Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02563 LG1 38839831 38843007 PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   trichome branching, trichome branching, plant-type cell wall loosening, trichome branching, plant-type cell wall loosening, trichome branching, trichome branching, trichome branching
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, lipid binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 38839908 missense_variant p.Val758Ile
G/T 38840343 missense_variant p.Pro613Thr
G/A 38840369 missense_variant p.Ser604Leu
A/T 38840629 intron_variant
C/A 38840630 intron_variant
T/C 38840838 missense_variant p.His514Arg
A/G 38840840 synonymous_variant p.Ser513Ser
T/A 38841912 missense_variant p.Asn272Ile
C/A 38841917 missense_variant p.Lys270Asn
A/G 38842785 synonymous_variant p.Cys42Cys
T/A 38842916 missense_variant p.His31Leu
C/T 38842919 missense_variant p.Arg30His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02563.1
MEYGSGGGGSQSAGEHDASDSQEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQAMVDHVLAPSPSLNLDLLSAGTSSSVPNFPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRYVLNSDSYDRIFPKPNSCPKTPNLRLEASRDSAVVLMNSLALVDMFMDPNKWMELFPTIVSVATTIQVISSGMMGGSLQLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMITSDSTVDNPGGVISSAEGKRSMMKLAQRMVTNFCGSIGTASGRRWTTISGLNEILIRVTVHKSSNPGQPNGVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQITNGQNAGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFIILPDGETEQEGDGASTSSNANRNKARSGGSLVTVAFQILVSSSPSAKLNMEVTTVCNLIGSTVQQIKASLSCPT*FFIVGSWIPNIHQSAHPSFLFLYHTYLNTLVVQTSLSTSTTSWVCWNFEFPLISSHLIWGTRLLIYYC*


CDS Sequence:
>Vu_02563.1
ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGGGAACACGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGCTTGATAGAGTATCCAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCAATGTCGTGTTTTGGAAACCAAGCGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTTTCTGCGGGGACTTCCTCTTCTGTGCCAAATTTTCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTTCGGCTGGTGCAGACAAATGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGATATGTCCTTAATTCTGATTCCTACGATAGAATTTTCCCCAAGCCCAATAGTTGCCCCAAGACTCCTAATCTTCGCCTTGAGGCATCACGAGATTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAAACAAGTGGATGGAACTTTTTCCCACTATTGTCTCAGTTGCAACGACTATTCAAGTCATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGACGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGGTCCGCACTTTCGGTCTCGTCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTTGAACATGTAGAGATCGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTTGCAACTCTCCAGAGAATGTGTGAAAGACTTACATATCTGATGATTACATCCGATTCAACCGTGGATAATCCTGGAGGAGTAATTTCATCCGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTGCAAGTGGCCGGCGATGGACCACAATCTCCGGGTTGAATGAAATATTAATCAGAGTCACAGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAACCAATGGTCAAAATGCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAAAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCAAATGGGTTTATCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTCTGGGGGTTCGCTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAGTTCTTCATTGTTGGATCTTGGATTCCTAACATTCATCAATCTGCTCATCCCTCTTTTTTATTCCTCTACCATACCTACTTAAATACGCTGGTGGTTCAGACATCATTGTCTACTTCTACTACTTCTTGGGTTTGTTGGAACTTTGAATTCCCTCTCATCTCATCTCATCTTATCTGGGGCACAAGACTCCTCATTTACTATTGCTAG


Promoter Sequence:
>Vu_02563::LG1:38843007-38845007(-)
TTTTCTTTTTAACCCTTAAAAGACAAAATTGCTTCCTTCCATACAAGATACGTAATAATATTTAAAACTTACAAAATAAATATATAATAATTAATAATATTAATTTTCATGCAACTTTTACATTTAATAAAATCCTTAATAGAGTTGAAAAAAAATAGTGAAATTAAATTTATTGTATTAACTTTTTTGTTATACTAAACATTTAGTAAAGAATGTAAAGTAATGATTTACTTGCGAATTTTTAAAATACCTTCTATCAAACAAAATTAAAATTGTGTATAAATTGTCTAAGAATAACACGATACAATGAAATTTACATTTTTAGGGGAATATGGCTGTCGTATGATACGAATTTGTATGTTTTATTTTTGTTTTTGTTACTTAAAATATACTATACCTGATTTTACCCAAAATAACGTTTGATACATAGCAAAAGTATGACTAGAGAATGAGTTCATACTGAATATTAATATTTTGAGAGAGAAAAAATCTGAACTGAATTATTGATAAAATGATTGGTAGATTTGTTCATACCATGTATTGGTATATCTGATAATGTATTTTTGGTAAGTTGAGATTTAGCAGTGAATGTGCAGACAGAGAAATTTGTAGAATCTTGAATGCAAATATCTGATACCCAATCTTGTTTTTATACCAAAACCCTGTCTTGTACTTTTCCTGTATTGGCATGTAAAAAATGACATGGCGGAGTAAAACATATGGTTAACCAAGAAGAGAAAAAGAAACAGGTAAGGCCAAAAATTAGTCAAGATTTCAAATTTATTTCCACTGTTTTTATTTTGTGTTATTCATAATGAAGGGCAAATAAAAACGGAAGCAAAATGAGGGATTTGTTATCTATATTTGGATGTTTTGGTAATATTCATGAAGGGATAAAATAAATATTCTGTAACCACCTCTCAATTTGGACAATATTTTGTGATACACAACAAATAATCCTGCCCTATAATTTCCAATTTCTTCTCTGTCAATATTATTCCATTTCAAATATCAAAATATAATAATGTATATAATTTTAATTCACCAAATTTAGTCCCTGAATTTTATCATATATTATGATTTAATTCCTCTATTTCTCTCACATCTAAATAACGTCACAATTTTTGTTTGCATGAATCGTTTTTTACTTAATTAATCCGGTCTGATGAGTAAGCATGTGATAATTGTGAAAAGAACTATTTACATATCAAGATATTTTAAAAAATGTGAACGAAATTAAAATTATTTTATCCTGATACTGGAATATTTAAATTATATATATATATATATATATATATATATATATATATATATATATATATATAAAGTAAAAGGATAAATACTGTATTTAAGTCAAAATCTAAAGGTATATTTTAAAAATGCACGAGTACTAAAGAAAATAAAAATTGAAAGAAGTGTATCAAATATATAATATCAATTTTTATTTTGAAAGCTTACAATATTTTTATTGACCTAATCAATGATTAGAAAACAAAACATATTGCGGTATTCAGTTCAGTGGATGGAATTGAGGGGAAACAACGATGGTGGAAGTGAAATAAACATACATTAATTCTGAAATTTTAACAATATACATTATATAACGGAGATGTAATAATTTTCCAAAGATAAGAGAAATAAAAAATAAAATAAAATAAAATTTGATAATTGAGAGGAAGTGGGAAGATAAAAAGAAGAGTGAGAAGGAGAAAGAAGAGCGCAGCGGCGAGGTAATTTAAAGGTGGTAAAGGGCATGCCATTCTCATCTCATTCATTTCACCACTTTTGGTTTTGGCTTAAGAGAATTGAACGCTACCTTCTCCCTCCTTTCTTTGAAACCTGCTTCCAACACTAAGCGAACAAGAGTAAGAGGAAGAGCAGTGAGTTAGAGTTAGTTGGTTGGAAGTGACAACACACGTAGTGTACTATACAGACAGACATTCATTGATTCCTACATCAGAGGGGTGTCCCTGTAGGCCTTTCTAAGAGCTGAATTGAGA


