Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02308	LG1	30460880	30461653	PREDICTED: zinc-finger homeodomain protein 2-like isoform X4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of transcription, DNA-templated, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA binding, protein binding, protein homodimerization activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein homodimerization activity, protein binding

SNP	Position	Effect	Amino acid change
A/G	30461011	synonymous_variant	p.Arg44Arg
G/C	30461116	synonymous_variant	p.Pro79Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02308.1

MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGAEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPGAGGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLGKKP*

CDS Sequence:
>Vu_02308.1

ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTCGCAAGTTACGACTCGCTTGGAAACTCCGCGGCTCGCTCCAAAGTCGGCGCCGAGGGACGAAAGGGCGCGTTCGGCGCCGCCGCGGTACGATACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCACCGCCGCCTCTGCACCACCACCATCAGTTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGGCGCCGGCGGCTACCTTCACCACCACCTCGCCACACCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCAGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGAGGTGGCGGAGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCCGAGACCAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA

Promoter Sequence:
>Vu_02308::LG1:30458880-30460880(+)

TCTTTAAGGTTACTTAATCAACATCGAATCCTACCAAAGCAAAATTTCTTGTACCTGAAGTTTTTGTCGAAAAGCTTGTCATGTACAACGAAACGATTCAGCTGGGATAGGTGGTTAGGGCACCATGTGCTTTGGTTTCAGAGAAAGAAAAATAGTTTGATTGCTATACTTACCAAAAAAGACATGGAGATACTTACCAAATAGGGGATTGTAATTTTTTTATATTTAAATAGTTATTTTATAACACCTACTAATAGTTAAATATAAAGACTATATATATAATCAAGATCCAATCTCTAAAATTCTTTTTTGTTTTACCTTTAGAGATGCTGCAATTATATACAATATATACTATATATATTTCTAATATAAAGATTCAAAGTGTTACATATTAAATCCAAGATAAACAACAACTAATTAATGTTTTGAAATGACATCTATATATGTGACCCTTTGCAAGATCTTCCTTTGTTTTTCTTTCGTTACCAGAGTCAATGGAACACATGTTATTTGAAATTGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGATAAAGTTTTAATCACTTACATTATAACCGTGAGTTTTTGTTTTTGTTTTTTCATATTGAAGCTATGAAGAATTGAAAAGGTGTATTCCAGAAATACCATAGAGTTGAATCAACAAAGCCTACAAGCACCATAAAGTCCATGATCCTCAGCCCCTCTCTAAAAACATGGTTCCTTGATTTGTGCTGGAATAGAATTGTTGTCACCTAGTAGAACCTCATCACTGTAGATAAGAACATTAATGGAGATTGTTGTGGATGGACATGAGCGGAAATTGTGAGAAGAAAAAACCAAATAAGCAGTTAATAAAATGTATGGAGATTTTTTAGAATAATGAAAGAAGCAGTGATTAAGTGGTATATTTATGATTAATTGAGATTGAGAGGGATAAAGAAAAGAAGGAGGTGAAATGAGAGAGAAGAGAAGTGGAGGAGGATAAGGTAATTAAGTTAATGGTAATGGATGAGAATGAGAAAGAGAGAATAATGATAATAAGAGAATTTAGGAGTTAGGAGTGTGAGGGAAGAGTGATGTCATGTCCTGTCGGAGAAGGAGGGCACGTAGGCAGCTCCCATAAATGCAGACAGATTAATTGGTCCGATGTTAAGTCCGTGTCTTAAGTTTTATTTTTATGGTTCCATTTCTGCTCCCAAATTCTTCAACCACATTCACTTCTCCTTCTTCCACTTCCACTCCTCCTTTTCTCCTCCTGCTTTCTCACCAACCATATTCCCTTCTCTCTTCTCTCTTATCTCTTCTCTCTCCACTCAACTAATTACCCTTATCATCCCAAACATCCTACCTACAATAAAACCTTTTCTCTAATCTCTGCATTTTTATTATTATTATTATGCCTTCCACTCTTCTACATTCTTAAATAATGTGGCTTCCTTGCATTTTGCAATATCTTTAATAAAAAAAGACACAAGGTTGGAAAAAGGGTGCAGAAATGGGTTATGGTCAGTTAAAGTAAAAAGTAAATGTCTGAACAAGAATGGTACAGGTGTTAATTATGTAATGGCAAGTATTTGAAACCCTTTTCTGAGTGAAACAGCTCTTTTCTTCAGACCGCTTATTCATGACCACATCCTCTTCGATCTCTTATCTTCAAACAACAATAATAACATTATTTTATTAAATAATTCTTACCATTATTATATATTAAATATATTCATTAATTTAAATCCCATATAAATATATACACAAACACAATCTTACTTAGCTGCTTAGTTTTTATTATTATCTTCAAATCTACCTATACTCTGTCTTGGTGAAACTCAAAACTCCCTTGCCCAAACTCACATGTAGAGTATAGTAGAATAGATCTTCAACTTTCTCCCCCACTTACTTCCACTTCCTCTCGGTTCTAGAAACCCTAACACACACAACTCAATTTCGTTGGTAAAAAAAAAAAATCATCTTTTTAGGGAGAGAAGGTGGAGAGCGATA

Gene Sequence:

>Vu_02308(+)