGATGCAGCTATCTTGTCCTTCCCCTCCTACAGTTTCACCCCACTTCATAAACGCACCTCCCACCATATCTACTGCTAGCATGTCCACCACACCCTCAGTTACACCAAGAATAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAATGGTGTTATCCATTTAAGCAGTATCAACACCTACACCCCAGATGATAACTCTGTGGAGTCTCAAACCCTTCAACTTTTCCCGGTCAGGAATGGGGATGAAAGCAGTGATAACATTAACCACCAAAAGGAGACAGATGTATCAGTCTCAGCAATGAATGCTCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA


Promoter Sequence:
>Vu_02616::LG1:39187108-39189108(+)
AGAATTAATCATGCACATGTTGGAAAGCAGACATGCAAGAGTAGGTGCAGGTATTAGCTAGCATATGTGAATGATTCAGATTCACGGGTAAGGCGTAATGTAGAAGAGAGAACGGAGAGAAAGAAAAGAGGAAGATTACATTGAATATGACTTGACAAGTTGGGTTGATTGATGGTATGTTAGTTATGGGGTTTGTTTTATTATTGTTTAAACATGCAAAAAGACGAAGAGGCATTGGAGAAGAAAACATTCCCATACACAATGTAATAGAGAGCATTGACTAAATGGAAATGCAGGTGAAGGGTCTTAATAGAGAACAGTTTAGGGGGCCACCCTAGGGAGAAGTAGCAATGGAAATGTATTGAGTAGGTGAGTGTGGTGGTGGTGCTGCTTCTTTTGTTTTGTTTGGTTTGGTTTTCCATAGCCAGCCAGAAATGACAACTGATTAGGGCTTTTATTGGCAGTGGCAGAAGTAGGGGAAATGCACAACATTACAGAATGACAGTGGAGAGTGGATATGGGATATGCATTGTGCTGTAGTTTGCATGGTACTCTCATTACATATTTTGCATGCACATCTCATAAATAACAGACATACAAATAGTAGGGATTCAGAATTTGCAGGGTGTAGGCCCTCCACCCAACGAAAAGCTAGAAATAATTAATCAATTATAGCTTTCAAATTCCATATATCAGCTGTGACAGAATACTTCCTCTCCCAAGCTCGAGAATTGAGTCATTCCTTCATAATGACCGAGGGATTATACCTAAGAGGCAAAAGGAGAGAGAAGCAATCTACACATTTCCCTCCAATTAATACATCTGGACCATGCAAAAAGATTCCAAATGGGTAACATAACATATCATAACATAACATAACATGCAGTAATTTTCCTTGCTCAAAGATTTTAACTTTTAGCTACCTAGCCACCCTACTTCAACAAAACAACATCTCAGCTCTCTCACCCTTTAAAAATAACTGTTGGGAAAGGAAAATATACACAGAATAGTGATAGATATATACAAACACACTACTATGCATACATAATGTGGTGAGATGAAATTGAAGAGAGATAGATATATATATATATAGAGAGAGAGAGAGAATTGAAGTCCGTACAGTGGATGGTGCAGCAGAGAGAGAGTGTGGTGTGCATGGACAGCATATTAGACAAAGAAAAGGTTAAGGAGTAGCAGAGAGGGAGAGAGGGGCAGTTCGGATTGAGAATTAGTGTGAAAGGCACGAGACGTGAAGGGAACAATAAATGAGAGGGGGAAAAGAGAAGGGGTGATGAGGCTCATGATAACCCTCATGATCGTCACGTCGTTTTTCATTCGCTACTCCCAAAAATCTCCCAGAATTCCACGCTTCCTCACTGACTCCCTTCTTTGCTTTTCTTTTTTGCCTTTGTCCTCTCTCCCTCTTTCTCTCTCTAAATACCCTAGTCAACCTCATGTCCCCCTCACTTTGTCCCATATTAAACCAACAACACCATCCTTTCTCGTTCTCTCTCATTCTCTCCCCCATATGCTAGCTAGAGAGAGAGTGATCAATCCCCATCTCTGAATCCTCTCAGACACAAAATACTTCACTCACTTCTCTACTTTCAGCTTCAACTTCAACTAACTATACTCACTTTCAACAATGGCCAAACCCTTCACCTCTTTCTTCCCATCAACCCATGCCATATATAAGCCTTCTCTACTTTTCATTTAAACCACCTACCTCTTACCATTTTCTGGGCCACCTTCACATCACTCACTGCCTTCCATCCTCCACACCCCTTTTTAGATTCTCCACTTTAACTCCCCCACTCCTCCATTTCAATTTCCATCACCCACAACACAACCCCCCCTCTAACTATTATTGCACTTCATTGATTTTAGATCCCATATATAGGTACGCTACCTTCCTTCACCTATTTATAACCCCTTTCCACCACCCCAACACTTCCTCAAACCCTAACTTTTCGTTTTTATTAACTCAACACCAATGTGGA


Gene Sequence:
>Vu_02616(+)
ATGGTTGGTTACAACGAAGCTGCCGACTTCACCATGGCTGATTATGCACTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCCGTGTCTTCTCCTAACAACACTCCCAACGCCAACTCTCCATGCTTGACCCGTATTCATCATGGCAACGATTTCTTCTCACAATATCATAATCTGGGTATGCTCCTTTCTTTGAGTTCCCCCACCCACCAGCCCACCACCCTTTTTCTTTACCCTTTCTCTTTCTCTGGTTGTGTTTGCATGCGAGATATGGTGTGTGTATAAAGAGTTCTTTTTTATTATTATTAGCATCAGTCGCAGATCAGGGCAAGAGAGAGTTCAACCCTCCACCCGTAGTGGTGAGTTCGAGGTGGAATCCGACCCCGGAGCAGCTGAGGGCATTGGAGGAATTGTACAGAAGAGGGACAAGAACACCGTCTGCGGAGCAAATCCAACAAATCACGGCACAGCTTCGAAGGTTTGGAAAAATTGAGGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGGGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCGGCTGAGGGTCATCACACCCGTGACTTTGATGGTACTCTTGAAAAGAAAGACTTAGGTAAAAACCGCACGACATAATTACCACCATACTTGTTTCTTTGCATGAAAGTGACAACTAATGAGAGGCTCTCATGTCTTGATTTGCAATGCATGACCGATGGCTTCTTTTGTTTCTTTTTCATTTTCTCCAATTGAGTTTTGTTTGTTCTTACATGCCTTGCTTATCTTTTCTTTTTTTTCTCATCAGGATTGTTGCTTGAGATGTAAAGTTATATTCTTTTTTGTTTTTCTTTTTGTCTACAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACGCTTGCAAAGGTCTATTATTCTATATCCTCCTTTGTCTTGGTCCTGGTTGATGAAGTAATTAAACCTTTTTTTTCTTTCTGAACTTGGGATTTTCACTACTTCATCACCCAAAAGTGTTATGGTATGATAAGGGTCCATTAAGCAGTGTTTTAATTAATTATTGGCACATGATTACTGGAGAATGAAGTTGATGTTGGAAACGTTATAGAAAGATATGCACTAGCTGGCTAGCTTTAGCTAGGGAAAGGACCCTAACAAAAGCTTTGTTTGTTGGGAAATGAAAAGGTCCTAAAAGCTGCATTCCTTCCTTTCTGTCGGGGCTGCTGTTATGAAACTTAGCTGGGCTTTTGGGGCTTGTGCTTATTCATGTCATTCAGGCCAGTAGCTTTTGGACACTCCATACAATATTCTATGGAATTGAGCACCCGTATTGATGGTGGAAAAGACAACTCTCACCCTACTTTAATTTGACTTCTCATAGACCATGCAACTTTATTTGAAAATACTACCAACTAGGAGTGCATGCCCATTTGAAATCTGTGCTGTCCAATAACTTTTTCACCTTTGCTCTTTGGCTTTTTACCACACATGTTTAGGTTTTCACTAGTTTGTTTTCATTGCATGCCTACATTTAAAATCTTCAGGAATCTGTTTCAATACAAAGAGCAGCAAAAGCAGCGGTTGCAGATTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAGCACACAAGAAACTTAATGGAGAGGAATGCCACGTGGCATATGATGCAGCTATCTTGTCCTTCCCCTCCTACAGTTTCACCCCACTTCATAAACGCACCTCCCACCATATCTACTGCTAGCATGTCCACCACACCCTCAGTTACACCAAGAATAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAATGGTGTTATCCATTTAAGCAGTATCAACACCTACACCCCAGATGATAACTCTGTGGAGTCTCAAACCCTTCAACTTTTCCCGGTCAGGAATGGGGATGAAAGCAGTGATAACATTAACCACCAAAAGGAGACAGATGTATCAGTCTCAGCAATGAATGCTCCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA