Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02441 LG1 33737266 33738249 PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to water deprivation, ethylene-activated signaling pathway, cellular response to salt stress, cytokinin-activated signaling pathway, response to water deprivation, red or far-red light signaling pathway, regulation of transcription, DNA-templated, response to water deprivation, regulation of cell differentiation, cytokinin-activated signaling pathway, response to water deprivation, response to osmotic stress, ethylene-activated signaling pathway, red or far-red light signaling pathway, cellular response to salt stress, cytokinin-activated signaling pathway, response to water deprivation, response to cold, response to osmotic stress, red or far-red light signaling pathway, cellular response to salt stress, response to osmotic stress, response to heat, response to water deprivation, ethylene-activated signaling pathway, response to water deprivation, regulation of transcription, DNA-templated, response to water deprivation, ethylene-activated signaling pathway, cytokinin-activated signaling pathway, response to osmotic stress, regulation of cell differentiation, response to light stimulus, cellular response to salt stress, response to heat, regulation of transcription, DNA-templated, red or far-red light signaling pathway, response to water deprivation, regulation of transcription, DNA-templated, response to salt stress, response to salt stress, response to cold, response to wounding
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, protein binding, sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 33737422 missense_variant p.Thr53Ala
T/C 33737484 synonymous_variant p.Asp73Asp
C/T 33737526 synonymous_variant p.Gly87Gly
C/A 33737533 missense_variant p.Gln90Lys
A/C 33737551 missense_variant p.Ile96Leu
G/T 33737815 missense_variant p.Ala184Ser
A/C 33737822 missense_variant p.Asp186Ala
C/G 33737829 synonymous_variant p.Ala188Ala
A/C 33738037 missense_variant p.Lys258Gln
C/T 33738069 synonymous_variant p.Ala268Ala
G/A 33738129 synonymous_variant p.Val288Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02441.1
MAATMDLYNGQPQVQSDPFRGELMEVLEPFMKSPSSTPSLSSDSALPSTSTSTSYSYSPSPLSLPPHPNFYSDPSSSYLFQTQTLIGFEQQPGSVIGLNHLSPFQVSQIQAQMQAQSQTSLSLNFLGPKPVAMKQVGGPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCLGEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARASSKKSKAARNPTKDPNPNLVCKAEPELEPEAEPVLSPESDGSVDSSPLSDLTFDVSEPQWEDASAYFNLQKFPSYEIDWDSL*


CDS Sequence:
>Vu_02441.1
ATGGCAGCTACGATGGATTTGTACAACGGACAACCACAAGTTCAGTCGGATCCATTCAGAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCTTTATCTTCAGATTCAGCTTTACCTTCAACATCGACTTCTACTTCATATTCCTACTCTCCTTCCCCTCTCTCACTCCCTCCACACCCTAATTTCTACTCAGATCCTTCCTCCTCCTACCTATTCCAAACCCAGACCCTAATAGGCTTTGAACAGCAACCCGGTTCTGTTATCGGGCTCAACCACCTTAGCCCGTTTCAGGTTTCTCAGATCCAGGCGCAGATGCAGGCTCAGAGCCAGACCTCCCTCTCCCTCAACTTCCTGGGTCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGACCTCCGAAGCCCACCAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAAAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTGAAGGGCTCTTGCCTCGGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGGCATCATCCAAGAAGTCAAAAGCAGCTCGGAATCCGACCAAGGATCCCAACCCGAACCTTGTTTGCAAGGCCGAGCCCGAACTTGAACCCGAAGCCGAACCTGTTCTGTCTCCTGAAAGTGATGGTTCTGTGGATTCTTCTCCGCTATCAGATCTCACCTTTGATGTCAGCGAGCCGCAATGGGAAGATGCTTCTGCGTATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA


Promoter Sequence:
>Vu_02441::LG1:33735266-33737266(+)
CAACTAGTAATCAAACTTCTAAGCTTATGGGGACTTATGTACATAGTTGACCTAGTAAATATGTTAAGTGGCATGACACAATAAGGTCCATTCAACACTATTGACCTAAAGTGATTACATATATATTCTAAAATATATTTGTTGGCATAAATATTCATATATGTACATATCCGACCCAAATATGCTAAGTGGCATAGCCTAACAAGGACATTACTAAATCTCAACAGTTTTATTATATCCTTTAATAACCATTAATGTCTTTTAATATCATATATCTAATAAATGATATTGTATATTTAAATCACATAAATGACACAAGGCCAAGAGATCCTATAAATACACATTGGATTTCCTCATTTTTCAACCTTCATGAGCTTACGTAAGATTCTACAATCCAATCACATTTTGCCACCTGTCTAAATGCCACACTTTAGATTCTAGTAAGAATAATATATTAACAAAATATATGACCAAATCTCAATAATTTGATTGCGTTATACCATATATGTATATAATATTAGGTTAATCAGTTAAGATATCACATTATTATTATTATTATTTATTATTTTATTGATTATGATATATATAATAAGCTATTATTTTTATTGATATTATTTAATATCATCTTGATATTATCTGTTTTTATTAAATAAGTCATAGATCCAAAAACTCAATAATTACACATAATATTTCATCAGAAAATAAACATAATTTTCTTATACTCATTACTCTATTTTCATAGATCTAAAGCTCATATACGGATTTAAACAAAATCTTTTGTAGATGGATATTTTTTCATTAAACAACGAAGATTTTGATTCTAATAATTATCAACAACATTCAAACTATGACTTATATCTTATCATCTCTAAAAATATCTACGCTATGAAGTATGTTAATAACAATATATATATATATATATATATATATATATATATAATATATATATAATATATAATATATATATATATATATATATATTAAACAAAAAAATATATATGTAAACAACTTTCTTTTAATTACATAAATGTTTTGAAAAAATATTAAAAATTAAAAGAGTACGAGAAAGTTAGATACTAAAACTGAAAATATTATAAAATACAATGAACGAAATTATAAAAAAATAAAAAATTAATAAATTATTGAGTTAAAAAAAATAGAAGTAAAAAAAATAAGGAGAGTTAAAGGGATGCCTGGAATTGAATGAAGGGTAGGGTGTGAACGCGCAAAGACAGAGTCAAACTGGCTTCGGAGGAACGTTAAAGACAGCCACACCTGAAGGATGGCGTGGCCACGTGTCTTCTGCAGACAACAACCGGCGCGTGTCTTTCATTCATTGGCTCTCAGGCTAATCATGACTTAGCTGTCTTGCTTGCTGCCAAAATTCACCCCAAACTACCCCTTCTCACTGCCATTACACTTTTCAATTAATTTACCACTCAACACTCATATTCAACTTGGACTCCTCCTATATAAGCACACCCACTTTCAACCACAAATCCAAGAGTGACCGAGAGATTCTCACCAAACAAACATTTTCTTCCTCACTTCCCTTTTCTCCTTCAAAATTTCTGCGACTCTCACTTCTCTGATCCTCTCTCTCTCTACTCTCTCTCCCTCCCCCCTCTGTAACGCCCCGCTTCTCTGAATCCCTTTCTGTTAATCATCTGTCTTTCAGCGCGTGATTTTTTGGGTTTGCCTCTATTCTCTCACAGAACAAACTTCAAAGGATTTCTCCAAAGCCAGGTGTTTTCAGAATCGAGATCCAGGTTTTTTCTTTCAGTTTTTTACTTCAGAATCATTCTTTTCTTTTCTCAGCCACGAGGGTTGTTTTTGATCCCTCAAAGCTCTGTTTTTTTTCTTTCTTTTCTCTTCTGAATTTTCTTCGGATTATAGGGGTTGTCTATTATAAACCTCTTCCAAGCTTTTTGAATTTTCAAAATTTGGAGTACTGGAAAGAAAATTTTATCCAAGATTTGTGTGTAGTTGGTAATTTTGTA


Gene Sequence:
>Vu_02441(+)
ATGGCAGCTACGATGGATTTGTACAACGGACAACCACAAGTTCAGTCGGATCCATTCAGAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCTTTATCTTCAGATTCAGCTTTACCTTCAACATCGACTTCTACTTCATATTCCTACTCTCCTTCCCCTCTCTCACTCCCTCCACACCCTAATTTCTACTCAGATCCTTCCTCCTCCTACCTATTCCAAACCCAGACCCTAATAGGCTTTGAACAGCAACCCGGTTCTGTTATCGGGCTCAACCACCTTAGCCCGTTTCAGGTTTCTCAGATCCAGGCGCAGATGCAGGCTCAGAGCCAGACCTCCCTCTCCCTCAACTTCCTGGGTCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGACCTCCGAAGCCCACCAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAAAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTGAAGGGCTCTTGCCTCGGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGGCATCATCCAAGAAGTCAAAAGCAGCTCGGAATCCGACCAAGGATCCCAACCCGAACCTTGTTTGCAAGGCCGAGCCCGAACTTGAACCCGAAGCCGAACCTGTTCTGTCTCCTGAAAGTGATGGTTCTGTGGATTCTTCTCCGCTATCAGATCTCACCTTTGATGTCAGCGAGCCGCAATGGGAAGATGCTTCTGCGTATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA