Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01770 LG1 20936938 20939130 serine/threonine-protein kinase RIPK isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to bacterium, protein phosphorylation, protein phosphorylation, defense response to bacterium, defense response to bacterium, protein phosphorylation
Cellular Component   located in   mitochondrion, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding
SNP Position Effect Amino acid change
T/G,* 20937094 upstream_gene_variant
T/C,* 20937110 upstream_gene_variant
T/C,* 20937114 upstream_gene_variant
T/C,* 20937118 upstream_gene_variant
T/G 20937136 upstream_gene_variant
T/G 20937138 upstream_gene_variant
A/G 20937143 upstream_gene_variant
T/C 20937158 upstream_gene_variant
C/A 20937309 missense_variant p.Gly353Cys
C/T 20937314 stop_retained_variant p.Ter351Ter
C/A 20937363 missense_variant p.Gly335Cys
C/G 20937471 missense_variant p.Gly299Arg
T/G,C 20937642 intron_variant
G/A 20937748 intron_variant
A/T 20937824 intron_variant
G/T 20937990 synonymous_variant p.Leu226Leu
T/G 20938081 intron_variant
G/T 20938307 intron_variant
G/A 20938340 intron_variant
C/T 20938424 intron_variant
A/G 20938431 intron_variant
G/C 20938443 intron_variant
T/C 20938698 intron_variant
A/G 20938699 intron_variant
T/C 20938703 intron_variant
A/T 20938801 synonymous_variant p.Ala110Ala
T/A 20938900 synonymous_variant p.Ala77Ala
C/A 20938907 missense_variant p.Arg75Met
T/A 20938976 missense_variant p.Gln52Leu
G/A 20938977 stop_gained p.Gln52*
T/C 20939026 synonymous_variant p.Gly35Gly
A/T 20939093 stop_gained p.Leu13*
G/T 20939124 missense_variant p.Pro3Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01770.1
MSPKRNTWKSVILILGCYKVKCPLEESEKQVLKQGSFQRLCLSDVSNSSSTQAIEDLSISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDEHRLLMYEYMPRGSLENQLFRKYSAAMPWSTRMKIALGAAKGLVFLHESDKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNGGKSLVEWARPLLRDQKKLYSIIDCRLEGQFPMKGAMKVAMLAFKCLSPHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENDGTVWSSQSRKGRQVVVSDVTVARNRELQQNDD*


CDS Sequence:
>Vu_01770.1
ATGAGTCCTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGATCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGGTCCAAACTTTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGACTGTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCAAACATTTTACTAGACTCGGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGCATAATGGGAACACAAGGATATGCTGCTCCTGAGTACATAATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGGAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAACTTTATAGCATCATAGATTGTAGACTAGAAGGACAATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTGTTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGACGGCACGGTTTGGTCGTCACAATCAAGAAAGGGGAGGCAAGTAGTTGTATCAGATGTGACTGTGGCCAGAAACAGAGAGCTGCAGCAAAATGATGATTAG


