Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_02005	LG1	24502102	24506857	PREDICTED: scarecrow-like protein 1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/A	24502427	missense_variant	p.Ala551Ser
C/T	24502430	missense_variant	p.Glu550Lys
T/G	24502520	synonymous_variant	p.Arg520Arg
G/A	24502561	missense_variant	p.Ala506Val
T/A	24502952	missense_variant	p.Ile376Phe
C/A	24503749	missense_variant	p.Arg110Met
G/A	24503837	missense_variant	p.His81Tyr
G/T	24503842	stop_gained	p.Ser79*
T/C	24503845	missense_variant	p.Asn78Ser
A/T	24504036	stop_gained	p.Tyr14*
T/A	24504037	missense_variant	p.Tyr14Phe
T/A	24504117	splice_region_variant
T/A	24504159	intron_variant
A/T	24504163	intron_variant
T/G	24504164	intron_variant
T/A	24504250	intron_variant
T/C	24504295	intron_variant
A/G	24504341	intron_variant
C/T	24504369	intron_variant
C/T	24504480	intron_variant
T/A	24504513	intron_variant
C/G	24504514	intron_variant
T/G	24504515	intron_variant
T/C	24504523	intron_variant
G/A	24504549	intron_variant
G/A	24504738	intron_variant
G/A	24504757	intron_variant
G/A	24504844	intron_variant
T/C	24504894	intron_variant
G/A	24504937	intron_variant
G/A	24504943	intron_variant
G/T	24504945	intron_variant
G/A	24504946	intron_variant
C/T	24504949	intron_variant
T/C	24504966	intron_variant
C/A	24504969	intron_variant
T/A	24505008	intron_variant
G/T	24505010	intron_variant
A/T	24505306	5_prime_UTR_variant
A/T	24505314	5_prime_UTR_variant
C/A	24505587	5_prime_UTR_variant
A/T	24505654	5_prime_UTR_variant
A/T	24505664	5_prime_UTR_variant
T/A	24506228	5_prime_UTR_variant
T/A	24506229	5_prime_UTR_variant
A/T	24506601	upstream_gene_variant
G/A	24506623	upstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_02005.2

MSLVISTELADASYRNAKLYTLKGTDVTPDLSSHNFVPDKHRNMYITDSYSSENYEKYFRDSPSEELIEPSSSSISGNSVHPDSSYLLRASSGASVIVNNPFDSRILSTRHHNAYQSSFESDFLENRSPDGLDFDGEMRLKLQELEKALFSDEEEEEEDIFETAQIMDIDPDMAEWANPLQGMLLHDSPKESSSSDSSNISSISSTTKETSQNSPQTPKQLLYECASALSEGNEEQAQSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPPSSDRLAAMQILFEICPCFKFGFIAANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQALASMPGRRPHVRLTGVDDPETVQRSVGGMNIIGKRLEKLAEELGLSFEFRAVASKTSIVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRESQDRMNVERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPCPMSTNVREAIRKLIITQYCDRFKIKEEKGALHFGWEDKNLIVTSAWK*

