Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02006 LG1 24566067 24567974 PREDICTED: myb-related protein 305-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 24566081 missense_variant p.Asn5Lys
C/T 24566086 missense_variant p.Pro7Leu
C/G 24566089 stop_gained p.Ser8*
C/G 24566194 missense_variant p.Ala43Gly
T/A 24566198 synonymous_variant p.Ile44Ile
C/A 24566339 downstream_gene_variant
G/T 24566363 downstream_gene_variant
T/A 24566467 downstream_gene_variant
T/A 24567040 downstream_gene_variant
A/G 24567059 downstream_gene_variant
G/A 24567461 missense_variant p.Ala80Thr
G/C 24567619 synonymous_variant p.Arg132Arg
C/G 24567739 missense_variant p.Ile172Met
C/A 24567755 synonymous_variant p.Arg178Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02006.1
MAMDNSPSAAENMPNYRVNHWRQDEDQKLTQLVQEHGPQDWNAIAQHIQGRTGKSCRLRWRNHLDPGVNRNSFTKEEEERLIAAREVYGAKWATIAKLFEGRTDNALKNHWHVLIARKRKEGNNGSLQELMNGSSSSSSHDDALFDMMNFNATQRALAPVCPSDSLSPMNFGSVPSFSDSFPGKEESDPFGLLNPAATSGGMMKKGLFHSSSSAFTKFKGSSSSDRNEPHDAGFKDGTFYDFLGVGADDE*


CDS Sequence:
>Vu_02006.1
ATGGCCATGGACAATTCTCCTTCAGCTGCTGAAAACATGCCCAATTATCGTGTTAATCACTGGAGGCAAGATGAGGATCAAAAGCTAACCCAACTTGTTCAAGAACATGGTCCCCAAGACTGGAATGCAATTGCTCAACATATACAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTGGTGTTAACAGAAACTCTTTCACGAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGAGAGGTTTATGGAGCAAAATGGGCAACCATAGCCAAACTGTTCGAGGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGGCAACAATGGAAGTTTGCAAGAGCTGATGAACGGTTCAAGTTCTTCCTCTTCTCACGATGACGCATTGTTTGACATGATGAACTTCAACGCTACACAAAGGGCACTTGCACCGGTGTGTCCCAGTGATTCGTTGAGCCCTATGAACTTTGGATCTGTGCCATCCTTCTCCGACTCTTTTCCTGGGAAGGAAGAGAGTGATCCTTTTGGGCTGTTGAATCCTGCTGCTACTTCTGGCGGAATGATGAAAAAGGGCTTGTTTCATAGCTCATCATCGGCATTCACTAAATTTAAGGGTTCTTCTTCCTCGGACAGAAATGAACCACATGACGCTGGATTCAAGGATGGTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGAGTGA


Promoter Sequence:
>Vu_02006::LG1:24564067-24566067(+)
AAGTATATAGTTAAATAACATATTTCCTATATAAAGTTCATATAATTAATATAAAATATATTTATTGATTAAAATAAATGAAGACTCGTGTACGTTTATTCATTGAATATATAAAGATCATTAAAGGCAAGTATTAATTATAAAAAAAGGTTAAATGGTTGGAAATAAACTACCAATTTACTACTTACATCATTAATTCAATCAGTCATTGATATTATAATAAAAATTAAATTCATCCTTAATAAAGATAAAAATACAATATTATTCTTAAAATCATAAATTTTTGCATCAACTAGTCATTTAAATTGTAATAATAAAATAAATTTGACCCAAATGATAAATTTATGAATCAATTAGTCATTTGTATTTTCACTTAGTTTTTCACAGCGAAGTGTGCTATTTATTTATTTATTTTATTCAATTTGACGTTGTTGATTAATAAATCTTTTTTTTGTGTTTCTTTTTTATTTTTCTTATTTCTCTTCTTATATTATAATTGTTTTTGTTTATTTCTTTCTCAATTGTTATCGTTGTAAGAATTATTTATAAATCATATTTTTTATATAAATTGTGATCTTAAACTGATATGAAAAATAACATTTTCTATATAATTTTACAATTGGTATAAAAAATTGAAACTTTTTATATCGATTTAAAAATCATATAAATTTTTTTATAAACCAATATAAAAGAATTTTCCTACTTTTAAGGTCCATGCCATTATTTTATTTATTAAAGGATCAATTAGATTCTCAATATGATTGTAACTAAATTGAAGGACATGCAATTGAAGTATTGTTTTATCATTTTAAAATTTTTAAGGACTAATTTGATAAATTATTACCATTTTCATGAGCTAAATTGATAGTTTGCTCAACAATTATAACGAAAATTCAACAATAAGTTAATGTTAAAAAAAACGTATCTCTTTTATACGTTAGAAATATTTAAAATTTTCAAATGATATATTCCTAGTTTATCCATTGGGTAGTGTATTTTTGTTAGTAATGATTTTTTTCCTAATGTGGAAAGTAAGACTAATTAATATCCACAACATATTCTATCTTTAATGTATGAACATATAGAGTGTCTAAGTATACATCAATTTATTTTTATCAGTATGTAGTGGTGTAACAACTATTTACATTACCAAATTCACAACTAGTATTAAATTAGTGAATATCTTGAATAGGTATGCAATTTAATCATTAATTGAATTTAATGAATATTATTTTAAATTAAGTAATCAAATTAATTGTCGATTCCCAGACACACTTTTTTCCTTCTAGTTTAACTCAAGAGAGCATAGCAAGAAAATAAAACTTTTTTTTTTGTTTGATTTAGTTTCCCAAAAACTTAAACCATATATTATTGTTCTGTCAAAGGTAAAATATGTTTTTCTTTCCTAAATTATTATAAAATAATGTGTTTCATCTATACACTTTATAAAATTTTTGTAAACTCGGTTTCTTACATGAAAAACACTCACATGCCGTTTAATGAAAAAGGTGTTTATATAATTTTTATAAAACTCAGAATCTAAATAATTTATTATTTATTTTAGAAACATATTTTTTATAATAGTTTGAAGAAGAAAAAATATTTAACTCAATATAAAAATTTCCTATTAGACAATAAAGTTATTACAGTTCTTATGGCAATTGTAAAGAATTTGAATAATAACTAAACATGTTCTACAAATATTTTTGCAAGTAATCTTATTTTAACATAATAATTAATATCCTTTCTATTTTTCCTCTTTTATTTTTGTTCATATTTATCAATAAATGAATAAAAGCAAGAGGATAAGTCTCTTTTTTCCCAGAAATAGTAAAAGAAAAACACAGAAAAATTGAATATTTTGTTTTTATGAGGTAAGAAGTTAAGTATTAAATAGTGAGCAACAACCCTAAAAAACGTGACCATCTTTGTGCCCTTTTTCATCACTCTGAACTTTAGGGTTTCTCTCTGCAGTTCCTGATTTTCAAGAATTGAATCCA