Promoter Sequence:
>Vu_01770::LG1:20939130-20941130(-)
GATGTAGTAAAGGATTAAACCTTAAACATAATATTAATATTAATGTGGTGAGGAGGCGTTATAGTTATTCTGTTTTTTAATTTTGCAATCAACTCATGTGTTATACATTTTTTAATTTTTTTTTTAGGATTAGATTGAGTTGAGATTTTTAACTTAATCATAAAATAAGTTCCATCCAACTTGATTTTGATTTTTTGGCAATTTGTGTTAGGTTAATCTATGTTGACACGCGGGACGTGTGATCCATTCATGGTGGTCCAAAATTAAATTCATACAACATCTAACCCTGCTTAGTCAGATTTATTAAACTAGTATTTAATTTATTATTTTATATATAATGTAATATTAAAAATGTTTATAGAAAACAATATGAAATTATATTTAATCACTATCAGCATGACAGTGATTTAACAGATTCAGACTCCCAACCAAAATCTTCGGTTCATTGAAGAAAAAAACTTTCACTACTTCAATGACCAATACAATATAAAAAATAAAATTGCAACTTTAAGATTGTTTTATAAATACAATTATTTCGTTTTACATTTAATAACCTAAAAATAAGTTATACATGTTATTTTACACTTATATTATATTGATAAATAAGAATTCTCCAATTTCGTACTTTAAAAACTGACGGTAAAAATATGTCACTCTACAAAAAATTATCCCAAGGAGAGCATCGTCAACATAAAGTTTGATAGAAACATGTAAAAATTAAAATACCCCTTAACACAATATTATTGTAGCAGCCCCACTACCTTTTTCTTTCCAACTTTTTATATGAAACCAATTTGTACTTCTTAATATAAAAACTTTGAAACTTGAAAGGGCAATGCAATTGTCAAACCCTAATTAAATGAGCACCCTTTTAAGCCATTGAATGAATTCCATTTTCCAAATGATCACTTCTTGTTTTGCAACATTTTCAATGATCGATGGAAGTGGTTGTGGGGGTTAGCTTAATTGGTTCACCCTTTCTCTTTGACCTTCCAAACCTTCATTTTTTTCCCACCGTCTTTAAATTTTAAATTTTCTTTCAAAACACTTGGATTCAATACATCCAAACCCTCCTCAAAGTCCTTCGATCTGTTGACTCTCAAACGTTTCATGCCTTAATTACAATTCTACGATGAATCCAAAGTAAGATAACAATAAATATATGAATAATGTAAAAGAAAACCCTTAAGTTGTAAGCTTCTAGAAACTGCCCTTGATGATCACATATAGAATTTAAAACAATAGGTTCATTGTCGGGTTGCTATTGTGTGATCATGACATCCTAACAACAACAACAACAACGTAGAGAGCCTTACCTACCAAATACGGGAACATATCAAATAAAACCATAAAAAAATCTCAAAATCCTTAAACCATTTTTCTTTTCTTATAATAATTCACGTGTCCTCAACACAACCCATGAACGATTAAACAAAACCTTTTTGAAGTGTGCAACAACAGATTACAATGGAATTATTGGTTTGACACTAATGGAATTTAGTTATATCTCTTCGTTTCTCCGATCTTCTCGGCGAATGTGCATCACTTGCTGAGCACAAAAATATGTGGACGGCAACGATCATGTTTGATGAAGTCTTTCCATACTTTGGAGAAACAAATTAAATTCACTTTTTCATAACATTACTTTCGTTTTTGTAAGTGTTTGTGAAAAATATATTAGTGTTAGATTGAAGTCAATAATAGGTAGGCATGTTGATTGACCTAAAAATAAAATAGAAATCCTTCGTGTATATCGTGTAGTATTGCTGTAGCATCCACATTCATGAGTTCTAGAAGACAAGGAATCTCCCACAAATTTTCTCTAGGTGGTAGGTGAAAATTTTCTACTTATAAAATTCCTCAACTCTCACTTATTTTTTCCCTTGCAGCATCAATCATTCCAAAAAATTTATGTTGTCTTTCTCATATTATTAGAATCAGAAGTAGCTTGTGAAAGAAAGTTACAGAGCAGGGTTGTTGCAGTTTCACACACAGACCAA


Gene Sequence:
>Vu_01770(-)
ATGAGTCCTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGATCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCAATTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGGTCCAAACTTTATGCATTCACACTTGAGGAGCTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGTTAGTTAGCTTTCTCAAGTGCCATTTTTAACTTTTCATGATAATAAACTGTTGTTTTGATCATAATTTCTTTTCTAGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACACAGACTGTTGATGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGTATGTTTCTTTTCTCTCTTCTTATTGTGTATTTCTGATTATATCACAAGTATCTCATAAGTCAACCATGATTGTAAGATCAACCTCAATAATTATCATCAAGTGATTTAGAACTTTACATGTTCTGTTCTGTTTTATATGGTCATGCACGCATAATTGTTTCAAATCTATATGTTCTCTTGGATGCTAATGACAAATGGACAATCCCTCTTACTGATACAAAAAAAAATCGAATTCTTACATAAACTAACAGTTTCTTTTGCTGTGATACAAACAGAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCAAACATTTTACTAGACTCGGTATGTTCTGTGATCTCATGTTGCATCTCTTAATTGCTCGATCGTCTTAATTTCCATACCAAGAAATTAACTTATACTCTTTTACTTTTTTCCTTACAAATCTAGGATTTCACAGCTAAACTCTCAGACTTTGGTCTAGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGCATAATGGGAACACAAGGATATGCTGCTCCTGAGTACATAATGACAGGTATATGCACTAACATACAAAACGTTAACCAAGTTTCTTTCATGAATTGACATCCAAAATTTGAAGGGGAAAAGGTAGACTATTTCATTCCTTACTCCCAAAAGCATGTTACAAGCCTCAATAAGAATTTCAGCACCGTAACATATTACTATAACTTACTCCCTTTATGCTGTCACTTTCATCAAACGTAAAATTCACAGCATCAGAACTTTCAACTAAACAGGCTATATTTTCTTAAGTCAAAAAAGACAGAAACTTATATTTGATGAAGGTAACTAATGAGTCATTGCCTTGTCACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTGGTGCTGTTGGAATTGCTTACAGGAAGACGAGTAGTGGATAAGTCTCGGTCGAATGGTGGGAAGAGCTTAGTGGAATGGGCAAGGCCTTTGCTGAGAGATCAGAAAAAACTTTATAGCATCATAGATTGTAGACTAGAAGGACAATTTCCCATGAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTGTTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGGTAACAAACATAAAATATAGCAGCTGATAGCACTCCTCAGCAAAGTAGATATAATATATATATGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAGATAGAAAAAAGGTAAAAAGAAAAAAAATGGTGTTATTTTATTTTACAAGACGGCACGGTTTGGTCGTCACAATCAAGAAAGGGGAGGCAAGTAGTTGTATCAGATGTGACTGTGGCCAGAAACAGAGAGCTGCAGCAAAATGATGATTAG