Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02060	LG1	25301040	25302866	probable receptor-like protein kinase At1g11050	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	25301058	missense_variant	p.Gln603His
T/C	25301280	missense_variant	p.Ile529Met
T/C	25301340	synonymous_variant	p.Thr509Thr
C/A	25301472	synonymous_variant	p.Val465Val
A/T	25301770	missense_variant	p.Ile366Lys
C/T	25301847	synonymous_variant	p.Glu340Glu
T/A	25301872	missense_variant	p.Lys332Ile
G/A	25301904	synonymous_variant	p.Ile321Ile
G/A	25302082	missense_variant	p.Ala262Val
A/T	25302148	missense_variant	p.Val240Asp
C/T	25302171	synonymous_variant	p.Thr232Thr
A/G	25302178	missense_variant	p.Val230Ala
G/A	25302327	synonymous_variant	p.Cys180Cys
G/C	25302349	missense_variant	p.Pro173Arg
A/G	25302357	synonymous_variant	p.Ile170Ile
C/G	25302498	synonymous_variant	p.Val123Val
C/A	25302561	synonymous_variant	p.Leu102Leu
A/G	25302624	synonymous_variant	p.Thr81Thr
A/C	25302650	missense_variant	p.Phe73Val
T/C	25302683	missense_variant	p.Ile62Val
T/A	25302697	missense_variant	p.Lys57Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02060.1

MENHVTFLLLFLFITILLPAAAPSSCPINFTYVQTFPWNTSTCTNTTNKQPCCSTLKTIFHIGLSQHLKQTSFFQLPNENTSSVCLSDFQEKLTTLSIHPSLVPSCFPNPSQFVTNSSTCAGVVTSRDWEQKVNSVRLIPMQTLCKDLDDQTSCNNCIAASLKVALQLTIDNPNATETGCFSFASLYAAAVVNPEGTTDVTTIGCIMGVQLSSEVAKGSSNKRGKVLKVVFTLLGAVVGVIIVFVLMVVMYRKWEKRRKENAYHREIENGIRNSVLTNTGAKWFHISELERATNRFSRRNKVGQGGDGVVYKGKLADGTLIAVKENLNLQSKGDEEFCYEVDIISKIKHRNLLALRGCCISSDNFIGKRRFLVYDFMPNGNLSYQLSLGGLTWPQRKNVILDVAKGLAYLHYEIKPPVYHRDIKATNILLDSKMNAKLADFGLAMQGSEDQSPLTTRVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDTLNSSADAITDWVWTLAESGKMMEIFDESIREGPGKIMQRFVHVGMLCAHAMAALRPTIAEALKMLEGDTDVPKLPDRPVPLGHASFQSSLLHGLQGSGRSMQQVSSYS*

CDS Sequence:
>Vu_02060.1

ATGGAAAACCACGTCACGTTTCTCCTTCTCTTCCTCTTCATCACCATTCTCTTACCAGCTGCTGCTCCTTCATCTTGTCCAATCAACTTCACCTACGTTCAAACCTTCCCTTGGAACACTTCAACTTGCACAAACACAACCAACAAACAACCTTGTTGCTCAACCCTCAAAACCATCTTCCACATAGGCCTCTCCCAACATCTCAAACAAACATCGTTTTTTCAACTTCCCAATGAAAACACTTCCTCCGTTTGCTTATCAGATTTCCAAGAAAAACTCACAACCTTGTCAATTCACCCATCTCTGGTCCCTTCTTGCTTCCCTAACCCCTCTCAGTTCGTCACAAACTCTTCCACATGTGCAGGTGTGGTGACTTCTCGAGATTGGGAACAGAAGGTGAACTCGGTTAGACTTATCCCGATGCAAACTTTATGCAAAGACCTTGATGACCAAACTAGCTGCAACAATTGCATAGCAGCAAGCTTGAAAGTGGCTCTTCAGCTTACTATTGATAACCCAAATGCCACTGAGACGGGTTGCTTTTCGTTTGCATCGCTGTATGCTGCAGCGGTTGTTAATCCAGAAGGCACAACTGATGTCACCACGATCGGTTGCATAATGGGTGTGCAACTTTCTAGTGAAGTGGCAAAAGGGTCATCAAATAAGAGAGGAAAAGTTCTGAAGGTGGTTTTTACGTTATTGGGTGCTGTTGTTGGGGTTATTATTGTTTTTGTGCTGATGGTGGTTATGTACAGGAAGTGGGAAAAGAGAAGGAAGGAAAATGCTTATCACAGGGAAATTGAAAACGGTATCAGGAACAGTGTTTTGACGAACACTGGTGCAAAATGGTTTCACATATCGGAGCTTGAACGTGCCACCAACAGATTTTCGAGGAGGAATAAGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAGCTTGCAGATGGCACTTTGATCGCTGTTAAGGAGAATTTGAATTTGCAAAGTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGATATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAATTTCATAGGTAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGCAACCTCAGTTACCAACTGTCACTTGGTGGATTAACATGGCCACAAAGGAAGAACGTGATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAGCCACCAGTTTATCATCGTGATATAAAGGCTACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCATGCAAGGTAGTGAGGACCAGTCTCCTCTCACCACAAGGGTTGCTGGCACGTATGGTTATGTGGCACCCGAGTATGCTTTATATGGGAAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTCATCTGCAGATGCAATCACAGATTGGGTGTGGACACTAGCAGAATCGGGAAAGATGATGGAAATTTTTGATGAGTCAATAAGAGAAGGGCCAGGGAAAATTATGCAAAGGTTTGTTCATGTGGGAATGCTCTGTGCTCATGCAATGGCTGCTTTGAGACCTACCATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGACGTTCCTAAATTACCAGATAGGCCTGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAAGGAAGCGGAAGATCTATGCAACAAGTTTCATCCTATTCATGA

