Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02201 LG1 27822574 27825168 PREDICTED: pollen receptor-like kinase 5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to lipid, protein phosphorylation, regulation of reproductive process, regulation of anatomical structure morphogenesis, protein phosphorylation, regulation of developmental growth, protein phosphorylation, cell differentiation
Cellular Component   located in   apical part of cell, apical plasma membrane, apical plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, kinase activity, protein serine/threonine kinase activity, protein binding
SNP Position Effect Amino acid change
T/G 27822726 missense_variant p.Asp51Glu
G/T 27823001 missense_variant p.Arg143Met
A/T 27823018 missense_variant p.Asn149Tyr
T/C 27823086 synonymous_variant p.Arg171Arg
A/G 27823089 synonymous_variant p.Gly172Gly
A/T 27823110 synonymous_variant p.Ile179Ile
A/G 27823115 missense_variant p.Asp181Gly
G/A 27823125 synonymous_variant p.Gln184Gln
A/G 27823127 missense_variant p.Gln185Arg
C/T 27823147 synonymous_variant p.Leu192Leu
T/A 27823150 missense_variant p.Ser193Thr
G/A 27823204 missense_variant p.Gly211Ser
C/T 27823253 intron_variant
C/T 27823284 intron_variant
A/G 27823293 intron_variant
A/T 27823298 intron_variant
T/A 27823304 intron_variant
A/T 27823337 intron_variant
A/T 27823354 intron_variant
A/T 27823380 intron_variant
T/A 27823471 intron_variant
C/A 27823518 intron_variant
A/G 27823521 intron_variant
C/G 27823536 intron_variant
C/T 27823564 intron_variant
G/A 27823607 intron_variant
C/T 27823621 intron_variant
C/T 27823747 intron_variant
C/G 27823755 intron_variant
A/G 27823758 intron_variant
T/A 27823759 intron_variant
T/A 27823768 intron_variant
A/C 27823786 splice_region_variant&intron_variant
C/T 27823936 synonymous_variant p.Cys262Cys
A/G 27823978 synonymous_variant p.Gln276Gln
A/G 27824029 synonymous_variant p.Ala293Ala
A/G 27824042 missense_variant p.Lys298Glu
A/G 27824251 synonymous_variant p.Glu367Glu
A/T 27824333 downstream_gene_variant
C/T 27824378 downstream_gene_variant
C/T 27824465 downstream_gene_variant
A/T 27824474 downstream_gene_variant
T/A 27824520 missense_variant p.Leu383Met
G/A 27824595 missense_variant p.Asp408Asn
C/T 27824598 missense_variant p.Arg409Cys
T/A 27824640 missense_variant p.Ser423Thr
C/T 27824641 missense_variant p.Ser423Leu
C/T 27824645 synonymous_variant p.Phe424Phe
A/G 27824741 synonymous_variant p.Glu456Glu
T/A 27824751 stop_lost p.Ter460Lysext*?
C/A 27824833 missense_variant p.Ser487Tyr
T/A 27824834 synonymous_variant p.Ser487Ser
C/T 27824841 missense_variant p.Arg490Trp
G/A 27824934 missense_variant p.Gly521Arg
G/T 27825006 stop_gained p.Gly545*
T/G 27825009 stop_lost p.Ter546Gluext*?
A/G 27825057 missense_variant p.Arg562Gly
C/T 27825114 stop_gained p.Gln581*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02201.1
MVQKRPYYCLVMLFVLGISFEPSLGDTDVQILMRFKGSLSNGKALNDWGSDSSLCSWTGLLCRKNQTFYGLRLEHMELGGKIDIETLVELPTLVSFSVINNTFEGPMPEFKKLVSLRALFLSNNKFSGDIPDDAFEGMRKLKRVFLAENGFTGPIPKSLANLPRLLDLDLRGNGFGGNIPDFQQQDFRVFNLSNNQLEGQIPESLSNKFPGSFAGNEGLCGKPLGSCKIGGNESRSLEPNLDKPQGKNHRILITVIIVVAVVAFSSIVALLFIQKHKRKRFKPRTLPTQGNFQQSVGLKESHSIDMTVDLKDGDGELNFVREDRGGFDLHELLSASAAVLGSGSFGSTYKAMILNGPTVVVKRFRHMNNVGKQEFSRNGSVLTWSSRLKIIKGVARGLAYLYENFPGKIVPHGHLKSSNVVLDHSFEPKLTEYGLVEVMNKSHAQKFMAAYKAPETNKFGRPNVKSDVWCLGILILEVLTGKFPANYLRHGKGGNNSDLATWVDSVVREEWTGEVFDKDILGTRNGESEMLKLLRIGMFCCKWSVDNRWDWNEAVAKIEEVKENDGEDDSSSCYYVSEEDFNSRTATEDEFSFSVTNG*


CDS Sequence:
>Vu_02201.1
ATGGTTCAGAAAAGACCGTATTATTGCCTTGTTATGCTCTTTGTGTTGGGCATTAGTTTTGAGCCATCGTTGGGAGACACAGATGTTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTCAAATGGGAAAGCCTTAAACGACTGGGGGAGCGATTCCAGTTTATGTAGCTGGACTGGCTTGTTATGCCGCAAAAACCAAACATTTTATGGCTTGAGACTAGAACATATGGAACTGGGTGGGAAGATTGATATAGAAACCTTGGTTGAATTGCCAACTTTGGTAAGCTTTAGTGTCATTAACAATACATTTGAGGGTCCGATGCCGGAGTTCAAAAAACTTGTGAGTTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCCGGTGACATTCCAGATGATGCTTTTGAAGGCATGAGAAAACTGAAGAGGGTATTCTTGGCAGAAAATGGTTTCACTGGTCCTATTCCAAAGTCACTTGCTAACTTGCCAAGACTCTTGGATTTGGACTTACGTGGAAATGGTTTTGGAGGAAACATACCAGATTTTCAACAGCAGGATTTTAGAGTATTTAATCTGTCAAATAACCAATTGGAGGGTCAAATACCAGAAAGCTTAAGCAACAAGTTTCCAGGTTCATTTGCTGGCAACGAAGGCCTGTGTGGAAAACCTTTAGGTTCCTGCAAGATTGGCGGCAACGAATCTAGATCACTGGAACCAAACCTTGATAAACCTCAGGGAAAAAACCACAGAATCCTTATAACTGTCATTATAGTCGTAGCAGTTGTTGCTTTTTCTTCAATAGTTGCACTTCTATTTATCCAGAAACACAAGAGAAAAAGGTTTAAACCCAGAACATTACCGACGCAGGGTAATTTCCAGCAAAGTGTAGGCTTAAAGGAGTCACACTCCATTGATATGACAGTTGATTTGAAAGATGGAGATGGCGAATTGAACTTTGTTAGGGAAGACAGAGGAGGATTTGATTTGCATGAGCTGCTTAGTGCCTCAGCAGCCGTTCTTGGTAGTGGAAGTTTCGGGTCCACTTACAAGGCTATGATTCTGAATGGACCAACAGTGGTTGTGAAGAGGTTTAGGCACATGAACAATGTTGGGAAACAGGAGTTTAGCAGAAATGGCTCTGTTCTTACTTGGTCCAGCCGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTGTATGAAAACTTTCCAGGAAAGATCGTACCTCATGGTCATCTGAAATCCTCTAATGTGGTGCTGGATCATTCATTTGAGCCAAAGTTGACTGAGTATGGCCTTGTGGAAGTGATGAATAAGAGCCATGCTCAGAAGTTCATGGCAGCCTACAAGGCCCCAGAGACGAACAAATTTGGTAGGCCAAATGTGAAAAGTGATGTGTGGTGTCTGGGGATCCTGATTTTGGAGGTGCTGACAGGGAAGTTCCCAGCAAATTATCTGAGACACGGGAAGGGTGGGAATAATTCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGGGAAGAATGGACTGGTGAGGTGTTTGATAAGGACATCTTGGGGACTAGGAATGGGGAGAGTGAGATGCTGAAGCTGCTCAGGATTGGAATGTTTTGTTGCAAATGGAGTGTGGATAATAGGTGGGATTGGAATGAGGCAGTGGCAAAGATTGAGGAGGTGAAAGAGAATGATGGTGAGGATGATTCTTCTTCTTGTTATTATGTCAGTGAAGAGGATTTCAATTCAAGGACTGCGACTGAAGATGAGTTCTCTTTCTCTGTCACTAATGGATGA


Promoter Sequence:
>Vu_02201::LG1:27820574-27822574(+)
ACCTATACAAAAAGCCTTGATGAATGTTGAACTAGGAGGAGAACCTAGAGAAGATGAAAAAATTAAACAAATTTTAATGGAACTTGATAAGAAGGATGACTGTTGTAGTTGACACGATCAAATTAATACTACTAAACTATAGCAACGACATTATTAGTTCAACCCTAAGTTGTCTCCCAATGAACACATAATTGATTCTTAACAAATTAGTTCTTATAAAAATTATATAAAAGTGTTAGTAAAATAAAAATAATAAATAAGATAAAGATAAATATACGATTAAAGAATAACATAACAAAATATAGAAAAAAAAAATAAATTTATCAAGGATTTAAAAAGACTGAAATAATGATAAAGAAAATAGGATGATTTCATTATTTTTTTTAAATAAGATTAAATATTGGTTATATAAAGATTATTGTTCAATTAATTATAGTTTTAGAATTTCAAATTAATTAATGTAAATTCTCAATTAATTTGTTCCCATAAATAATAGAGACATATAACATAAACTAGACGAGCTCACCTTCCAATATCCGAAAAGTTTTTCGAAAACCAGATACGAAAATGCAGCACCCATTTCAAGATTTCACAACTTATATAAAGTCTTATAACCTTTAAACTGCCATGTACCATCCAAGATCATCAATCATGCTCGAACCATTCAACACTATTGGTCTCACATCCTTAATAAACCAAAATTTTATTTCTAATAAAATAGTAAACTAATTCTATTTTGACCACAAACACTATATTGCACAACAACTAAACACTCTTTTTGGTATTGACATGCACAATAGCATACCCAACAATGCAGCAAGGTAATCAACCACACTAGATCCAAAACTAATAAAACAGTCAACCAATAAACATCCATCCATCCAAACTTTCCTAGTAAAAGATATACTGCATACGTAGCGAATTGGAAAATAAAGACTAGGAAACATGACACCAACTTGACTGCTGCTTTCGAAATGCCCAAACTTATATTAACTTCTAAAATCTAAGGTTAACATCAACTTGATTATTTCCATTAATTAAATTAGGCCTCCTATGCTAGTTCAGGTGCAATGTATTTAAGGTCTAAGCATAAAAAAACCACTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACCGCTCATGCTAAAAATAGTAATTAAACAAATAAATAAATTTATGCACTTATCTAAATTTGGACACATGACCTCCAACTTATAACAAAGAGTTTTCACCAGCTGAGTTATGCAACCCTTGATAAACATCCAATCTCTTATTTCTTTATAGATAATCTTCTTGGATCTTACACTTTTATCAATCGATTTTTGTTCTTCGGTAATTTGTCAAAAATCCACTATTACTGACAAATTTTTGCAGTTTCCAATAGATATTAATCGTCGATAACTTTAGTTTTTATAATATTATATTATTATAAATTTAAATAATTATTGATTGAATTTCAAAAATTTGTACTTTTCTATCCCTAGCTCTGAAAGTTCTTAGTTGTTACCAATTTATGTGGGAAACAAATGCATATACATAATTCAGAACAGAAAACACATGGCACATAGTAGCTACGACCAACGTAACATCAGCGTATAACAAACCACACACAAGACAAAAACAAGTTATAGAAAATTGTTACGAATTAAGTAAAGCCAATGCAGTAGAAGACACCTTGTTCCTCAATAACAAGAGAAACCAGCTTTCAATTAAGCACCTTAATATAATATATGCTATTAAACAAAAGAACCATCGAAAACAAGGTCCGAATCATTACTCGTATATGGCCGGCCCAATGATTATTCTTTGCATGTAGGACTTTGTCAATGCCACGACGTTGATTCTTAATATGGGCACTTTCTCTCAAATTCTGAGTGCTTCTCTTGTTATTTGTCTCGTTCCCTCTATTTCCTTTCTGTTCAACAAATAACCCTCTTTGCTTCTTGTTTGATAAACTAAATTA


Gene Sequence:
>Vu_02201(+)
ATGGTTCAGAAAAGACCGTATTATTGCCTTGTTATGCTCTTTGTGTTGGGCATTAGTTTTGAGCCATCGTTGGGAGACACAGATGTTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTCAAATGGGAAAGCCTTAAACGACTGGGGGAGCGATTCCAGTTTATGTAGCTGGACTGGCTTGTTATGCCGCAAAAACCAAACATTTTATGGCTTGAGACTAGAACATATGGAACTGGGTGGGAAGATTGATATAGAAACCTTGGTTGAATTGCCAACTTTGGTAAGCTTTAGTGTCATTAACAATACATTTGAGGGTCCGATGCCGGAGTTCAAAAAACTTGTGAGTTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCCGGTGACATTCCAGATGATGCTTTTGAAGGCATGAGAAAACTGAAGAGGGTATTCTTGGCAGAAAATGGTTTCACTGGTCCTATTCCAAAGTCACTTGCTAACTTGCCAAGACTCTTGGATTTGGACTTACGTGGAAATGGTTTTGGAGGAAACATACCAGATTTTCAACAGCAGGATTTTAGAGTATTTAATCTGTCAAATAACCAATTGGAGGGTCAAATACCAGAAAGCTTAAGCAACAAGTTTCCAGGTTCATTTGCTGGTAAATTAATAGTATTTCTGTTTTTTCACCAACAGGCACAATTTTTAATTCGTTTGTTGTTTCTCACCACAGATTTAATTTATTTTATTTGTTATGAAAATTTATGTTTACTGATATCTTATTTCAACCTCACTTCTAGGCGAAACTAAAACCGTTTAATTTCATTCGTACCACAGCTTGCTACAAATATCATTGATAGACTTCTATGTATAGTACATTTGAAACTCTGTCATCATTAACCAGATTCATTGTGTTTGTTGATACTGTGAATTAAATGTGATCAAAATGATACATATATAGTCACATTTATTAGAAACAACGTCAATTTACAAAATATATAAACACTACAAATCTTATCTTACAAATTAATTTTATAAGATATAATAATTAGGTTTAAAATTCACCTTTTAATATCTATTATATATATATATATATATATATATATATATATATATATATTATAATTTAGTCATCTCCACCAAAGTGGTATTTATACTGCATATCCACGATTTATCTGTAATTTTTTTTTGCTATGTTACATATATGTTCAATTTACATGTTTTTGTGCAACGCAGGCAACGAAGGCCTGTGTGGAAAACCTTTAGGTTCCTGCAAGATTGGCGGCAACGAATCTAGATCACTGGAACCAAACCTTGATAAACCTCAGGGAAAAAACCACAGAATCCTTATAACTGTCATTATAGTCGTAGCAGTTGTTGCTTTTTCTTCAATAGTTGCACTTCTATTTATCCAGAAACACAAGAGAAAAAGGTTTAAACCCAGAACATTACCGACGCAGGGTAATTTCCAGCAAAGTGTAGGCTTAAAGGAGTCACACTCCATTGATATGACAGTTGATTTGAAAGATGGAGATGGCGAATTGAACTTTGTTAGGGAAGACAGAGGAGGATTTGATTTGCATGAGCTGCTTAGTGCCTCAGCAGCCGTTCTTGGTAGTGGAAGTTTCGGGTCCACTTACAAGGCTATGATTCTGAATGGACCAACAGTGGTTGTGAAGAGGTTTAGGCACATGAACAATGTTGGGAAACAGGAGTTTAGTGAACACATGCAAAGGCTTGGAACTTTAACACACCCTAATCTTCTCCCTCTTGCAGCATTCTACTACAGAAAAGAAGATAAGTTCTTGGTTTATGACTTCGCCGAAAATGGTAGCTTGGCCAGTCATCTACACGGTATATGACGATAACTTCTAAGATTTATTACAGCTTTAGATTTAAAGAAAACTGACCATCATGAATACCATTTTTTTGCATTTTGCAGGCAGAAATGGCTCTGTTCTTACTTGGTCCAGCCGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTGTATGAAAACTTTCCAGGAAAGATCGTACCTCATGGTCATCTGAAATCCTCTAATGTGGTGCTGGATCATTCATTTGAGCCAAAGTTGACTGAGTATGGCCTTGTGGAAGTGATGAATAAGAGCCATGCTCAGAAGTTCATGGCAGCCTACAAGGCCCCAGAGACGAACAAATTTGGTAGGCCAAATGTGAAAAGTGATGTGTGGTGTCTGGGGATCCTGATTTTGGAGGTGCTGACAGGGAAGTTCCCAGCAAATTATCTGAGACACGGGAAGGGTGGGAATAATTCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGGGAAGAATGGACTGGTGAGGTGTTTGATAAGGACATCTTGGGGACTAGGAATGGGGAGAGTGAGATGCTGAAGCTGCTCAGGATTGGAATGTTTTGTTGCAAATGGAGTGTGGATAATAGGTGGGATTGGAATGAGGCAGTGGCAAAGATTGAGGAGGTGAAAGAGAATGATGGTGAGGATGATTCTTCTTCTTGTTATTATGTCAGTGAAGAGGATTTCAATTCAAGGACTGCGACTGAAGATGAGTTCTCTTTCTCTGTCACTAATGGATGA