Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02267	LG1	29066518	29067237	PREDICTED: ethylene-responsive transcription factor TINY-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	sequence-specific DNA binding, DNA-binding transcription factor activity
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/A	29066565	synonymous_variant	p.Ser16Ser
G/A	29066605	missense_variant	p.Glu30Lys
G/T	29066688	missense_variant	p.Trp57Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02267.1

MRVSARNDNSGKESRSTSPLSPSEEAPPSESKPEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAASLPRPVSLAPRDVQAAAAKAAHTDFRPSSTSLSSSTSSLVSTTSSSSSLSSSVSTSDLSAESEELSQIIELPRLETSYELGKEFVFADSQDTWMYQPPIPWLQTTYDASHADDDIVVAETGLVTSFKSFLWDY*

CDS Sequence:
>Vu_02267.1

ATGAGAGTTTCTGCACGCAATGATAATTCTGGGAAGGAGAGCAGGTCGACCTCGCCGTTATCACCATCGGAGGAGGCGCCCCCGTCAGAGTCCAAACCGGAGAAGCGCAACCGGGACTCGAACAAGCACCCGGTGTACCGAGGTGTGCGCATGAGGAACTGGGGAAAATGGGTGTCGGAAATCCGAGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCCACGCCGGAAATGGCGGCGAGGGCGCATGACGTTGCAGCACTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCGCCTCGCTTCCGCGTCCCGTGTCGTTGGCCCCTCGCGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACACAGACTTCCGTCCTTCGTCCACGTCATTATCATCATCAACATCATCGTTGGTGTCAACCACTTCCTCCTCCTCGTCGTTATCCTCGTCGGTTTCAACTTCGGACTTGTCAGCTGAGTCGGAGGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAAGGAGTTTGTGTTCGCAGACTCGCAGGACACGTGGATGTATCAGCCGCCGATACCTTGGTTGCAAACCACGTACGATGCTTCTCATGCCGACGATGATATTGTAGTGGCAGAGACTGGGCTTGTCACTAGCTTTAAGAGTTTTCTGTGGGATTACTGA

Promoter Sequence:
>Vu_02267::LG1:29064518-29066518(+)

CGTTAAAAAAAAATCTATATGTAACTCAAATTTACAAATTCTTAATAAAATTGTATGTAATACTTATATTATTTAGGAATTTAAATATATAGATAAATATAAGTAGGTAGGTACATTAGATGCTATTTGTAAAAAGTTGTAACAAGGAATTATTAAGAAGACAATTCGATCCTTTTTTATTGAGTTTTTCCTTTTCTTCACAGCTAATTTTTAGTTAGTGGAGGCATAAGCTAAGGTTTACCCTCTAGAATAAAACTCAAGGTATTTCATCATTCACTAGGAGACATGGACTGAGATAGAAAACAAAGAGTGCAGAAAGCAAATGCCTCATAGATGATGTATGGGCTTAGTCTATTTATGAGAATTAAATGGCTGTTCACACATGTGCACAACTGAAACCACCTATGGTGTGCCATACGTGTGAGACAAACGTAACACTGGACCCATATGGTGTGATATTGATCTGAATATAATACAACTACGACATTGCGAAGACAATTACTACATGGAAGATTTTGATACAAATAACTAGCTGACTATTCGAGACACTTGAGAGGCTTAAATTGAAGAAAAAACAAACCAAGGGAGTATTGCACCAGCTAGGAATAGAAAATAATATATATTGCGAAAGGGAAGGAATCAAAGAAGGATCCTGAAACCTAAACATTGCTGGCTTTCTTACAATAAAGATTTAAAGGCACTCACATGCCTTGCTTCGCTGAATAATCAATCTCCAGCCCAGAAACAGGATATGATTGGTACCTTGTTAATTTACCGAACTAAACAGGTTGTGTATACCAAATTATTCAGCACAACCGCTGCTGATCAACAAATGAATTATTTCTCACCAGTTCAATTGATCGGCCACAGCCAAATACGAACACACATATGATGATAATGGATTGACAGTCAGTTAGCAAGTTCAATCACTTTCACAGAATTTAGAGCTTTCTCTATATATAAATTCTTGGCGATGACAAAGCCCTGTGGTACCCTCTTAACACGTAATCAAAAGAGTCACAAGGAAGACTTAATGCATCAGGTGCCAATATAAAAAGAAAAGCATTAATGATAGCCTAATTATGCATTAATTAGTGGGATCACGTTGCGTCACCACTTGCACCCATAAATCCACCAACCAACCTTGCTATGTATGATGCATGGAATAAGTTACACACGCGAACACCACCATATGCGTACAAAAGGGTAGATCAGAGTAGGGGTAAGGGCAAATTGGAGATAGTGAAGGGGGTAAGAAAGTGGTGTGCATAATTGGGCTGAAAAGCTGTGTGATATCTTGAAGGAATACACGGATAAGGGATAAATGAACAGTGCAACGTGGGTGAAACCGAGGCAGGTTGAAGATAGATTAGGTTGTAGAAGTGAAGCGCACAGTGCAGAGAGTGCAAAACCAAAAGCAATTGTTCGTGGCACAAAGAAAGGGTGACCCATCGTGTATTTGTATCCACCGGGCCAGGCAGAGAGACCCATTTCTTGTGGACCCTCTGTCAACCTTTATAAGTGTTATATGACTCATTCAGAAGTGACTCTCAAAATTAAACACCATGCCTCATCAATTTTCTCCCTTCCAAACTCAACAGAAGACTTCTCTCACGTCTTGTCTTACCTCAATCTTTTCTTCCCACAAGTAATCTTATTTAATAACCCCCAACACTTCACCTGATAGAAATTCAAACTTTACTTTGCTACATTGTGAGAGATTATAGTTCCAGGTGCTTATCTAAGGTTTAGTTCATTAAGAGATCTTAGACCCATCTACACTTGTTGGTTAACTCAATCTTTCATATCTTACTTTTCTACATATGTAAGGATTTTGAACATAGTTCTAAACTACATCTGCAAGTGTGTGTTTTTTTTGTGTTGAACTTGAATTCAAATTTTTTTTTTTTATTTTCTTTGTAATTGGAACACTGGAAAGGGACAAATCTGGAATCAGCTTAGTTTTTTGACAGTCCAGTACGCGCTAAAACCTCTTACAA

Gene Sequence:

>Vu_02267(+)