>Vu_02005.1

CDS Sequence:
>Vu_02005.2

ATGTCATTGGTTATATCTACAGAGTTGGCTGATGCATCATATAGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACACCTGATCTGTCCTCCCACAATTTTGTTCCGGATAAGCACAGAAACATGTATATCACAGATTCTTACTCCAGTGAGAATTATGAAAAGTACTTCCGTGATTCACCATCAGAAGAACTGATAGAACCGTCTAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGACTCTTCTTACCTTCTCCGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTCGACAGTCGTATCTTGTCTACAAGGCATCACAACGCCTATCAGTCCAGTTTTGAATCAGATTTTCTGGAAAATAGGAGCCCTGATGGCCTTGACTTTGATGGTGAAATGAGATTAAAACTACAAGAATTGGAGAAGGCTTTGTTTTCGGATGAAGAAGAGGAGGAGGAAGACATATTTGAGACTGCCCAAATCATGGACATTGATCCTGACATGGCTGAGTGGGCCAATCCACTTCAAGGTATGCTACTTCATGACTCACCAAAGGAGTCCTCATCCTCTGATTCTTCCAATATTAGCAGCATAAGTAGCACCACCAAAGAAACTTCACAGAACTCACCCCAGACCCCCAAACAATTACTTTATGAATGTGCTAGTGCGCTTTCAGAAGGAAATGAAGAGCAAGCCCAATCTATGATAAACAATCTCAGGCAAATGGTCTCAATTCAGGGGGAACCTTCTCAAAGAATTGCAGCCTACATGGTGGAAGGGCTTGCAGCTCGCGTTGCTTCATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAAGAACCTCCTTCTTCAGATCGTCTTGCAGCTATGCAGATCCTATTTGAGATCTGCCCGTGTTTTAAATTCGGATTCATCGCTGCAAATGGTGCTATAGTTGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACACAGTACATAACTCTAATACAAGCACTTGCTTCAATGCCAGGTAGGCGACCTCATGTGAGATTAACTGGGGTGGATGATCCTGAGACTGTGCAGCGCTCTGTTGGTGGCATGAACATCATAGGAAAAAGGCTTGAAAAGCTGGCAGAGGAACTTGGATTGTCATTTGAGTTTCGAGCAGTGGCTTCAAAGACCTCAATTGTCTCACCATCAATGCTCAATTGTCGTCCGGGAGAAGCACTTGTAGTGAACTTTGCATTCCAGCTTCATCACATGCGTGATGAAACTGTATCCACAGTGAACGAGAGAGACCAACTTCTTCGCATGGTTAAGTGCTTGAATCCAAAACTTGTGACAATTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCAAAGATTTGTTGAAGCATACAATTACTACTCTGCTGTGTTTGACACTCTTGATGCAACTCTGCCTAGGGAGAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCAAAGGACATTGTCAACATTGTGGCTTGTGAGGGCGAGGATAGAATAGAACGGTACGAAGTTGCCGGAAAATGGAGGGCAAGATTGACCATGGCTGGCTTCACTCCATGTCCAATGAGCACAAATGTTAGAGAAGCAATTAGGAAACTCATAATTACACAGTACTGTGACAGGTTCAAGATAAAGGAGGAAAAGGGAGCACTTCATTTTGGGTGGGAAGACAAAAACTTAATTGTTACTTCAGCATGGAAGTGA

>Vu_02005.1

Promoter Sequence:
>Vu_02005::LG1:24506857-24508857(-)