Gene Sequence:
>Vu_02563(-)
ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGGGAACACGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCGTAAGCCACCATCACCCTCCTTCGTTTTACACTTCTTTTTCTTTTCTTTTTTCTTTCTTTTTTTCTACCATTTCGCTTCTCTTGCCTTTTGTTCAGAATGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGTACCTATGTTTTCATGTGTTTTCATGTCTCCAATGTCTCCCTTTGCTTCTTTTGTTCCAATTCTAAATTATTGACTTGTCTGGATCAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGGTTTCTTGAATTTCGTATCATCAAAATCATAACTCCTCCAATTTTTATCTCCATTTCAATCGCTGGTTATTATTAATACAATTTAATTTTCAGCTTGATAGAGTATCCAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCAATGTCGTGTTTTGGAAACCAAGCGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTTTCTGCGGGGACTTCCTCTTCTGTGCCAAATTTTCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTTCGGCTGGTGCAGACAAATGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGATATGTCCTTAATTCTGATTCCTACGATAGAATTTTCCCCAAGCCCAATAGTTGCCCCAAGACTCCTAATCTTCGCCTTGAGGCATCACGAGATTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAGTATGTTTCCCTCACTCTTTCTGTACCGAAGGCCTCTTATTTAGCTTTCTGAGTTGCTCATTTGTCACAAATGATTTTGCAGAACAAGTGGATGGAACTTTTTCCCACTATTGTCTCAGTTGCAACGACTATTCAAGTCATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGGTAACTTGGACTGGGTGCATATACTTTTATTTTATAAATGTTTGACACCGGTTTCCCTTCAAAGCATTCAGCTTTGTTTTTTCTCTATCTTGCTTTTCAGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGACGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGGTCCGCACTTTCGGTCTCGTCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGGTAAAACATATTAAACAAGTCAAGTCATTGTCGGCTAGAAACCCTTTACATAAATTTGCAGTTAATATTTTAAGCTCTCTGTCCTGTAGATTACTTGGGTTGAACATGTAGAGATCGAAGACAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTTGCAACTCTCCAGAGAATGTGTGAAAGACTTACATATCTGATGATTACATCCGATTCAACCGTGGATAATCCTGGAGGAGGTATACAAATAAATACATCTCTGTAATGTAATAAATGTTTAATTTTCTAGGATTAACATGGGATTTAAATTTCAGTAATTTCATCCGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTGCAAGTGGCCGGCGATGGACCACAATCTCCGGGTTGAATGAAATATTAATCAGAGTCACAGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGGTTGAAAATAGTCAAAGTTATTAATTGTTCGACATATTTGAATATATGACCTCTTGGAGAGGATTTTTAAAGTTTTTTTGTTGTCCGTTTAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAACCAATGGTCAAAATGCTGGTAACAGCATATCAGTTCTTCGAGTAAGACCATCTCTTCCTATCCTTCCTGACCGACCCATTTGATCAAACTATGTTTTCTCGTGTAACTTTTATCCCATCATTGGCATATATATATATATTTATGTAGGCTTTCAACACGAGTCAAAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCAAATGGGTTTATCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTCTGGGGGTTCGCTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAGTTCTTCATTGTTGGATCTTGGATTCCTAACATTCATCAATCTGCTCATCCCTCTTTTTTATTCCTCTACCATACCTACTTAAATACGCTGGTGGTTCAGACATCATTGTCTACTTCTACTACTTCTTGGGTTTGTTGGAACTTTGAATTCCCTCTCATCTCATCTCATCTTATCTGGGGCACAAGACTCCTCATTTACTATTGCTAG