Promoter Sequence:
>Vu_02060::LG1:25302866-25304866(-)

TACAACATATATGTTGCTCTCATCGGACAACTCCATTTCGTGCAATACAATCTACGAAATCAAACCAAAAAGGTGAGACTTTGAACAAACAAAAGAAAACTTTCATTTATAAAAGCAAAAACGAGACCTTAAAGAAAGAAAGGACGCACCTTCAACAGAAAAACGAGAAACCTTCAACAAAGAAAGGTCAAACCTTCAACAGAGAAGAAAAATGACATACCTTGAACTGAGAGTGCAGAGAGAACGGAGGACTAGAGAGAGAACAGAGAGTGGAGAGAAAACGTAGAATTTGAATTGTAGAGAGAGAATTAATGAACTTTTTTTCTAATGAAAATGACAAGGGTATTTTGGGATTCATAAGTGTAATCTGATTATATTTTCCCACGTTATCTTTTTCAAATAAAAAAAATCATTTTAACCTCCTCCAATACTATGTTGACACATGGCAATTGTGAAAAAGTTATTAAAGAAACGTTGTCAACATATCAGTATTTTCCCAGAGTACTTATTGACTGTATACACGTTTATATCAATAAAAACAAATTTTTTTATGACGTGGATTAGACTCATGTAATTTATTTAATTATATTATTAATTTAATATTTGGGTTGTCAAATAAAATTGCATTTTTTCTAGCGTGGGTTTAGAGTAGGTTTAGCGTACTATATTGTTCATATTTTATTTAGTGTCATTTTAAAACTGGTATAATATAATCTGTATTAGATCACGCTTTTTTATGGCAGCTAAATACAAATATTCTTATAGTGTTCCAACATATTTTTGTTGTCACTTTAAGAAACACATAAAGCTTCAAACGAGCTTCAGCATATTTCTATTTGTGGAAAAGAAGAATTGTATTAACTAAGGACTAATTTGTTGAAGATGATAGAAGACTTAAACTAAATAATAAATATGGTACATGATTTAATGTAACGTTGATAGTTGCACTCGATAATGTTATCTTATTGGTTATGCAAAAGACGAAGTGAATTTGACTACTATCATCCAAAAATCTCTTTTAACGAATAAAAGTTTGAATTGATGTTGAAAGTGTTATTAGATAGTGTTATTAAATTCCTTTAATATTCAATTAATTAGATTTATAAGCCTCATTTTTTATCTTTTAACTTAGAATAACTAACTTATATATATTAGCTAATTCATGATCTAGTTTTGAGTTTTTTCTTTTCTTTTACAGCAATATTTAGTGTTTTATTTAGTATTCGAGTTCGAGAGTATACAGCTAATTGTAATCGTAATTCAAAATTTACCAACTAGAGTATCAGATACATACAAAATAAGGACTTTTTAAAACTTTTTCCTTTTATAAAGCTATCGTCAAAAATCTTATACCTTTCAAATCTCATCAAATTTTTCTAGCTTTTAAACTTTTCACACTATTATTCATGTTCAAATTTGTTAACCTATACCTACAGGTATTGGAGAAAAAGGTTAGCAAAGAAACTGAACTATAGTAATTAAAAAAAGTTCAAAAAAGTTAAACAAACCGTTAAAAATCAAACACTAACCGTAATAAAACATGCTAAATAACCTTGTCAAAGTTAAAATTTTTTGCTGAATAACAAATAGTGTTTACCATTTGAATTCTGTGATGAACCACTCTTCTTAAAGTTACCTTTTAGAATTTGTTGACCCTTTTTAATTATATTATACATATTTGTTTATTTTTAATTTTTAATTTTCATTATTTTTCAACATATATAAATACTTTTAAAAAATATTTCACGAAAAAGACTAACTACCACTGTTACCAAATGAAAAAAAAAGTCAAATGCGACCACCAAAAACCACCGGTGAATATTTAACCGCCAGATGCGACTTTTTAAAGCAAAACGTAAGTTTTCGAAGTGCCTTTAGACCATTGAACTGACCAAAGCAATCTAAGTTTGACTGGTACAACATTGTTTCTCTGATATCCTAAGTTAAAATGCTTCAAATCTAATGTTTCAAAAACCATTGTTTAAACACCACAGATCTCA

Gene Sequence:

>Vu_02060(-)