Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01858 LG1 22100557 22103308 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, stomatal lineage progression, stomatal complex patterning, mitotic G1 phase, stomatal lineage progression, mitotic G2 phase, mitotic S phase, stomatal lineage progression, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09143 Cell growth and death   C 04218 Cellular senescence [PATH:ko04218]
SNP Position Effect Amino acid change
C/T 22100620 intron_variant
G/A 22100678 synonymous_variant p.Val12Val
C/T 22100797 missense_variant p.Thr52Ile
A/T 22100875 missense_variant p.Asn78Ile
C/A 22100996 synonymous_variant p.Ala118Ala
C/A 22101086 intron_variant
T/G 22101103 intron_variant
T/A 22101127 intron_variant
A/G 22101146 intron_variant
T/A 22101199 intron_variant
A/T 22101200 intron_variant
T/A 22101301 intron_variant
T/C 22101456 intron_variant
G/A 22101560 missense_variant p.Arg153His
C/A 22101671 missense_variant p.Thr190Asn
C/G 22101677 missense_variant p.Thr192Ser
C/G 22101718 missense_variant p.His206Asp
T/C 22101752 missense_variant p.Ile217Thr
C/T 22101755 missense_variant p.Pro218Leu
G/A 22101770 missense_variant p.Ser223Asn
G/C 22101775 missense_variant p.Glu225Gln
T/C,* 22101779 missense_variant p.Leu226Ser
C/T 22101844 missense_variant p.Leu248Phe
C/T 22102150 missense_variant p.Pro292Ser
C/G 22102275 intron_variant
G/A 22102315 intron_variant
A/G 22102325 splice_acceptor_variant&intron_variant
G/T 22102451 intron_variant
A/G 22102456 intron_variant
G/C 22102478 intron_variant
C/A 22102736 intron_variant
T/C 22102745 intron_variant
T/C 22102826 synonymous_variant p.Ser378Ser
C/T 22102832 synonymous_variant p.Ala380Ala
A/C 22102883 intron_variant
T/A 22102942 intron_variant
C/T 22103070 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01858.1
MQSTQESQSENGEAPGYYWKSNFHQPLLETFIIDTRKVFDANIDANTQHYEDNLSMYKYLADPGDIDQMYFADEDVEQQSTVAAETSLSYPTQSNILNTGTKDGLGDKESLPLSEDSSQVHQQIPVYSDVEKRYSHDPLLPQAAMKYHEVGRRRLQFEEGASSAIGSNNSHEKLNATSNNVKRIELVESVTSTVYPQQGCGNLPLPHNSPGMNMKRSIPSSNVSGELSVEARIDSHELDATGAGNPEELNKSPSPGKKKKKTSVPANQGGCRRCNCKKSKCIKLYCECFNAGTYCVGTCGCEDCLNRPQYEGIILECRRQIESRNQIRLINITGTFCKTQKRLQMQKIYMSEKVLRMLSDYVSSQHSSSTAMVASETDYDLRPLIPTAPPLQCSDKGKEAAKSRVISGNYLSMCFHLVQRTLNLLKMSTAAVISGKLFLLPDSHHLPRTVE*


CDS Sequence:
>Vu_01858.1
ATGCAAAGCACACAAGAATCTCAAAGTGAAAATGGTGAAGCTCCTGGATATTACTGGAAATCAAATTTTCATCAGCCACTGCTAGAGACGTTTATAATTGACACTCGAAAGGTTTTTGACGCCAACATTGACGCGAATACGCAACACTATGAAGACAATTTGTCTATGTATAAATATTTGGCTGATCCAGGGGATATTGATCAAATGTATTTTGCTGACGAAGATGTAGAACAACAATCTACAGTTGCAGCTGAAACATCACTTAGTTACCCAACTCAGTCAAACATATTAAACACTGGCACGAAAGATGGTCTTGGTGATAAAGAATCTTTGCCTCTATCAGAGGATTCTAGCCAGGTTCATCAACAGATACCAGTATACAGTGATGTTGAGAAACGATATAGTCATGATCCACTACTTCCTCAGGCCGCTATGAAGTACCATGAAGTTGGAAGACGCCGCCTACAATTTGAGGAAGGTGCTTCCAGTGCTATTGGAAGTAACAATTCCCATGAAAAACTGAATGCAACATCAAACAACGTGAAAAGGATCGAGCTGGTTGAGTCTGTTACTTCCACCGTGTATCCTCAGCAAGGTTGTGGAAACTTACCTTTACCACATAATTCACCAGGGATGAACATGAAGAGATCCATACCTTCGTCTAATGTCAGTGGGGAATTATCGGTTGAAGCTAGAATTGATAGTCATGAACTTGATGCTACGGGTGCTGGAAACCCCGAGGAACTCAACAAATCGCCTAGCCCCGGCAAGAAAAAGAAGAAAACATCAGTCCCTGCTAATCAAGGTGGCTGTAGACGGTGCAACTGTAAGAAGAGTAAATGTATAAAACTTTACTGTGAGTGTTTTAATGCTGGAACCTACTGCGTTGGCACGTGTGGTTGCGAAGACTGCTTAAACAGACCACAATATGAAGGGATCATCTTGGAGTGTAGACGACAAATTGAATCCCGCAATCAGATTCGTCTTATAAATATAACAGGAACATTCTGCAAGACACAAAAGAGGTTGCAAATGCAAAAGATCTACATGTCTGAAAAAGTATTGCGAATGTTATCAGATTATGTTTCATCTCAACATTCTTCGAGTACAGCAATGGTGGCAAGCGAGACAGATTATGATCTACGGCCACTCATTCCTACAGCGCCACCATTGCAATGCTCTGACAAAGGCAAGGAGGCTGCAAAATCCAGAGTTATTTCTGGAAACTATTTGTCAATGTGTTTTCATCTTGTTCAAAGAACTCTGAATCTTCTGAAGATGAGCACGGCAGCAGTAATCAGTGGAAAACTGTTTCTTCTTCCAGATTCTCACCACTTACCCCGAACAGTAGAGTAA


Promoter Sequence:
>Vu_01858::LG1:22098557-22100557(+)
AACTTTAAATTCAAACTTAGAAAAAAAAGGTTGTGAAATTTTAGAAAAGGATCTCAGTATCATGTGTAAAAATTAGAATGTAGGAATAAAGTATACAAATAAATTAATTAGAATAATAGAAGGAGGAAAAATCCCACCTTCTAAAATGAATCCTTAAATATTTTCTAAACAGAAAAACACTCAAATTTATAAACAAATACATTTTTTTTGTAGAAATTACCCGCAATAGATAATTTCGAAAATATTTCAAATCTAATACGATAACAAATCTGTTTTTTTACTGATTTATTAAAATTCAAACGGAAAAGATTCAGTGTCTAGAATTAAAACCATATAAATATTACATTTCCTCAAAATCCTTCACCTTCTCACAACTCACAATCTTATCTTTCTAATATTTGATATCCTGTGATTGACTTTTTAAAATCATTTTACTTTTCTAGTACAGAAAATAAATACCATCTATTTTAGTCGTTATATCATTTTAATTTATTTTAGTTCTTATTCATATTATTTGTAAATTCCCTTCTGATAAGATTACAAGAAGCTAAGAACAATAGTAAGAATTGAATAAAGGTATATTTTAATTTTTAAAAAAACTTAGGTATGTATTTAGTTCTAGTAAAATAAATTATTCTTCTTTTATTTTTTATTGTTGTGTATTACTATAGCGATTATTTTTATTGACCTAAACTCACGTGATTATGAAAACGAAAAACAAATTGACCCGAATAAGTGAGAAACCCGCCCGACCCGAAAAGGCGAGAGAGCGATTTCCCGCTCCCATTTAAAACTTCGCCGTGGCAACTAACTCTTCCGCTTGCCGCTTTTCGCTCCTATCATTCGTTTCAGTGAACCGATTACAGCCTTGGATATTAATTATTAATTAAAAGCATAAAAAATAAAGAAATCAAGCAAAATCTTTATATAGTGTAGGGTTAATCGCTGCAGAACAGAAGAAGAAGAAGAAGAAGTAGAAAGTTAGTTGTTTTCATAACGATGGATTGTCCAGACCCTTCCAAGAACAACAATGGCAGTTCTTCTGACTCCGCTCTCAACAACAACAAAAATTCACCGGAATCCCTTGAAGAAGTAGATTCACTTAGTTTAACATTCACTTCGTGAAAAAAATTCGCTTTTGTTTTTCTTTTTCGGTGGTCATTTTCGTTAGAGCTTTGGAAGCCTTAAGAATTTTGGCTGTTTTTGTGTGTTTCTTTGTTTATTTGAGACAGTTAGTTTGGCGGTTCTTGGTTATTTAAGGGTTTGAGTGAATCTCGAATTGCTTTGGGTTTGGGTTGGGAGTTGTTTTTCTGCATACTGTGATGAATGAAACCTTGTTTGGTTTTTTCTTTTTTCGTTTCTTGTTTGCTGATCATATTGCATTGGAGACTAACGTTGGGTTTGGAAATCTTGGAATAAGCGAATTGAATTTATTTGGTACATGAATTACTCCGACAAGCTTGCTTGGGATGGTGCTTGTTGTATAATTTAGATGGACCTCACTCGTTTACAAGTTTAAGGTTTCGTGAATCATACAAGTTGAAGTCACAGCGACTAAAATTCAATGGCTTTGACTCTGTTTCCTAGAATTGCTGTAGTGATGGTGTTCTGCACTCTAAAAGTTTTGAAGCCACATTACATTAATGTGTAAAGTGAATTGCGGAGAGAAAGAAAAGATCATATTTTTTTTAATGGGTGTTGTATGCATTGTGTTTTACATGTTGATTTTGGTCTGACCCTGATTTTTTAACCTCTTTGAAGTGCAAAGAGATGTTTCAGACTGGTTTATTTGATTTCAATTGCTGTATCAGATAACGAATAATAAATAAATGAACAAGTCTCAACTTTTTAATTTCAGGAATCTTCTTATTTTAGATATGTAAGCTCTTTATCACCAATAAACATCAAGGCTTCACATGGCACTCGAAGTTTTATAGGGCTCAATTCTCCACCCCTTGTGTTCAAGTCTCCAAGTATTAGTCACCGTCAAAGACAGTTCA


Gene Sequence:
>Vu_01858(+)
ATGCAAAGGTTTCTTTTGTGACTTCAATTGTGTGTACCTGTTTGTTTATTGACAATGCACTTGCTGTTTGCTTACTAAATTTGTTCATACCAGCACACAAGAATCTCAAAGTGAAAATGGTGAAGCTCCTGGATATTACTGGAAATCAAATTTTCATCAGCCACTGCTAGAGACGTTTATAATTGACACTCGAAAGGTTTTTGACGCCAACATTGACGCGAATACGCAACACTATGAAGACAATTTGTCTATGTATAAATATTTGGCTGATCCAGGGGATATTGATCAAATGTATTTTGCTGACGAAGATGTAGAACAACAATCTACAGTTGCAGCTGAAACATCACTTAGTTACCCAACTCAGTCAAACATATTAAACACTGGCACGAAAGATGGTCTTGGTGATAAAGAATCTTTGCCTCTATCAGAGGATTCTAGCCAGGTTCATCAACAGATACCAGTATACAGTGATGTTGAGAAACGATATAGTCATGATCCACTACTTCCTCAGGTGAACAACGGGTTCCTGCTGTCTGTATATATAATTTTAACATATATCACATCATTTGATGATCAGTGTTACTTAGATATTTCTAATTCCTTGAAGGATTCACATACTTTTAAGTTCTGCTCGTAGAAAATTATTGATTGGATCATGAAAATTGTACACTTCAGTGGATGCCTGATCCTGTGCAGGATCTTAAAGGATGTGAAGTTTTTCACAATTAGATGGTGCTGACCTCATTTATAACTGCAGAGAACATCTTGCAAGATGGCTCTGATATAATCAAACTTGTTTTCTATTTCGTTGTAGTCCTTTGGAGTTGGGTTAACATTTAGTTGGATTTTGTTGTTCTTTCGTAGGATAAAGAGTTATAGTTAGGTTGTCTTGTCTGGAATTTACATTGTTTTTCGAGTCTATGAAGATTTTCTCGTGATATATAATAATTATTACTACAATCACTGTAGGCCGCTATGAAGTACCATGAAGTTGGAAGACGCCGCCTACAATTTGAGGAAGGTGCTTCCAGTGCTATTGGAAGTAACAATTCCCATGAAAAACTGAATGCAACATCAAACAACGTGAAAAGGATCGAGCTGGTTGAGTCTGTTACTTCCACCGTGTATCCTCAGCAAGGTTGTGGAAACTTACCTTTACCACATAATTCACCAGGGATGAACATGAAGAGATCCATACCTTCGTCTAATGTCAGTGGGGAATTATCGGTTGAAGCTAGAATTGATAGTCATGAACTTGATGCTACGGGTGCTGGAAACCCCGAGGAACTCAACAAATCGCCTAGCCCCGGCAAGAAAAAGTCAGCTTTTGTGATCTTATCTTATAATAATTCACGATTTCTACTCTTTATATGCTTAGTTGCATTACCAAATATTGCATTTTTCTTCAGGAAGAAAACATCAGTCCCTGCTAATCAAGGTGGCTGTAGACGGTGCAACTGTAAGAAGAGTAAATGTATAAAACTGTAAGTGAATCTGTGTATGTTTTGGTATCTCATTTTATATGATATAACACAGTATATGTCTTTTTTATTTGAGCACATTGCAGTTACTGTGAGTGTTTTAATGCTGGAACCTACTGCGTTGGCACGTGTGGTTGCGAAGACTGCTTAAACAGACCACAATATGAAGGGATCATCTTGGAGTGTAGACGACAAATTGAATCCCGCAATCAGGTACCATTTGTGTCAAAGAATGTACCGTTTGCCACTGATATCTGATTTTTTCTTTACCGAAAATGAATCGATAGATTCGTCTTATAAATATAACAGGAACATTCTGCAAGACACAAAAGAGGTTGCAAATGCAAAAGATCTACATGTCTGAAAAAGTATTGCGAATGTTATCAGGTTGTGTGTTATGTCAATTTCCTCATGCTCAACATTTTCACCCCTTTAATCTCGTGTATCTGCTAATATCACCATTTTCTTTCTAATATTTGAAAAAGGCTAAAGTTGGATGCTCTAGTGGATGTGGATGTCAGGGTTGTAAGAATTCCTATGGCAAGAAAGAAGGCAAGAGTTTTATATTATGAATAGCTATTGTAAATTATTGATGCACCAACGAATTTTATGTACTTGTCTGATAAGAGTCATATGAAATGAATGTTGGAAGGTCTTGCTGTTAAGTAACACTCTTCCTGAATGTTGTTAATGTAATACACATTTTCTTTTTTTTCTTAATTCAGATTATGTTTCATCTCAACATTCTTCGAGTACAGCAATGGTGGCAAGCGAGACAGATTATGATCTACGGCCACTCATTCCTACAGCGCCACCATTGCAATGCTCTGAGTAAGATGGTTTTCACTGTAAATTCTCCAACATCAATACTTCTACACTAATATATAGAGGTAACAATTTCCTGTTTTTGGTGTACACATGCTAGTATTTTTTTCTTAAGAAAAAAGTGAAAATGGTGTCACACAATATATAAATATAATTATAGAATATAGATAACATTTTTTTTTATTATCTGACAGAAATGCTGACACACGGTCGTTTCCAATGGTTTGATGATATAAAGAAAATTATGGAAATTGAGCTTTATACATTTGTGCAGCAAAGGCAAGGAGGCTGCAAAATCCAGAGTTATTTCTGGAAACTATTTGTCAATGTGTTTTCATCTTGTTCAAAGAACTCTGAATCTTCTGAAGATGAGCACGGCAGCAGTAATCAGTGGAAAACTGTTTCTTCTTCCAGATTCTCACCACTTACCCCGAACAGTAGAGTAA