Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01798 LG1 21269345 21270280 PREDICTED: protein PPLZ02-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, ethylene-activated signaling pathway
Cellular Component   located in   intracellular anatomical structure, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding
SNP Position Effect Amino acid change
G/T 21269455 missense_variant p.Phe163Leu
C/T 21269642 missense_variant p.Arg101Lys
T/G 21269684 missense_variant p.Asn87Thr
T/C 21269729 missense_variant p.His72Arg
T/C 21269837 missense_variant p.His36Arg
A/T 21269873 intron_variant
C/A 21269892 intron_variant
T/C 21269974 intron_variant
T/C 21269992 intron_variant
T/A 21270042 intron_variant
A/C 21270068 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01798.1
MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSGSERKPSVPNATPASQPKSLTVKSEQTHQVLPHKREEEDQDSEANRDVKMARNVESLPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSPQAL*


CDS Sequence:
>Vu_01798.1
ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCGAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCGGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCAGGGTCTGAGAGAAAACCTTCAGTGCCAAATGCCACTCCCGCATCCCAACCAAAGAGTCTGACTGTGAAGAGTGAGCAAACTCATCAAGTGTTGCCACACAAGAGAGAAGAGGAGGATCAAGACTCAGAGGCCAACAGGGATGTTAAAATGGCCAGAAATGTTGAAAGTCTTCCTCTGCAGTTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCTTCTGTCTTTTCACCCCAGGCCCTTTAA


Promoter Sequence:
>Vu_01798::LG1:21270280-21272280(-)
TTTTAAGTTAAAAATAATACTAATCTATTATATAAATTAAAATTATGTCTCATTATTGATGAGTTACACAAGATTTATGTGTATGGCTAATTTTGGATTGGAGATCATTCAGTTAAAAATATCAAAAAAATAATCATAATGATCATTCTTGAAACCGAATAGTTCTAATATATCGATTGAACGGTCGTCCTTAAAAATGATCAGATCGCTGATGATTAATGTATGACAAAATATAACTAGTATCAATTGAGTCATGATTAGACCGTTAATAATTCAAAAATTATTTTAAAATTTATAAATACAAGTTTAAGGTAAATAGATATGTAATTATATTTATCATACACTAATTGATAAAATAATAAAATCTTTATTACATCGAAATACTTATTGCAATAATCGTTCAACTTAACCTTCAAAACAAACAATAACGAAGAGAGATATTTAAATACTCAAAACATAATGAACAAATAACTTCGATCCCATATACGAAAAAAAAAACACTTTCTAAAGTGTATGTTTAATTTATACGAAAACTAATTTCATTTTGTTCTCTCATAAAGTGTTGTGGATAATGTTTTGAAACATACCTTAAAAAAAAAAGGTTTTGTGAGTTAAAATAGCAGTAGTTCCATAACAGTAGCCATACTCTTACCTCCATAAGTAGCTTACATCATCATATTGCTCCATCCCCACCCTAATAAAGAACAGAGGAAAGGGTTGTGTTGTTGTGATGGGTTTTTGAAGTGAGAATAGTGACAAAAACTTGATTAAATAATTTGACATGTTAGGGTAATTATGATGGTCAAAGAATCTTTCATTTTATCCCAAGAAGAGTGTTGTTGCAACTTGGGTGGGATTGACCCAATCATAAAATAAACATTTTCATAAGTGATCACATGTATATCCATAAAATCCAATGGTAAAAGATATTATTGATATCTATTGCACATGTGTTACTACGGATCACTCCAACATTTTGCAACGTATCATCGTTATCTTGCTCTCCAATTGTTCCTGTCCATGGTATAATGCAGAACCTCCTATTAAAGTGCTTCTTCTTTTATTTCTAAGCCAATATCTCTCTTTTTGTGCATATTTCATATTATGTTGGTCAAAGATATTTTAATTCAAACTTTACCTCTTAAGAAACTTCACATCCGTCATCATCCAATATTTGTTCCCCACACTCACATGAGGACAATCTACCATTCTAATTTTTATTCTTAAAGCAGTCATTAACAAAAACAAAGCTACATGGTCCTGCACAATAGATGCATATCTGTGTTCATGACTAAAAAAAGAAATAAGTAGTCAGACACAAGAACAATAACGTATCGAAATAAAGAAGAGTCAAATGTATTTGTAATATTACTCGAAATTTCTGTTCTAAAATTTAATTTTTTAATTTTAAATTAAAATTTAAACTATTCAAATATTAACTTAAAAATGTCCTTTCGACATGTTAAAAACCTTAACATATTTATATTAAAATAATTATATTTATATATTTTTAAAATTTGAAATAAAGAAAAATTTTAATTTTATATAAAAATTTAAGATATAAAATATATTTAATGTAATAAGATAAGGTAGTATCGATTGAAAGTTTTATTGAATAAAAATGATATTAGAGAAAAAAAATTTAATTCGATTCTTAAATTTAAAATTTTAGAGATAATTTGAGATGTTATACGAAGAAGTATTGATGTTTTGAAGTGGTAAATCTGATAGGTGTATTCCTACCAAAACCTGATGAATAGTTATGCCGTAATCATGGCTCGCAAATTGCAGAAGATGGCCAAGTTACAGCTGATAGGAAAAGAATAAGAAAATCCCTGTGGGGCCAGATTGTTGAGCAGAGAAAACAGTGGCATGTAACATTTCCCTCACTACAAAAGCTCCCATTCTCTCCCATTTCTCCTTCAGTCGGTACCACTCCAAACATTTTCCACAAAAACACTTTCTCAAAAAGAACAACAATCCATTTTTCTTTCCCCAAC


Gene Sequence:
>Vu_01798(-)
ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGTAAGTTTCCACCATTTTCCCATGCAAGTCACCAATTATAAACCACTCACATTTTCAAAATCTTTCACATGCCACTCAAAGAGTCTGATTGATGCCTTTAAGATTCATGTCTTTTTGCTCGAAAGGATATTATTGTAATGTCATGTGATTCATGTAACTGATAGGAAAAGGTTTTCTCACTGTTGTTGTTTGAAAGAATCAAGCCAAATATGTAATGCTGAAAATTTGATTTTTAAGTTGAGTGAATGAGTAAGAGGTTGAGATGGGAAAAGGGTTTTGTTTTGGTGTTGTTTAAACGAACGAGAGGGATAAAAATGATTGATTTGGTTTGTGCAGGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCGAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCGGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCAGGGTCTGAGAGAAAACCTTCAGTGCCAAATGCCACTCCCGCATCCCAACCAAAGAGTCTGACTGTGAAGAGTGAGCAAACTCATCAAGTGTTGCCACACAAGAGAGAAGAGGAGGATCAAGACTCAGAGGCCAACAGGGATGTTAAAATGGCCAGAAATGTTGAAAGTCTTCCTCTGCAGTTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCTTCTGTCTTTTCACCCCAGGCCCTTTAA