Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02388 LG1 32211953 32213084 PREDICTED: protein TRANSPARENT TESTA 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   flavonoid biosynthetic process, anatomical structure development, regulation of gene expression, flavonoid biosynthetic process
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 32212093 stop_gained p.Arg188*
G/T 32212470 intron_variant
G/A 32212475 intron_variant
C/A 32212502 intron_variant
A/C 32212516 intron_variant
A/T 32212597 intron_variant
G/T 32212598 intron_variant
A/T,G 32212601 intron_variant
T/A 32212607 intron_variant
T/A 32212663 intron_variant
T/A 32212711 intron_variant
G/A 32212720 intron_variant
T/A 32212992 missense_variant p.Lys31Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02388.1
MNQNQLQPLPLLSSFLGSSPEEALLQNQNAKPHHGQVEDVTVALHIGLPNNSSGGSTNDHGFVNATTHAPSNYWIPTQEQILVGFSHFSCPVCCKTFNRHNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHFKRKHGSKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHMKAFGFGHTPFTSSSDAM*


CDS Sequence:
>Vu_02388.1
ATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTTAGTAGCTTCCTAGGTTCCTCTCCCGAAGAAGCTTTGCTACAAAACCAAAATGCTAAACCACATCATGGTCAAGTTGAGGATGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGTGGTTCCACCAATGATCATGGATTTGTGAATGCCACAACTCATGCTCCTAGCAACTACTGGATACCAACTCAAGAACAAATCCTTGTTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCTGCAAAACCTTCAATCGCCACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGGAGAGGGCCAGACTCGCTGAAGCGAACCCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCGCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCTCTGAAGGACTTTCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCTCCAAACCCTTCACGTGCCGCAAGTGCGCGAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATGAAAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG


Promoter Sequence:
>Vu_02388::LG1:32213084-32215084(-)
CCAAACATAGATAGGATATCTCATACCGGATACGTGATACCAGGTATTGGGTATCTCGAGGCTAGTAAAGCTTTCATCAAAAGTACTAAATACTTTGTAAAAGTCAAGCCGCGAATACTAAGGACGGAATCCCAAAAGAGTAAGTCCAAATATGTTACACGTCAAACACTGATGGTCGAACACCAAGTACCGTGTTTCTTCAACTGAATATTAATTGTCATTTGCCGATGGATGCGCTCCTTGCTAGAACTTAGTCTTGCTTATCGAAACTTATTTCTGCCTGCCAAAGATATCAACACGCTACATACCTTAACCAAAAATAATTGTAAATTGTTACAAATAAAATGCCCATGATAAAAAATCATCCAAAAAAAATTCCATAATTAATATAATACTTATATAAATATTATTTTAATTAAGTTTTAAGACATATTTTTTACGTTAACCATTGATTAGAATTTCTTACTAAACTTTGACTTCAACTTCAGAAATTATTGTTCAAACACCTTATTTATAAATAAGACGAGTAATGATAAGAGAAAAAAAATTTTAAAGGACAAGTAGTTAAAGTTCTTATAGTTAAAAATTTCTTTAAATAATACCTCCGGAATTACAATTCTCAATTGATGTGTCTTCAATATATGATATTAAGTGTTCGTCGACATGAAGATGTGTTCTTAAGTGCATTCTGGACTAACATCTTCGCCTAATTTTTATGTCATATATGATTAGAAAATAATAATATTATTTGACTTCTGACAATTTTGTGATACTTGATTGTGTCGTCTACACTTTGATATTCGTGCCAATTATTGCTTATAATTTAGATTTTGAAAATATCTTATTGAAAACTTTTAAAAACTAAATATTATTATTAAAGAACCAAATATTAATTCGTCAAATACTCTGAATTGCGCCCATTTTTCATAATTTAATTTTTTTAGAAACAAAGTCTTTAACTTTTTAAGTTCACTGTCACGATGCAAGGATGTGTAGCAAAATCTCTCGGAATCTTTTATTTTGAAATCATAAAAGAGAATATTATATTTGGTAAGTAGTTAAGCTAGGACATGGAGCAAGAGACGCAAGTTTTAGACAGAGGGAATGCTGTCCCCACAAATTTTGAAGATTATAGAGTACTACTATATGTAGTTTGTACTATAATATTGCTAATATTGTTGATTTACCTTTACTGTATTATTATGTCATTAAATTATTGTCCTTCAGAAACTCGAATGCAAAACAAACTTTAAGAACTTAGAATTCTGAGATATTATTTCAACAGTAGGAGTAATCGTAAATATATAGCAGTGTCAAAAGTATTATAATTTGTGTCCATACACCAAATTTCTGCTGTTGTCAGATGCTGTGAATCCTTTCTAATACCCAAATTGTTAAATATAAATTACAAATACAAATGCAGAGTTAATAAGAACTACAATTGTATAGCATTAACCTCATTAGTGAGAATTTTACAGTTGTATAACAAAATAAATCTCCTTAAAAAGTTTGGTTAGTTTTAATTAAGGCTCTTTTGGATTGTGGTGCGTGTCTGACAGAGCAAAATGGGTTTCCCTATATTTGAAACCCACTGCTGGCAGTTCTTTCTACGTTTAGGGAGCATGGGCCACAGAATTTAAGATATATCCTAATCAAGCTTAAATTAGACAAAGTGGACTTGCAGGAGAAAATAATAACCCTCCACAACAAAGGGTATTTTCATATTCAACTGTAATATTCTCTGGCCACCTATCACACAGTTTCTTTCACTCTTCTTCTTTTCCAAGTTTCACTACATGCCAATCTATTTAATGTGGCTCCAGTCCTTATTAAACTCCTCAAATTTGATAAAATCTAACTTGGCCCTCATTAATTTTTATTACATAATAAAGAGTACCATTGACCCCTAGAATATATATAATATACATGTTATGTAGCTATTATACCCTGCCTCATTCACTTGTAAATCATATCAGTATAGTTTCCTTCTTTACCTTAAC


Gene Sequence:
>Vu_02388(-)
ATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTTAGTAGCTTCCTAGGTTCCTCTCCCGAAGAAGCTTTGCTACAAAACCAAAATGCTAAACCACATCATGGTCAAGTTGAGGATGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGTGGTTCCACCAATGATCATGGATTTGTGAATGCCACAACTCATGCTCCTAGCAACTACTGGATACCAACTCAAGAACAAATCCTTGTTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCTGCAAAACCTTCAATCGCCACAACAATCTTCAGGTACAGTTATCTCTTATCTGTTTCAAATATATGGGGATTTTTGCATGCTACTCTTCATGTGAAACCCTCGACAGTGTTAACACGGTATAGTGCTGTTTCTGAATGAACTATGTATCCTAAGCGTAGCGTGTGAAATGGAATAAACCTTCGCTTTAGTCATATCATAGCACATGGCTTTTTCTAAACCTTCACATAAGGTTTCCAATTTTGGAAAATGTCTCATGTTTTTCTGTTTTCCACTTACTTTTATAACAGTTCTAAGGTTTGAAGGGAATGATGACATGTTTTGGTGAAAGTCGATGCTACTCATACTAGCTTTTAGTTAAAAGTTAAGATCTTTAGTTCTTACTTTTGAAGATTTTATAGGAAACAATAAAAGAGCATAAGAGAAGAATAAAAAAGAAAGGTTTTTATGAATGTTATAATGCAGATGCATATGTGGGGGCACGGGTCACAGTATCGGAGAGGGCCAGACTCGCTGAAGCGAACCCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCGCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCTCTGAAGGACTTTCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCTCCAAACCCTTCACGTGCCGCAAGTGCGCGAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATGAAAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG