Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02345	LG1	31138475	31139968	PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	meristem maintenance, signal transduction
Cellular Component	located in	plasma membrane, plasma membrane
Molecular Function	enables	protein kinase activity, protein kinase activity, protein kinase activity

SNP	Position	Effect	Amino acid change
C/T	31138482	missense_variant	p.Ser496Asn
G/C	31138644	missense_variant	p.Thr442Arg
A/G	31138872	missense_variant	p.Ile366Thr
C/T	31138934	synonymous_variant	p.Leu345Leu
C/G	31138945	missense_variant	p.Ala342Pro
A/G	31138950	missense_variant	p.Ile340Thr
C/T	31138983	missense_variant	p.Arg329Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02345.1

MPSPSSSSSSSAYSLYNSYMVSNFMVSIIVPLFLFSLFVVHVSSCSQIDKLSLLAFSGNISTSPPFPSLNWSDSLDCCAWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGGLQHQLFSLLSHLVVLDLSYNHLSGELPPFGIDNSGKNSSGAAIQELDLSSNFFNGTLPNSLLENLAAAAAGGSLVSLNVSNNSFIGHIPTSLFCINDRNSSSLRFLDYSSNDFDGAIQPGLGACSKLERFRAGFNFLSGPIPSDLFDAVSLTEISLPLNRLIGTIGDGIVGLTNLTVLELYSNHFTGFIPREIGKLSKLERLLLHVNNLTGIMAPSLMNCVNLVVLNLRVNLLEGNIIAFNFSGFLSLTTLDLDNNYFIGGLPPTLYACKSLSAVRFASNQLEGEISPSILELESFSFLSISTNKLRNVTGALTILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPGGFQKLQVLGFGGCNFTGCINISK*

CDS Sequence:
>Vu_02345.1

ATGCCATCACCATCTTCATCTTCCTCTTCCTCTGCTTATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTCTCTCAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGGGATTGATAACAGTGGCAAAAATAGCAGTGGTGCTGCTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAACGGGACACTTCCAAATTCTTTGCTCGAGAACTTGGCAGCTGCTGCAGCTGGAGGAAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCATAGGTCATATTCCCACTTCCCTGTTTTGCATTAATGACCGTAACTCCTCCTCTCTAAGATTCTTGGATTATTCCTCCAATGATTTTGATGGTGCCATTCAGCCTGGACTTGGAGCATGTTCCAAGCTGGAGAGATTTAGAGCAGGCTTCAATTTTCTGTCAGGGCCTATTCCAAGTGATCTTTTTGATGCTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAGACTCATTGGAACAATTGGCGATGGTATAGTTGGCCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTTCATCCCCCGTGAAATTGGTAAACTCTCCAAGTTGGAACGGCTACTCCTTCATGTCAACAATTTGACAGGTATTATGGCCCCGTCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAATCTCTTGGAGGGAAATATCATTGCATTCAATTTCTCAGGATTCCTCAGCCTTACTACACTTGATCTTGACAACAATTATTTTATCGGTGGTTTACCACCAACCCTTTATGCATGCAAATCACTTTCAGCTGTGAGGTTTGCATCTAATCAGCTTGAGGGAGAGATTTCTCCCAGCATACTTGAACTAGAGTCTTTCTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTTACTGGGGCTCTGACAATACTCAGGGGGCTCAAAAACCTCAGTACCCTTATGCTCTCCAAGAATTTTTTCAACGAAATGATACCTCAAGATGTGAACATAATAGAGCCAGGTGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACTGGTTGTATAAATATAAGTAAATAA

Promoter Sequence:
>Vu_02345::LG1:31139968-31141968(-)

