Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02337 LG1 30940367 30941894 PREDICTED: transcription factor bHLH96-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein dimerization activity
SNP Position Effect Amino acid change
A/G 30940483 synonymous_variant p.Leu39Leu
G/T 30940527 missense_variant p.Trp54Leu
T/A 30940532 missense_variant p.Ser56Thr
C/A 30940542 missense_variant p.Pro59His
T/A 30940544 missense_variant p.Ser60Thr
G/T 30940552 missense_variant p.Leu62Phe
C/T 30940561 synonymous_variant p.Ile65Ile
A/G 30940569 missense_variant p.Gln68Arg
C/T 30940578 missense_variant p.Ser71Leu
A/T 30940581 missense_variant p.His72Leu
C/A 30940597 synonymous_variant p.Pro77Pro
T/C 30940660 synonymous_variant p.Thr98Thr
A/G 30940911 intron_variant
A/T 30940916 intron_variant
A/T 30940921 intron_variant
T/C 30941303 synonymous_variant p.Gly252Gly
C/T 30941339 synonymous_variant p.Leu264Leu
A/G 30941504 intron_variant
C/T 30941643 intron_variant
G/T 30941756 intron_variant
T/A 30941772 intron_variant
G/A 30941846 synonymous_variant p.Ala303Ala
T/C 30941852 synonymous_variant p.His305His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02337.1
MALEAVVFPQDPFTYPCNKDYFYSLLHNNLQEAENKAFLGIITNNIDHTLHANWDSSSPSALQNIKDQWDSHSSPEPCTVDQSLPAAFPPPPPPSEPTPGRRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQQRTKENGGGFSDSSSPFAEFFMFPQYSTRATQNGRGYPSTCEARSHSWAVADIEVTLVDGHANIKILSKKQAGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTSVSVKVEEGCQMNTVEEIAGAVHELSRRIQEEGVLR*


CDS Sequence:
>Vu_02337.1
ATGGCCCTAGAGGCCGTGGTTTTCCCGCAAGATCCATTCACTTACCCTTGCAACAAAGACTACTTCTACTCGCTGTTGCACAACAATCTTCAAGAAGCAGAAAACAAAGCCTTTCTAGGCATCATCACCAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCCGCTTTGCAAAATATCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCCTTTCCTCCTCCTCCTCCTCCCTCCGAACCCACTCCCGGCCGCCGCAAACGCCGCCGCACCAAGAGCACCAAGAACAAGGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGAAAACAGATGAACGAGTACCTCGCCGTTCTAAGATCCCTGATGCCACCCTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGAGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAGAACGAAGGAAAATGGCGGTGGCTTCTCTGACTCGTCATCACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTATTCGACACGTGCGACACAGAACGGCAGAGGGTACCCTAGCACGTGCGAAGCACGGAGCCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTTGTGGATGGCCATGCCAACATAAAGATACTCTCGAAGAAACAAGCGGGTTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTCGCCTTCACCATTCTCCACCTTAACGTTACCACTGTCGACGATATGGTCCTCACCTCGGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGATGAACACAGTGGAAGAAATTGCAGGTGCGGTGCATGAATTATCCCGCAGGATTCAGGAGGAAGGCGTTTTGAGGTGA