AATTTAAATGATTTTTATACCAACAATATATATAAATTATAAAAGTGAAAGTGAGTGAGAAGGCACTATTGAAGTTTACACGACATTTTGAGATATAAAAGAAAAAAGTGTTACAATGCTATGTTGGGTTGTCCCACGCGTGTGATTCTAGCGCGTTTCTAACATTTTTATGTGAAAAGAATGAGATGAGCAAATAATTATGGGTCTATATTTTATTCTTAAAATGAATGAAAACTTCAACATGTCTTGTAAATTGTAATAATTAGTAAAACTGAAAACAATTAATATTTGAATAAAATATATTAGTTTTGACACAAAACACGGTTAGTTATTAAAGTGGACTATTTGCCTTCAAATGATATTGCACTCAAATTTAATGAAGGATAATGATATTTTGATAATATTTTTTTTGACAACATTTTAACATTATCTACGTGTCATTCTGTGATTGGTCCATGTTGATGTTTATGATTATTATTATTGATTGTGGAGTAATTTTGAACCAATCACAGAATGACACGTAGATGATGTTAAGATGTTGTCAAAAAAATGTTGTTAAAATATCATTATCCTTTAATGAATATATAGAATTAATGGTTTAATAATTTTGGTTTCTGTATTTCACTTAATTTTTAGTTTCTGTTTATTATCTTTTTTAAAAAAGTTCTTGTATTTTAGCTAAATGTAACTATCGTCCTTGATTTTCTTTTACATAATTTTCATTCTTTCATTATAATTATGCTTATGTATTACTTTTAATTATGGATAATGATATTTTGATAACATTGTTTTTACAATATTTTAACATTATCTACGTGTTATTATGTAATTGGTCCAAAATTATTTCATAATCAATAATAATAATCATAAACACCAACATGGACCAATCACATGGTACAAAGATAATGTTAAAATATTGTCAAAACATTATTATCCTTTAATTATCTAAGCTAACACATTCTATCTCTTTCAAAAGTAACATGCTCAATAATACTTAAATATTTAAATATTTAATTTGTTTATTTTTTCAAGTTATCACTTTGATTTTCACTTAATATTCCTGTAATATTATTTCACTAGTTAATGATTGTGAAGTAGGTTAACACATTATTAGTACTCATATATATGTTATATATATGGTTGTTAGGTCAATTTGCTTTTAACTAGACTACAATAAATATAAAAGTAAATAAATAAATTACAAAATAAAATCTACTAAAGTAAACTAGGTTATATAGTTAATTCGAAATAGGTTATGTTATATTACAAAACTTTTAGCTTTAAAAAAATAAAGTTAAATTAACTTGTTTTTATTTTAAACTAATAAGTATCCAATTCATATGTGAACAAGATTACTTCGTGTTACACAAAAAGTAAAAATAACAACTTTTTTAATTGATCTCTCTGAATGATTGTGTGTAAAAGTTGGTATTTGTCCTTAAACCCATACTTAAATCCTCATTTAGGTACAAGTAATATACAATTAAATAATTTTATTTCATAATTAAATATTTGAGATTTAAAATACTTTTACTCGAATGGAAATTAAAAATTTAATGTAAAACTTTGTCTCAATTTTTTATACTTAAATTTAGAATTAAAATGATATTTACTGATTTATGAAATTAAACATACTTTAAAATGTTAAATTTATCCAAAAGATAAATTACCGATAAAGGTATATTCGCCAAAAATGGATCGGGTGTAAACGCATGAATAAAACTCATGTGGCAACGCGTCTATTTCAAAAAGTCCTCTTTTTTTTCCAAATAGGACTTAAGTATTCTAAAATCTTAGAATGTTTTTATATATTTATGTTGTAAATTCTACTTTTACACCTTTTAAAGACAATTTTACTAAAATTTCCAAATCCTATGAGTTTTTTTTTTTTTTTTGGAAAGATGTGGATTCTCACCCTCTTTGAGAGCCAAGGTAGTAGAATCATTCAACCCTTTCAATCAATAATTTAACATAAATAAGATTGTGTGTAGCTCAGTTTC

Gene Sequence:

>Vu_02005(-)

ACATTAGGGTTGAAGTTGAGAGAATAGTGAAAAGACACTATTGCCACACATGGTTGCTGATTATGTGAACCCCACAATGGCATTCTGTGCAGCTTGGACCGTCTATGATGGGTACGTTTGTCATTGAATGATCATAGTTTCGTGTGGCCAATGTCTTCGGCTGATAGACAAGTTGCAGAGAATTCCAAGAAGTTTCGTTAATTCTAGGTGGGTTTGTATTTCTTTTTCCACTTGCTTACCACTTTCACTCGGTTCCTGAAGCTAAGATTGTCGTCATGATTATCATATATAGTGAATAAACAAATGGGCATCTTTAGACTATAATTCATATTATTTTCTTACTAGGGTTGCTCAATTGCTCCTAACTTACCACAATTCTTAATTCATTGGAACCTTTAAGCTTAAAAGTCTTGTTATCTTTTCTTCCTTTGTCCACGTCTATATTTATTATTCTTAGATTTTATTGGTTGTGTATATCAATTCTCAAGTACCTTGTCAACATATCTTTTGTTTATCTGTTTTGTTGCTATTCCACCAATCTGACCTTCCTAAGGAAACATTTTTTTTTAATATATTAAGGAGACATCAAGAGGTTGTCTTGCTTGCCCCTTTGGGTTGCCTATAATCAAATTTCTCTGCTTCTTGGTCAAAAGCCTTACCCGGGTTTCTGTCTCTGTCTCCAAGAGCATCATCATCATCATCCTCATCTGCCAGAAGTTGCACCAGGTACCCTTTATCCTTTCTTTGATTTCTTCTACCTCTAGAATATTGATTATGTGGTTCAATTTTTGTAAATTGGGTGGTTCCTAATAACAGGTATCGGTTGCAATTCTTGTGTTTATTGTAAGTTGAATTAAAGCAAGAGTGGAGAAAAAATGTCTTTGCTTTCTAGTTTCTGAATTCAGTGTTTTTTCCAGGGAGTATTTAGCTTTTTCCTGTCAAGGGTTGGTTCCCCAAAAATATATTTTTTTTCTCCCTCATCTTTTTCTTTTCCTGCATTTGCAACAAAGTTTTTGGAAGGGAGTTTTGTTGTCTTGAAATAACGTTGTTTCGTCACAGTGGATTCTTTAACCCTTTAGTTTCACATATAAAAAACACAGAGTGATTGGTTGACTAACTGTTCTTGGAAGTCTTATACTTTTGAAATCACAATTTTTGTTCCAACCAAGATACTCGTTTTTTGTGCTTTCTAGTTATTTAAAATGGCAAATTTGTTGTCAATATATGTATGAGTCCTTTTTTTTAGTGTCAGATAAGATTAATGTCTGAAGAATCATCTATCAATACAAAAGTTTTAATTTCATGGGTATTTTCATTCGATTTCAAGAATGCGCTTGGTTATGTTGATTGGATTTAATCCAGTTAGCATCTGCAGTCATTTCACTAGATTGTACACATGGGTGTAAACTAAATATATTTTTCTCTTCCAAATACTGTGTTGCTTGGTGAATAGTATCTCTCAAGATTTTTGTCTTTCAACAACCTGAATAGCATCGTGTGATGTAGTCGACCTTGCCTAGCAGGTTAAGGTTCTTGTTGCTGTTGTTGTTGTCCCGAGTAATGTGTGAAACCACTATTTTAAGAACGAAATTATTTGCTATGCAAGGTGAAGCTTTATCTTCCATATAAATTTATGTGATGATGGCCAATTATTAAATTTTGTTAATAAGTTGCTTCATATGTTTATAGATCGGTTGTGTTCTAAATCAAAATGTTTTCTAATATTGTTGTCTTCCCTTTTGTTTCACCAATCTCAGCGAAGACATCCCAGAAGGTTCAACGAGATTTCATCAGTGAGCATTCATTTTACAATTTCTCAAGGTAGGAAAGGGAGGAAAAAATAAAGCCTAGTAGTTTTAAGGTTTAATCCTTTTGAACATCCTTATTTGTGAAGGTTTGTCTCAAATAGCTCCTCGTATTCTAAATGGTCTCAATTAGGTCCCTTATTGTATAAAATTGAATAAATTTAGACCTCGCCGTTAATTAGGCTGGACGATGTTAAAAATTTTGATGCGTGACTTGGTAACATGAGCAAGTTGTTATGACGAGGCATACATTGGTCGTTGAGTTGGCTTTCTTTTAAATAAGTTGGTGGTCGGCCAGGTGGTCGGCCACTCGGCCTGGTGGTTGGCTAATCGGTTTGGTGGGCGGCCACTCGGACTGGTGGTTGGTCACTAGGCAGGTCGGTCACTCGACCTGGTGGTCGGTTTGGTAGTCGACCACCAGGCCGAGTGGCCAACCGCCAGGCCGAGTGACCGACCACCAGGCCAAGTGGCCGACCTCCAGATCGAGTGACCGACCGCCAGGCCGAGTGGCCGACCACCAGACCGATTGACCGACCAAGAGGCCGATTGGCCGACCACCAGGCCGAGTGGCCGACCACCAGACCGAGTGGCCGACCACCAGACCGAGTGGCCGACCACCAGACCGAGTAGCCGACCACCAACTTATTTAAAAGAAAGCCAACTCAGCAACCAATGCATGCCACGTCAGAACAACTTGCTCATGTCACCAAGTCACGCATCAAAATTTTTAACGCCGTCCAGCCTAATTAACGACAAGATCTAAATTGATTCAATTTTTCATATTCAGACACCTAATTGGGAGATTTTACAATATGAGGACCTAATTGAGAAATTGCTACAGAAATAGAGATGTTCTAAATGATTAAACCTAGTTTTAATTGATGGCTGATTTTATAGCATCTTCCTTACTAATCTGTGTAATGTTTTGGGTGCAGACTGAAATTTTGTATGAGCTGAGTGAATAAAAGGAGAACTATGTCATTGGTTATATCTACAGAGTTGGCTGATGCATCATATAGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACACCTGATCTGTCCTCCCACAATTTTGTTCCGGATAAGCACAGAAACATGTATATCACAGATTCTTACTCCAGTGAGAATTATGAAAAGTACTTCCGTGATTCACCATCAGAAGAACTGATAGAACCGTCTAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGACTCTTCTTACCTTCTCCGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTCGACAGTCGTATCTTGTCTACAAGGCATCACAACGCCTATCAGTCCAGTTTTGAATCAGATTTTCTGGAAAATAGGAGCCCTGATGGCCTTGACTTTGATGGTGAAATGAGATTAAAACTACAAGAATTGGAGAAGGCTTTGTTTTCGGATGAAGAAGAGGAGGAGGAAGACATATTTGAGACTGCCCAAATCATGGACATTGATCCTGACATGGCTGAGTGGGCCAATCCACTTCAAGGTATGCTACTTCATGACTCACCAAAGGAGTCCTCATCCTCTGATTCTTCCAATATTAGCAGCATAAGTAGCACCACCAAAGAAACTTCACAGAACTCACCCCAGACCCCCAAACAATTACTTTATGAATGTGCTAGTGCGCTTTCAGAAGGAAATGAAGAGCAAGCCCAATCTATGATAAACAATCTCAGGCAAATGGTCTCAATTCAGGGGGAACCTTCTCAAAGAATTGCAGCCTACATGGTGGAAGGGCTTGCAGCTCGCGTTGCTTCATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAAGAACCTCCTTCTTCAGATCGTCTTGCAGCTATGCAGATCCTATTTGAGATCTGCCCGTGTTTTAAATTCGGATTCATCGCTGCAAATGGTGCTATAGTTGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACACAGTACATAACTCTAATACAAGCACTTGCTTCAATGCCAGGTAGGCGACCTCATGTGAGATTAACTGGGGTGGATGATCCTGAGACTGTGCAGCGCTCTGTTGGTGGCATGAACATCATAGGAAAAAGGCTTGAAAAGCTGGCAGAGGAACTTGGATTGTCATTTGAGTTTCGAGCAGTGGCTTCAAAGACCTCAATTGTCTCACCATCAATGCTCAATTGTCGTCCGGGAGAAGCACTTGTAGTGAACTTTGCATTCCAGCTTCATCACATGCGTGATGAAACTGTATCCACAGTGAACGAGAGAGACCAACTTCTTCGCATGGTTAAGTGCTTGAATCCAAAACTTGTGACAATTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCAAAGATTTGTTGAAGCATACAATTACTACTCTGCTGTGTTTGACACTCTTGATGCAACTCTGCCTAGGGAGAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCAAAGGACATTGTCAACATTGTGGCTTGTGAGGGCGAGGATAGAATAGAACGGTACGAAGTTGCCGGAAAATGGAGGGCAAGATTGACCATGGCTGGCTTCACTCCATGTCCAATGAGCACAAATGTTAGAGAAGCAATTAGGAAACTCATAATTACACAGTACTGTGACAGGTTCAAGATAAAGGAGGAAAAGGGAGCACTTCATTTTGGGTGGGAAGACAAAAACTTAATTGTTACTTCAGCATGGAAGTGACCGACATAAATTCTTTGTTGCTTGAGACTCATTGTAGTGTTGATGTAGTATTTGTTTGTTTGTTTAGTCTGTGTATCTGTATGTTTATGTTTGGTTCAAACTCAGATGTATACTACTAACTTGCAACTTATGCTGATACAAACTTTCATGTGTCATACTGCATGCATGGATGAAGGTAAATGGGGGTAATATCACACATTAAACGA