Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02333 LG1 30855320 30857659 PREDICTED: receptor-like protein kinase 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   maintenance of root meristem identity, protein phosphorylation, regulation of root meristem growth, regulation of root development, regulation of root development, protein phosphorylation, protein phosphorylation, root meristem growth, regulation of root meristem growth, root meristem growth, root meristem growth, maintenance of root meristem identity, regulation of root meristem growth
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein binding, peptide receptor activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, peptide binding, peptide binding, peptide binding, peptide binding, peptide binding, protein serine/threonine kinase activity, protein binding, peptide receptor activity, protein binding, protein binding, peptide binding
SNP Position Effect Amino acid change
G/T 30855360 synonymous_variant p.Ala256Ala
C/*,T 30855389 missense_variant p.Gly247Ser
A/G,* 30855402 synonymous_variant p.Gly242Gly
C/T,* 30855411 synonymous_variant p.Arg239Arg
T/A 30855496 intron_variant
G/A 30855502 intron_variant
A/T 30855518 intron_variant
G/A 30855521 intron_variant
C/T 30855530 intron_variant
C/T 30855577 intron_variant
C/T 30855580 intron_variant
G/A 30855581 intron_variant
A/C 30855641 intron_variant
C/T 30855644 intron_variant
A/T 30855645 intron_variant
A/C 30855649 intron_variant
C/T 30855740 missense_variant p.Arg208His
C/T 30855782 missense_variant p.Arg194Lys
A/T 30855851 missense_variant p.Ile171Asn
A/G 30855868 synonymous_variant p.Asp165Asp
C/T 30855873 missense_variant p.Val164Ile
C/T 30855943 stop_gained&splice_region_variant p.Trp140*
A/G 30855999 intron_variant
C/T 30856010 intron_variant
G/A 30856015 intron_variant
G/A 30856020 intron_variant
C/A 30856022 intron_variant
C/T 30856028 intron_variant
T/C 30856348 synonymous_variant p.Arg115Arg
C/T 30856349 missense_variant p.Arg115Lys
C/A 30856399 stop_lost p.Ter98Tyrext*?
T/C 30856453 synonymous_variant p.Ser80Ser
C/A 30856476 intron_variant
G/A 30856525 intron_variant
G/T 30856550 intron_variant
G/T 30856570 intron_variant
T/A 30856584 intron_variant
G/A 30856585 intron_variant
T/A 30856592 intron_variant
C/T 30856715 intron_variant
T/A 30856740 synonymous_variant p.Gly74Gly
C/T 30856792 missense_variant p.Gly57Asp
G/A 30856807 missense_variant p.Thr52Ile
A/C 30856889 intron_variant
G/A 30856910 intron_variant
A/G 30856945 intron_variant
C/T 30856992 intron_variant
T/A 30857036 intron_variant
G/A 30857052 intron_variant
C/T 30857076 intron_variant
C/A 30857224 intron_variant
T/C 30857225 intron_variant
G/A 30857255 intron_variant
G/A 30857266 intron_variant
C/T 30857285 intron_variant
A/T 30857297 intron_variant
C/T 30857317 intron_variant
G/C 30857319 intron_variant
G/C 30857341 intron_variant
G/T 30857367 intron_variant
T/C 30857398 intron_variant
T/A 30857428 intron_variant
G/A 30857497 intron_variant
C/T 30857509 intron_variant
G/A 30857574 missense_variant p.Ser29Leu
C/T 30857584 missense_variant p.Val26Ile
A/G 30857586 missense_variant p.Ile25Thr
C/G 30857594 missense_variant p.Glu22Asp
T/C 30857599 missense_variant p.Arg21Gly
G/A 30857601 missense_variant p.Ala20Val
C/T 30857614 missense_variant p.Ala16Thr
C/A 30857617 missense_variant p.Ala15Ser
C/T 30857644 missense_variant p.Ala6Thr
G/A 30857645 synonymous_variant p.Ala5Ala
C/A 30857657 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02333.1
MLMSAASGSCFGFQAAVTVARELLIVAASGFSRVLHLVSVEFCIRELKNLKTLSVYTAHLSGHIPPEIHNCSTLEDLFLSFSKQNNGKHSGEFGHLQGLDILLNLSWNSLSDPIPQTFSNLSKLSILDLSHNKLTGTLRVLASAEATHSPLGEKRATVAGSGVFSVDRDVKGILDAHDDHRSGVGVDDGVGLGVARDQNPATALRRSESREIEQRLNLGFMEFGIFLFLGDGKVVDGKVADGKVVDGKVADDKVARVSPNGGGGRRGRRSL*


CDS Sequence:
>Vu_02333.1
ATGCTCATGAGCGCCGCTTCGGGTAGCTGCTTCGGGTTTCAGGCAGCTGTGACCGTCGCTAGAGAGCTTTTGATCGTAGCTGCTTCGGGTTTCAGTAGAGTTTTGCATTTGGTTTCAGTAGAGTTTTGCATCAGAGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCACCAGAGATTCATAACTGCTCAACCTTGGAGGATTTGTTTCTATCTTTCAGCAAACAGAATAACGGGAAGCATTCCGGAGAATTTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGACCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCAGGGTATTGGCGTCGGCGGAGGCGACCCACTCGCCGTTGGGGGAGAAACGTGCGACGGTGGCCGGATCTGGCGTGTTCTCCGTAGATAGAGACGTGAAGGGGATTCTCGACGCTCACGATGACCACCGATCGGGCGTTGGTGTAGACGATGGAGTTGGACTTGGCGTTGCCAGAGATCAGAATCCCGCGACCGCACTCCGAAGATCAGAATCTCGTGAGATTGAACAACGGCTCAATTTAGGGTTCATGGAATTTGGGATTTTTTTATTTCTGGGTGATGGCAAGGTGGTTGACGGCAAGGTGGCTGACGGCAAGGTGGTTGACGGCAAGGTGGCTGACGACAAGGTGGCTAGGGTTTCGCCCAATGGTGGTGGAGGTCGCAGGGGAAGAAGATCGCTCTAG


Promoter Sequence:
>Vu_02333::LG1:30857659-30859659(-)
ATGCATGCCTGATAAGTGTTAGACGCTATAGAGTTCATAACATAGCATCTAATTATAAAAGCATATAAAAGAAAGATAGACCGTCTAGGATACATATAACCTCGCTAAACAATATATCCAAAACGCTTTAAAAGTTAATTAAAATAAATAAGCACTAAAAATTGGTACTCATGTCATTCCTAAACGCTTTGATCGTCTAACAATTTAATGCATATACGTATAAGTACTCTTTTGTCTGTTATGTTGTGCTCTTTTTTTCTGTGAAAATTATCAATTTTATCAAAAAGTATGCCAAAAATTAGAAGAAAGTTACGAGATAGGAGAATATTCAAGAAATGTCTCTTACATGCTTTATGTCTGCTCTTTTCGTACACTTAGCACAATTGTTCTGTTAGGACGTAACATAGCTTCTGACTCTACCTTAAAGGCTACATCCCTAAAAGAAAGTCAAAAGCTCTAAGTAACAGATCTGTTTTGAAGAAGTCTATATAAAGGAGTTTGCATGAAGAGAAGAGAAGAAGTTTTTCTATCAAGAATATTTTTACAAGTTTTCAGAACATAACTCTATGAGAGTTATCTTCTGCCTTGTAAGATTTCAAAAACACTTTTTTGTGTTAGATTCAGTAGTGAATTCAAACACTTGTAAAATTTAACTTAGTGGAATTAAATGTTCTAGATAGTTGGTCTAGTGTTGAGCCCCTTTAAAGGTTTGAAGAGAGAACTGGATGTAACTCAGTTTGAGTAAACCAATATAAAATCAAAGTTTGATTTCTTCCTTTGTTTTTAAACAACTTTTCCATTCAACGCTTTCTTTAAACCAAAGTCTTTAACTACTATTTCAGACTGTCTAACCCTCAAAGTAATATTAAACACTATTTGCGAAAAGTTTTTAAAACACTATTCAACCCCGCCCCCCGCCCCGTCCTCCCACTCCCTAGCCCCCGCCCTCTTTCTAGTGTTTTCTTTTGTTTCAATAAATAAAAGGAGGGAGTAGACTACGCTGAGATGTTTACGCCAATCACAAGAATGGAAACTAATCGACTATTGATTACGTTAGCAGCTCAACACATATATGGTCATTACTTCAAATGGACGTGAAGTCAGCATTGTTGAATGAAGTCTTGAAGAAGAAGTTTATATTGAACGATCACTCAGGTATATGAGAAGAGGGGAAGGAAAGAAAGTATTTAGGTTGAAGAAGGCACTATATGGAATGAAACAAACTCTTTGAGCATGGAATAACTGCATTAACACTTACTTCAAGAAGAATAAATATGAAAATTGTCCATATGAACATGCCTTATACATAAAGAAACATGAAGGGAATGTGATGTTCATTTCTCTTTATGTTGATGATTTTATTTTCATGGGAAATTAAGTAGTTCAAAATTGTCATGGAGAAAGAATTTGAAATGACTGACTTTGGACACATGAAGTACTTCCTCAGATTGGAAGTCAAAAACAACTTGAGACAAACATTTTTATGTCTCAAGAGAGGTATGTCGAAGAGATCTTGAACAAGTTCAAGATAACAAGTTGAAACCCGATTTTGACACCAAAGGAACCGGGTGTATAGCTCTCAAAGTTTGATGGTGGAGATGGAGTAGATGACAACAAGTATCAAAGTTTGGTTGGAACTCTTCATTATTTGACAAGTATAAGGTCAAATTTTCTACTAAGCATTGCTCTCTCGCTCTGTCGCTCTCTCGCTGGCTCGCGTTCTCGCTCCGTCGCTCTCTCGGTCTCGCTCTGAAGACTACTGCTCCAAAATCTCCTGTGAGTGCAGTGCCTCTGGAGGGAAGAGCAAGCGGTGGTGGTGCGTCAATGGTGACGGCGGTGATAGTGGTGGTGGTGCGTCAATGGTGGCGGCGGTGATAGTGGTGGTGGTGGTGGTCAGATTAGGGTTTTTCTGATGTTGATGGTGGTGGTGCGAATTAGGGTTTGATGACGGCGGAGGAGAAGGAGAAGCGGCGGAGGCAAATGCGGAGGGCGGAGGAACG


Gene Sequence:
>Vu_02333(-)
ATGCTCATGAGCGCCGCTTCGGGTAGCTGCTTCGGGTTTCAGGCAGCTGTGACCGTCGCTAGAGAGCTTTTGATCGTAGCTGCTTCGGGTTTCAGTAGAGTTTTGCATTTGGTTTCAGTAGAGTTTTGCATCAGTAGAGTTTTGCATTTTGTTGAATTGAATCTGAGAATGATCTTTTGAATCTGAGATTTTGTTTTGATTTTTTTAACTTGCTTCCTTTGTACTAAAAAAATTGTTTGTTTGGTCTGGTTAGCCATTCACACATGATCAAGTTCATTGGAGGTGCTGTTAACTTTGTCAAGGAGACCGACCCCGAGGCACCAAAATTAAAATTATATGACTGGCTAAAGAAGAAGGAAAAATAAATAAAAAAAGGACCCTACTGCCTCGGTTCAGCCTCCAACCGAGGCAGTAGAGGGAGAGGAACAATTTCGAGTCTAATAACCGAGGCCGAATCGTACCATTTTATGTCTCATTTCAAAACCGAGGCATAAAGTCTACCACTTTTTACCTCACCTGAATATGCCTCGGTTCAGGAACCGGTGCCTATCAGCGAAAATAACCACTGCCATTTCCCTTAACTGTACTAGTGTAGGCACTGGTTCTGCAACCGAGACATATACAGGCGAGATAAACAGGGATAAGCTTTTTGCCTCGGTTCTGAACCGAGTCAAAAAGAGATAGGATTTTGCCTCGGTTCACTGGTAACCGAAGTAGTACAAAATTTTTTTATATATTTTTTGGAAGAACGTTTCGCCTCGGTTCCTATTTAACCGAGGCAGTTTCTCCCAAGCAGAAATTCCAACAATCAAGAATTAAGCTATTATAGGAGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCACCAGAGATTCATAACTGCTCAACCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGTTGTGGCAGAACAATTTAACTGGGACCATTCCGGAAAGTCTTGAGCTTCCTTGAGTTATCAAATAATCAACTCAGTGGAGATATTCCCTCTTAGATAGGAAACTGTGCTCATCTAGAATTGCTTGACTTGCACAACAATGTGCTGGAAGGAACCATTCCTTCATCTTTGAAATTCCTAGTTGGTCTCAATGTCTTAGATCTTTCAGCAAACAGAATAACGGGAAGCATTCCGGAGAATTTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGACCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCAGGGTATTGGTTAGTCTTGATAATCTTGTCTCTCTAAATGTCTCCTATAATAGCTTTTCTAGTTCTCTTCCTAATCCAAAGAATGCAAATCAATAGATGTGAAACATTGGAATGAAGGCCAAGAAAATATCATCTTGCATCCACTGACTTCAGCACACCAGAAAGTCAATCTCATTATGGAAAGGAGATTTGCATGAGTTAAAACCATACCTTTGCTTATTCCCGTGGTCCCTGAAGAGTAAAATATAGCAGCAGTGTCTGACTGTGCCACAGGAACTTGCGGTAACTCGATTGAATCATAACAACCTTCTATTAACTCTTCAACTCGGTACCGTAGGCGTCGGCGGAGGCGACCCACTCGCCGTTGGGGGAGAAACGTGCGACGGTGGCCGGATCTGGCGTGTTCTCCGTAGATAGAGACGTGAAGGGGATTCTCGACGCTCACGATGACCACCGATCGGGCGTTGGTGTAGACGATGGAGTTGGACTTGGCGTTGCCAGAGATCAGAATCCCGCGACCGCACTCCGAAGATCAGAATCTCGTGAGATTGAACAACGGCTCAATTTAGGGTTCATGGAATTTGGGATTTTTTTATTTCTGGGTTTGTAGGTGATGAAGATGAATGGTGGTGTTTTCTGCTTGCATCGCTGTGCAAATTTCTTTGATCGAGTTTCGATGTAGATGGAGGTTGCAAGGCTAACGCTGGAGCTTCGTGAAGATGGCCATGGAAGATAGCGCCTGCGCGATTCTGGTGAGGACGCGATTCTGGTGATGTGATTCTGGTGAGGACGCGATTCTAGGTGGCGGACGGCAAGGTGGTTGACGGCAAGGTAGGTGATGGCAAGGTGGTTGACGGCAAGGTGGCTGACGGCAAGGTGGTTGACGGCAAGGTGGCTGACGACAAGGTGGCTAGGGTTTCGCCCAATGGTGGTGGAGGTCGCAGGGGAAGAAGATCGCTCTAG