Promoter Sequence:
>Vu_02337::LG1:30938367-30940367(+)
ACAGTAAATTGCTCGGTTAGTAAATTTAATAAGTTAAAATACTCAAATTTATAATATACTTTAATTTAATCATTATTTTTAATTGATATATTTGAACCTTGTCATAGTATTAATTTGATTAAATGATAGTTAATTCGATGACATATAAATAGTATATTTTTTATATTAAGAAATTGATTAAGCAATGGAGTAATGTGTTGGAAGTTTTACATTTACTAAAAATAAAATAAAATTATAATATATAAGTGAAGTGCAAACCTCATCTTACAATTTAATTTGTAGAATTGAATTAGACTTAAATCTATACAAGGAGAATGCATTAAAAAAAAGGAGAGGTGAACGAGATCACCGTAGTGACCTAACCCTGTTGACGAAATATGCTTCTGATACAGTTTATCTTGTATAAAGTTTTTGATATGCCTTTGTCTCCTTACCGACCAGCCGTTTGTTTCTCACCTACATTATGTGCACCCACAATCACATTATTTTCTCATGTATATCATTTCTAATTCTTCTTATTAAACTTTGTTATGATAGATTTTCTGGATAAGATCGATTTATTCTGCAACACACAACATTCAATAATTATATTTTCATCACATTAATTTTTTAGTTTCAATTCTTTTATTCCTTCAAGAAAGATACATATTGTGCATATAATGTTCTGTATCTCAAAAAGGAAAGGTGATAACGAAGGTAGCATTTCACAAATTAACCTTGTAATATATTTAGCTCTTCTTTTCCCTCTTTGGTTTTTACAAATTGTTTTCAGCCTTTAAATGGTGTTACTCAAGTTATGTGAAAATTTATAATAGAACATTTTGTTCTATTGTCTAACTTGCCGTCGAAAACTTTGATTACAAAAACTCTATTTTTTTTTTCTTTTCATTTAGACTAATGTAAGTTGGTTAAATTTCTCTCATAACTATTAAATTTAGAGTAGTTATCAATTCGACCAAGATATCGAGTTAAAGTGACCATACAGGTAATAGATATTTATCCACTAATAATATTTATTGTATTTATAGAAGGTATGAGATGAACTAGATTCTCGTCAATTGGGCAAAACATTTTACATCCAATCCAAAATATTATTGAATCTTTCGAGAAAGATGTATTAGGAAAATGTAATCTCAACTAGACATACAAGTCCAATTATATAAAGAATTAATATTAATTTTAATTTAATTATACAGTATCCAACTTCCTTATAATCTTATATTTGATTTCTGAATCATAAATAACTTCCACTCTTAAATAAATCATTTAGTCTCAATATTTTACAAAATGTGTAATTTTGATCCTATTAAATTTTAATTATAAATTCAGTCTTTTAGTTTAGTAAAATTTATGCAGTCTTCGTAACTTGTGTTGGGCCAAAGCGAACCATTATATGAAGATTGACTGTGAAACCCAACATGGAAGAAATGAACAATGAGAGAGAGAGAGAGTACAATAAATAATATGATGGAGAAAAGATAACAAAAATCATATTAGAATAAAGATTATATGCATTTGAAAATCCAATTGAATCACAAGATGGTTTAATTTTACAAATTATTTTTTTAATTAGATAACAGGTGTGTATTGTTATTATTAGTCCATAATATTGAGGTTGTGAGGCATGAGAAGTGGTTGTGTTGGGAAAGTCATGGGTCTATCGGTTTGCTTGGTGCTGCTATTATAAATAGGAGATATTAAGAAATTGGGAAGAGAATCTTTCTGTGTGTTTTCCAGTGGTTAAGTTGGTGCGATGAAGGAAGCGGTGTAGGACGAAAAATCTCACGTGCATAGGTCTGTAGCTTTTTGTTTGTGTGGACTATCAATCCACTTTTAAGATTTCAACCCAAAAGGGAAATTCTTCTTCTTAAGCTCATCATCATAAAAAGGTTACTTTGTTTCCACCATTACCACTACCCCTGCTTTAGCCTTTGCTAAAACCATCATCCAATCATTCTCTCTCTCTTTACAACCACACTTTCCCACTTTAACAACAACAA


Gene Sequence:
>Vu_02337(+)
ATGGCCCTAGAGGCCGTGGTTTTCCCGCAAGATCCATTCACTTACCCTTGCAACAAAGACTACTTCTACTCGCTGTTGCACAACAATCTTCAAGAAGCAGAAAACAAAGCCTTTCTAGGCATCATCACCAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCCGCTTTGCAAAATATCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCCTTTCCTCCTCCTCCTCCTCCCTCCGAACCCACTCCCGGCCGCCGCAAACGCCGCCGCACCAAGAGCACCAAGAACAAGGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGAAAACAGATGAACGAGTACCTCGCCGTTCTAAGATCCCTGATGCCACCCTCTTATGTCCAAAGGGTTAGTCTAAATAAATTCCACTTCTTTCATCTTTTCGAATTACAAATCTAAATTGTAAATTTTGATTGAGCAGTCTCAGAGACGTTGGACACGAGTACACGTGTTTGGTTTGTTTTACAGTTTGTTGTTTTTTTAAACCTTAAATTAACCCGAGCTAATTTTCGGAAATGTTACATTACAGGGTGATCAAGCATCTATTATTGGTGGAGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAGAACGAAGGAAAATGGCGGTGGCTTCTCTGACTCGTCATCACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTATTCGACACGTGCGACACAGAACGGCAGAGGGTACCCTAGCACGTGCGAAGCACGGAGCCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTTGTGGATGGCCATGCCAACATAAAGATACTCTCGAAGAAACAAGCGGGTTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTCGCCTTCACCATTCTCCACCTTAACGTTACCACTGTCGACGATATGGTCCTCACCTCGGTTAGTGTTAAGGTTGGTTTTTTTCTTTCTTTCTGCTACCTACCTATCTAGATTTGCAGTTTCTTTTTTTCTCTTTCTTTTCCAATTTTGATGCAAAACGTACACTCATTCCTTTTTCCAGCACCCCATTTTTATGTTTGTCATTTTCTCTTCTTGAAAATTTCTATGATACCTTGATAAATTCAAAGAGCTTCGGTACAACTACCAATTTCAGGAATGGTGACACCGGTTTCTGTTAAATGAATTCAAAGTCGTGTCGTCTGTTTTTCGTTAAACAGGACATTGATCTAAAAACTAAAGAACTGTTAGACAAGGGAATGTTAGCATTTTTTTTGTCTGTTTTTTTTTAATGAATAGAAGTTGTATTTTTCTGATTTGTTGTGTTATTTAATGGTGGAACAGGTAGAGGAAGGGTGTCAGATGAACACAGTGGAAGAAATTGCAGGTGCGGTGCATGAATTATCCCGCAGGATTCAGGAGGAAGGCGTTTTGAGGTGA