Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02117	LG1	26217728	26219134	PREDICTED: nodulation-signaling pathway 2 protein-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding

SNP	Position	Effect	Amino acid change
A/C	26217760	missense_variant	p.Glu11Asp
T/A	26218106	missense_variant	p.Ser127Thr
C/G	26218107	missense_variant	p.Ser127Cys
A/G	26218202	missense_variant	p.Thr159Ala
G/C	26218648	synonymous_variant	p.Pro307Pro
C/T	26218893	missense_variant	p.Ala389Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02117.1

MASLLSSSPIEAIMDDPDFLDFSKPSITTSSSSEEDWINLWSPLVDWGSLAAGEDNFQTLIDSIAHEDDVVSTPDQTIAQDSDLSSHDEKGLRLVHLLMAAAEALTPGTESHHLARVILVRLNELVSTTHGTNIERLAAHFSSALQNLLDGAGSAHSITTDTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPAPHLRITALSRGSAPGRRSIATIQETGRRLTAFAASVGQPFSFHQCRLDPGETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWSQALVERVFLGPRIANSVSLMYRSGGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEEMGNNKLVLGWKSRRLISASVWTSNS*

CDS Sequence:
>Vu_02117.1

ATGGCGAGCTTACTAAGCTCATCACCCATAGAAGCAATCATGGACGACCCTGATTTCCTCGACTTCTCCAAACCCAGCATCACCACCAGCTCTTCCTCCGAGGAAGACTGGATCAACCTTTGGTCCCCTCTCGTCGACTGGGGATCCCTCGCCGCCGGCGAAGACAATTTTCAAACCCTCATTGACTCCATCGCCCATGAAGACGACGTCGTTTCGACCCCTGATCAAACCATAGCCCAAGACTCCGACTTAAGTAGCCACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCACCACTCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTAGCAGCGCGCTGCAAAATCTGCTAGATGGCGCCGGGAGTGCGCACAGCATAACCACCGACACCCCCAATCCCACGGACACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCTATCTTAGAGGCCGTAGCCCATGAAAAACGGGTCCACATCGTCGACTTCGACGTGACCGAAGGAGCCCAATGGGCATCCCTAATGCAGTCCCTCTCTTCAAGAAGCACCGGCCCACCTGCCCCACACCTCCGCATTACCGCATTGTCCAGAGGCTCCGCCCCTGGACGGAGATCCATCGCCACCATTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCACCAATGTCGGTTGGACCCTGGCGAAACGTTTCGACCTTCGTCACTGAAACTGATTCGCGGCGAGGCCTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGCTTCCGAGCCTCAGGTTCCGTTGCTTCGTTTCTGAAAGGTGCGAAGGAGTTGAACCCGAGGGTTGTAATGGTGGTAGAGGAAGAGGTGGCGCGCGGTGGAGATGCCGGCTTTGTGGGCTTGTTTATGGATTCGCTGCAGCACTACTCGGCGGTGTTTGATTCTCTGGAGGTTGGGTTTCCCATGCAGAAATGGTCCCAGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATAGCAAATTCTGTGAGCCTTATGTACCGGAGTGGAGGAGAGGACAGAGGATCGTGGGAGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGACTGTTTAACGATGGATATAGAGTAGAGGAGATGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTGATATCAGCCTCTGTTTGGACTTCAAACTCTTGA

Promoter Sequence:
>Vu_02117::LG1:26215728-26217728(+)

TATTGTGGCCTCTTATTTATGAGATAATTATTTGTCATTACTCTTCAAATGTTTGGACACAATAGTCATATTTTATTAGTTTTATATAAGAACTCTCCAAGAAGTATAACTCACTTAAGTCTTATTTATACTTTTTATTATATTCTAATAAAAATTCTTAACTTTCTTACTTACTTGGTAAATGTCAAAATCGACCTTCTCAAATCTAAAACTTAGTAAAAACAAGATAATTAACAAAAATTCAAAAGAGAAGTAAAATAGTAATACAAAATTTATATTATTTTACCCAGATAAGGTTAAATTAAATTTTTTAAAGGTATTATGATATTATGTGATATTACGACAAGAGAAGTTAATTTTATTTATTAATCGTGATGTTTTGTGGTATTATGACGTGGATGAAGTTTTGTGATGAAGATGAGTAGTTATAATTTTGTTTAAAATTGAGAAGTGAAAATGCTGATTGTAATAAACAATAAAAAAACAATACTTTTTGTTTAATGTAAGGATTAAAAATCCAAAGAAAAAACTAAAAAAAAAAATAAAATACAAGATTGAGTTAGATGAACTTTAACTCAATTGTAAATAAAATCCAATCTAATTTATTTAGATTGAATGGGATACTATATTATAATTATTATTATAATAATAATAATAATAATAATAATAATACATTATTGATACGAACAATAATAAAAAAAAATCATAATTGGAAGAATATTAAAATAAACAGTTTTTTTCAGAATTCATTAATACAAAAAAAAATTCTTTGCTAAAAAAGCAACTAATTCAACTTAGAACATTTTAAATGAATAAACCATAATTGAAATTACCCCTAGTGCCTTTAAATCTTTATTAACATCTGAAAAAAAAATGACCTTACTTTGACATATTATATTTTCTAAAGAATATTAGATATTAACTGACATGTGTTCTTAAACAACCCTCTGTTCGCAATTCCCAATAAAAAATATAATTTTACTTCATAATTATCTTCTTAATTCACAGAAGTCAAGTAATTGTTTTGGGTTGAGATTCTTGTTGTTCACCACATGAAGGAACAATTGTTATTGGATTGAGTAAATTAATTAGAAGTTCATATTCTCAACTATTTTCCAATAATGGTGGCCATGTTTTAATTTCTAAATATCTCTAAAAAGTTGTATGTCTGCCTCATGTTTCACATGATTAATTATTCCAAAAGACATAATTTAGTTGTTTTTGTACGGAGAAAGCTTGTCTACAGTTATACAGGTATTTTTTAATATTATTTCTTTAAATAAAATCGATGAAATAATTAAGATCATTCAAGTTATTAAATTAAAATATTATGATATCTGTCCTCGATTAAATGTTGGTAGTGTTGAGAAATGATACTTTAATTAATTATAGTTTGTTGTTTGTTTTCTCAAATTAACTTGAGTAGTTTGCAGATAACATATAAGAATTTGTAAGTGTGGGATGATAAATCTCTCTAGTATTTATGTTAAATTAAACCTATTATTAAGATCTTTATTGATTTTTAGAAGGATTTAACTTAGTCTTACTCTCCTAATTTAATATTTAAGTTCCTCCTCTTTATGGGTCTAATAATTAGTTGGAAAACAAATCTACTATGTAAACAAATTAAAACCCAAAATTATCTAATCTTAGTTCCGAAAACTTTCCAAGAACTTAGACTACTCAGTATTGTCAGGTGCTTTATATAATTTAAATAAAAAATATAAAAATTAATAGATAACAAAATTTGAAAACAAATAAAAAAAGGAAATTATTTTTATATCATAAAATATATTCTTTAAATCTATCATTTAATTAACCTAATAATAAAATTATATTTTGATTGCTAAAAAAATGTAGAAGGTGTTAAAAAATAATTGTGTTTGTTCCTAGGCTTTCTCAGCCAACTTAATTATAATTATAAATCTCCCACTAACCAAAGTGAGTACGACACACCTCTCTACTTACTGTTGTAGTACAATTACTTTCTCTCTCTCTCA

Gene Sequence:

>Vu_02117(+)