TTGAATCGCTTAGATTTGAGGTTTATTTCAGTTTTCTTTTCTCTGGGTGTTGTTACATTGACCTATTTTTGGTCGTTGTTGTTTGGAGGTTTGAAATTGCAATTTTGGAAACCCTAGGTTGGTTTCTTGGAAGTAGAAGAGATAAGCTCGTGCTGCAATTGCCTTCTACACTTGGTAAGTCTGAATTTCTTAGATTGCGATTTGTTTTTATTGGTTGTTATTGAAATGTGATAAAAGGTCATATATACTACTTTAGTATATCTTGAATCAACACTTCCTGTGCTAATTAGTTGTTTTTAGACCATTATTAGTGTAGTGTCTTAAATTGATAGATTTCACTCACTTAGTTTAGTAGTAGTTTAAATTGTTTGGCTTTTCATTCTAAATTTGATTTGAATTTCACCAAAAGAAGTACTTCTTAGTTGTGTTAGATGAACATTAAAAACTGTTTTAGACAACTTAGTGGATTTTTAGATTACCCTTAGATAGATTTTGTTGTAGTTAGTGTGCATGTTAGTTGAACTGACTTTGTGGATGCCCACACTGGCCACCTGCTAGCAGGGTTTAGCTCTGCAACTCCTTTCTCTGCCTCATCAAAAAACATCCTTGTCCTCTTTATCTGTCCCTTCATGAATTTACTAGGTTTATCTATAACTTTACCCAGGAAAATGTCATCATCTAAAAGCCTAGCTTTTGCCAATTCATCTTGTCCCTCCTCCTAGTTTACTTCCCCTTTGTTGACAATGGCATAGTACCTTATCTGCTACTCTTCTTTCTCTTAATTACGAATAATCTTCTACAGATCAAGCTTTGTTTGTCAAATCTGCTTCTACTTCTTTTACTGCATTATTTGTTTAGGTGGATGATATTGTTTTAATTAGCAATGATATGGCAGAAATTAATCATCTTAAGCACATCTTAGATACCAAATTTAAAATCAAAGACCTAGGATCTTTAAGATACTTTCTCGGTCTTGAAATTACAAGGTCCAAATCTGGAATTCACATGAATAAGAGAAAATATATTCTTGAACTTCTCGATGACAGTGGTTTGATTGGTTCTAAACCTACTAACACTCCTTCTGATCCTTCTATTAAACTTATGGCAAATCATGGACAACTTTTATCTAATGCTGCTGGTTACTGGCAGTTAGTTGGCAAACTTTTGCACCTCACCATCATCAAGCAAGATATTGATTATGTGTACAACAACTCAGCCAATTTCTATGCAAACCTCTTGATACTTATTACAATGCTGCTCAAAGAATCTTTCATTACCTCAATGGATCCCCTGCTCATGGCTTGTTCTTCTTTGCTTCATCAAACCTTAGACTCTCGGCCTTTGCCAATTCAGATGAGCTTGCTGTTTGGATACTAGAAGGTCTATCATTGGCTTTTGAGTTTTTGTTGACTCTTCATTGATCTCTTGGAAATCAAAGAAGCAGACTACTGTTTCCTTGATGTAAGATACCTTTTTCTCAATTTGAATACAATGAGAATTCTTGCAAAATGTGAGAACTAAGAAAACTGTTGTGTCTGCAACCTCTATATAATATAACAACTAAACAACTATTTTCTACTTTCTTTAAGATGAATAGTAGAACAACAACTATATCAAAAATCTTTCTTTTCTTTTCTTGCTTAATCCACAGTTTTTCAAAATAAACATAAACACCAGATGAATTATATTTACTATGAACTGCAATGAGTTGTTACAGTGGTAATATAATTAAAATCTAAATATTATCTATGTGTATGTATATCTAAATCCCCAGTTGTCAACGTCACCCTTCCACTTTGTCTCTCTCTCTCTCTCCCACCCTTCATTTTGCTTCCCTTGTCAATGGATGGTCATGGTCTTCCTTGCTCCCATGCCACCCCAACTATCTCTTCTTACATTGGTTCTTCACCCCCTTATGTCCCCCTCCTCCTCTTCTTTCTCATTTCCACTCTCTCATGACCAACCATCACTTCAAACACTCCATTCTCTCAATTTTTCTC

Gene Sequence:

>Vu_02345(-)