Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02177	LG1	27374542	27376149	PREDICTED: GATA transcription factor 12-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of transcription, DNA-templated, circadian rhythm, response to light stimulus, cell differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding

SNP	Position	Effect	Amino acid change
G/T	27374969	intron_variant
A/G	27375062	intron_variant
G/T	27375197	intron_variant
A/T	27375300	intron_variant
A/C	27375339	intron_variant
T/C	27375552	synonymous_variant	p.Asn150Asn
G/A	27375709	missense_variant	p.Val203Ile
C/A	27375719	missense_variant	p.Pro206His
G/A	27375922	missense_variant	p.Glu274Lys
C/T	27376018	missense_variant	p.Arg306Trp
A/T	27376064	missense_variant	p.His321Leu
C/T	27376119	synonymous_variant	p.His339His
T/A	27376142	missense_variant	p.Leu347His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02177.1

MESPNSSAIFPQFTLDTTKNNNPDHFIVEDLLDFSNDDAVNADTIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPNTIPDIGSRSLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVPKARGFHSEPTRNGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSDTEVVAPVSTHSGTKKPAKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHVGPDYRQLI*

CDS Sequence:
>Vu_02177.1

Promoter Sequence:
>Vu_02177::LG1:27372542-27374542(+)

TCATGAAGACCGGTCGAGATTCCTTTGGTGAAAAACCACGGTCACCGATCTTCGAGAAGGCTGGCTGGGATTTCTTTAGTGAAGAGCCATAGTCACCGACCTTCGAAAAGGTCAGTCGGGATTCCTTTCATGAAGAGTCATGGTCACCGACCTTCGAAAAGGTCAGTCGGGATTCCTTTCATGAAGAGTCATGGTCACCGACCTTCGAGAAGGTCGACCGAGATTCCTTTGAGTCCAAGGTAAGGCCGAGAAGTTGAGGTCGAACACTTTAGGCCAAGTGTGGTCGAATACCTGTGAGGCCATGGGTGGCCGAGGAGTTGAGACCAAACATTTTAGGCCAAGTGTGGCCGAGTACCTGTGAGACCATGTATGGCCGAGCAATTGAGGCTGAATGCTTTAGGCCAAGTGTGGCCGAGTGGTTCGAGCAAGTTGATGTCGAACATAAATACTGAGGTCGAGCGGTTGGACAATTGAGGTCTTCCAAAGTATCACTCATTGGTTCCTTGTGACTATAATGGGATACTCGCTCGACCCCACAGTGGGCGATAAAATGTTTCAGGTGTAGGATCTTTGGGCAAATTTGAGGTTGGAGATGATTGAGGAGCACTGTAGCAGACTGAGTAGGACGTGCAGGAGACTCATCGAGCATTATAGTAGACCGAATAGGTTATTGAAGAGACTGCCTGAGCTTTTGGGAAGCTTAACTAGATTTTGTTCCGCTCATCCAAACCATGTGGAAGGGTTCTGTAAAAGGCACTATGATGTTTAAGTTAGTAGATGATCGTTCAGATGGCTAAATATGCATATTGTTTGCATGTTGATCTAAAGTCATACCTGTAACCTTTATATAATAGTTGTAATGGGATTTTACCTTTCGTTGGCCTAATGACGGCATAATCACACCTTAATTTGCATTAGAGTTTTAATGAGTTATTATCGTTAATAAAGCTAACTATGTTGTCAGCATGGATGATCAGTCTAGTGGGTGGTCGGCCTATGTGATCGACCTAGGTGATCAGCCATTGGTCAACCTGAAAGACTGTACAATACATTGTCCAATCTAAAGCCATGATTAAAATATAATTAACACAACGATTAACCTAAAAAATAATCAAAGATAGTTAACTTTGTGAATTAGACTCATTCAAGTAAAAAATATCTATAAATCATAATATCAATAATACACTGGATGAAACATATTATTACACTAATTAATTACCATATTTATTAACGTCTAACGGATTTGACTAAGTGAGAGTGTCTTTTGCACTCATTCGGTTAAAAGCCGACCAACACAGGAAGTTGGAGTTTAGAGTGATTAGAATGTTTGAAATTAGAATCATATATATCCAAAATTATTTTACATTGAATTCAATGAGTTTCACTCTTAATATATATAAATATATTTGAATTAAAGAAAAATATAAAAAAAATAATTTAAATTAACTATTTTATACGTAAACTAATTATAATATTTCTAATAATTTTTTCAATTTCTTTTATGGATGGTTGTATTTTGTGCAGGTTGTGCACGAAGTTGTGGAGACAATTGTAAGATAGTTTTTATGATGACATGGAGAAAACTGGTAAAGAACATGAAAGTGACTTGGAATTTAAATTCCTTTTGTTTCTTTTAACTTAATAGAAGGCTATTAGTATAGTTTATGCTTTTATTTCACTTCAATTTTGGAGGTAGGAGTGGCCTTTTCAAAAAAGGTGAAAAACGAGGAAAAAGTCCTCTAATTTAAGTGTGGCTTGTCCCCTTCTAGCGCAAATAAACCCTCTTCTCTCCTTTTCTCTCTCTGCGAGACTCCACTCAAAGCCATAACTTCTCTCACTTTTTTCCTCAAACTCCTATACTTTCTCACTCACTAATTTTCTTCACTTCTCTCGTCACGTCGTCATCCCCTTCTCCCTCCTAACCTAAACCTTAAAAATTAATCTTCAAAAAAAGACACAACACAAACAAAAATAACTCCTTTTTCTTACATTCGTGACAA

Gene Sequence:

>Vu_02177(+)

ATGGAATCACCCAACTCATCCGCCATTTTCCCACAATTCACCCTAGACACCACCAAAAACAATAACCCTGACCACTTCATTGTCGAGGACCTTTTGGATTTCTCCAACGACGATGCTGTAAACGCCGACACCATATTCGATTCGCTCCCTGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCCTTCTCCGGCTACGACCCCAATACCATTCCGGACATTGGTAGCCGGAGTCTCTCCGATGGTCATTTTTCCGGTGACCTATGCGTACCGGTATAGCACATTATATTGGTTATATAAAGTTGTAACATTATAATAATAATAATTACTGTACTATTATTAATATTATTATTATTATTATTATTATTATTATTATTATTATTTATTATTATTATTTATTACATTAGTTATTACTCCATCTCAAAATCAATGACCTCGCAACCTCATTACATGACCCAAGGGTAACGCACAAAGCCTGCATTCCAATTTGACCATCTTTATCTCCCTTAAAATCGCTAACTTGTGTAAATACATACATCACTATCAGTTTATCCTTCTTAGGCCAGTAATTTCAGGATCAGCTTAACAGAATTACCCTCATTTCACGGTCCAATAAACTACTTTTCTTACAATCGTTGCTCCAATTTACTACATTTGTTCTAAACAATAAAAATTATTATTTATCTATGACGAACATAATGAACCCTACAATTAACTGTTGCACATGCTAAACGTGCAAGAGTTTAATGTCTCGTGTACGTAATAATAAATTTTCAAATTATATTATTACGCAATATGTATAATTTTTGCTATTTCATTTAAATTTGAAAGCAGTATGATGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCGAGAAACGACCACGTACCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAATGGGTTTCATTCAGAGCCCACCCGAAACAACCCGATATTCAATTCGGAAGTGTCGGTCCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCTCCATGCAACTGGGCATCGCGCCTCCTCGTCCTGTCCCCAACGACGTCGTCTTCAGACACTGAGGTCGTTGCTCCTGTTTCCACTCATTCCGGCACAAAAAAGCCCGCGAAGGCAACACCGAGAAAGAAGGACAGCGGCGATGGCAGTGGTGGAGACGGACGCAGGTGTCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACGCTGTGTAACGCGTGTGGAGTGAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACAGACCCGCGGCAAGCCCAACGTTTGTTCTGACAAAACACTCGAACTCGCACCGCAAGGTTCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAACAGCACCAGCAACAACAGTTCCTACAACACCATCATCATCAGAACATGCTGTTAGACGTATCCAACAGTGAAGATTACTTGGTCCACCAACACGTGGGACCCGATTACAGGCAGCTTATCTAG