Gene Sequence:
>Vu_02006(+)
ATGGCCATGGACAATTCTCCTTCAGCTGCTGAAAACATGCCCAATTATCGTGTTAATCACTGGAGGCAAGATGAGGATCAAAAGCTAACCCAACTTGTTCAAGAACATGGTCCCCAAGACTGGAATGCAATTGCTCAACATATACAAGGACGAACTGGTAAATCTATCAATTAATTAATTAGAGTTGTAATTAAGATCGTTAATTACATATATGTCCCCTTAAAAATATAATTGGATTAGGTTATTGGAATATATATGCAGTTCATATGTCCCTATTTTTTTTAGCATTGCTGCATGTCTAGAACTAAAAATTGAGTACCCCATCACGTTATTTGTTACGAAAATCTAGTGGAATAAAAATTAGAATATAATTTAGCTTTCGACGGAGAAAAAAATGAGATTTTTTTGAAAAAAAATTATAAATCTTAACTAAACAATTATACAAGAGTGATAAAGATTGGTTTGTGGATCATATGGTTGGAATCATGTTCTTATCTTTCGTGTTCTTACAAGGTTTTCAATATTTTAATTGGTTGAATAAAATGATTATATTTTAATGAATTAATTAATCAATTAATTAATCAATTAATTAATTGTATTTGATATTTTCTTACGTGCGTGCGCAGGGAGAGAAAGAAAAAATCGATATTCACGAGTTGATAAAATACATTAGCTTCCATTAATACAAGAAAATGTTTTTTTTAACAATTCTTTTTTTATAATTTTTTTATAAATACTTATGCGGTAGTTTTTATTGTTCTTTTTAAATATATGGACCAACAAAATAATGATACATAATTTATTATCAAAAAATTATTAAAAAATTTTAACTAATCTAATATAACCTGTGTTAAACTGAAATTAATATTAAAATGCTATATAATATATAATCATGAGAAATTATTTTATTATGATATACTAAATAACAAGTACGGAAGATAAATATTCAGAACATTTTTGTTTTTGTTTTTTGTAAAATAAGAATAAATCACAACTAAATATATATACAGAGTGGTAAGGATAGATTTTATTCACATCAACCATAAACATCTTATGTACATATGTTCATTGGAATCAAGTTCTGATTTATTTATTGCACAAAATTCATATCAGGTTTAACAAATTTAATCATATTTGATATTTCTTTTGTCACATACCAGCAGATAAACTTCGAGAGAAAATTATAAACAGAAATTAAATATTGTATAAAATTCTTCTGATGCAGATACGGGTATCACTCTATTATAGTATATATTTATAGTTTAGTAAATTTTGTAATGTATTTTGAAAAGTGGTTTTGATTATTGTTCAGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTGGTGTTAACAGAAACTCTTTCACGAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGAGAGGTTTATGGAGCAAAATGGGCAACCATAGCCAAACTGTTCGAGGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGGCAACAATGGAAGTTTGCAAGAGCTGATGAACGGTTCAAGTTCTTCCTCTTCTCACGATGACGCATTGTTTGACATGATGAACTTCAACGCTACACAAAGGGCACTTGCACCGGTGTGTCCCAGTGATTCGTTGAGCCCTATGAACTTTGGATCTGTGCCATCCTTCTCCGACTCTTTTCCTGGGAAGGAAGAGAGTGATCCTTTTGGGCTGTTGAATCCTGCTGCTACTTCTGGCGGAATGATGAAAAAGGGCTTGTTTCATAGCTCATCATCGGCATTCACTAAATTTAAGGGTTCTTCTTCCTCGGACAGAAATGAACCACATGACGCTGGATTCAAGGATGGTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGAGTGA