Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01743 LG1 20567174 20568466 receptor-like protein kinase 5
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 20567174 stop_lost&splice_region_variant p.Ter393Cysext*?
C/T 20567189 synonymous_variant p.Leu388Leu
T/C 20567201 missense_variant p.Ile384Met
C/T 20567206 missense_variant p.Asp383Asn
C/G 20567208 missense_variant p.Gly382Ala
C/T 20567212 missense_variant p.Asp381Asn
T/A 20567213 synonymous_variant p.Ile380Ile
T/A 20567219 missense_variant p.Lys378Asn
G/A 20567222 synonymous_variant p.Gly377Gly
C/T 20567223 missense_variant p.Gly377Asp
A/T 20567225 missense_variant p.His376Gln
G/A,T 20567227 missense_variant p.His376Tyr
T/C 20567228 synonymous_variant p.Val375Val
C/A,T 20567230 missense_variant p.Val375Leu
T/A,C 20567232 missense_variant p.Gln374Leu
G/C 20567234 synonymous_variant p.Val373Val
T/C 20567237 synonymous_variant p.Glu372Glu
C/G 20567239 missense_variant p.Glu372Gln
C/G 20567242 missense_variant p.Ala371Pro
A/G 20567264 synonymous_variant p.Phe363Phe
C/T,G 20567272 missense_variant p.Asp361His
A/G 20567275 missense_variant p.Ser360Pro
C/T,* 20567292 missense_variant p.Gly354Glu
A/G,* 20567294 synonymous_variant p.Val353Val
C/A,* 20567296 missense_variant p.Val353Phe
G/A 20567301 missense_variant p.Ala351Val
C/A,T 20567302 missense_variant p.Ala351Ser
G/C,A 20567307 missense_variant p.Thr349Ile
C/T 20567314 missense_variant p.Val347Ile
C/T 20567330 synonymous_variant p.Leu341Leu
T/C 20567336 synonymous_variant p.Ala339Ala
G/A 20567337 missense_variant p.Ala339Val
G/A 20567344 missense_variant p.Leu337Phe
G/A 20567348 synonymous_variant p.Pro335Pro
C/T 20567361 missense_variant p.Gly331Glu
C/T 20567362 missense_variant p.Gly331Arg
A/G,* 20567367 missense_variant p.Val329Ala
G/C,* 20567377 splice_region_variant&intron_variant
A/G 20567379 splice_region_variant&intron_variant
T/G 20567381 splice_region_variant&intron_variant
A/G 20567387 intron_variant
A/G 20567394 intron_variant
G/A 20567403 intron_variant
A/T 20567443 intron_variant
T/C 20567444 intron_variant
T/A 20567471 intron_variant
C/G 20567484 splice_region_variant&intron_variant
T/A 20567492 synonymous_variant p.Gly325Gly
A/C 20567513 synonymous_variant p.Val318Val
A/G 20567520 missense_variant p.Leu316Ser
C/G,T 20567524 missense_variant p.Val315Leu
C/A 20567545 stop_gained p.Gly308*
G/A 20567553 missense_variant p.Thr305Ile
A/T 20567555 synonymous_variant p.Pro304Pro
A/T 20567567 synonymous_variant p.Ser300Ser
T/G 20567580 missense_variant p.Glu296Ala
C/T 20567581 missense_variant p.Glu296Lys
T/G 20567583 missense_variant p.Glu295Ala
C/A 20567584 stop_gained p.Glu295*
A/C 20567588 missense_variant p.Asp293Glu
T/A 20567589 missense_variant p.Asp293Val
C/T 20567590 missense_variant p.Asp293Asn
A/G 20567591 synonymous_variant p.Leu292Leu
G/T 20567595 missense_variant p.Thr291Asn
T/C 20567598 missense_variant p.Lys290Arg
T/C 20567608 missense_variant p.Lys287Glu
A/T 20567618 missense_variant p.Phe283Leu
C/T 20567626 missense_variant p.Asp281Asn
C/A 20567641 missense_variant p.Asp276Tyr
G/T 20567652 missense_variant p.Thr272Asn
T/C 20567653 missense_variant p.Thr272Ala
G/T 20567655 missense_variant p.Pro271Gln
G/C 20567656 missense_variant p.Pro271Ala
C/A 20567662 missense_variant p.Val269Phe
T/C 20567667 missense_variant p.Asp267Gly
C/T 20567668 missense_variant p.Asp267Asn
C/T 20567671 missense_variant p.Glu266Lys
C/A 20567672 synonymous_variant p.Leu265Leu
C/A 20567696 missense_variant p.Lys257Asn
G/A 20567704 synonymous_variant p.Leu255Leu
G/T 20567707 missense_variant p.His254Asn
C/T 20567713 missense_variant p.Val252Ile
G/T 20567718 missense_variant p.Ser250Tyr
T/C 20567721 missense_variant p.Asn249Ser
T/A 20567722 missense_variant p.Asn249Tyr
T/G 20567723 synonymous_variant p.Ser248Ser
G/T 20567724 stop_gained p.Ser248*
C/G 20567727 missense_variant p.Ser247Thr
A/G 20567731 missense_variant p.Phe246Leu
G/C 20567734 missense_variant p.His245Asp
A/T 20567740 missense_variant p.Ser243Thr
T/C 20567746 missense_variant p.Ile241Val
T/G 20567783 synonymous_variant p.Ser228Ser
T/C 20567788 missense_variant p.Lys227Glu
T/C,A 20567799 missense_variant p.Tyr223Phe
A/C,G 20567800 missense_variant p.Tyr223Asp
T/A 20567801 synonymous_variant p.Ser222Ser
A/C 20567807 stop_gained p.Tyr220*
A/T,C 20567809 missense_variant p.Tyr220Asp
T/A 20567814 missense_variant p.Asp218Val
T/C 20567816 synonymous_variant p.Gln217Gln
G/A 20567826 missense_variant p.Thr214Ile
G/C 20567835 missense_variant p.Ala211Gly
C/T 20567836 missense_variant p.Ala211Thr
G/T 20567862 missense_variant p.Thr202Lys
C/T 20567867 synonymous_variant p.Gln200Gln
T/A 20567868 missense_variant p.Gln200Leu
G/T 20567869 missense_variant p.Gln200Lys
T/G 20567874 missense_variant p.Asn198Thr
T/C 20567875 missense_variant p.Asn198Asp
C/G,A 20567878 missense_variant p.Gly197Cys
A/*,T 20567881 missense_variant p.Leu196Met
C/T,* 20567883 missense_variant p.Ser195Asn
A/C,T 20567890 missense_variant p.Phe193Val
G/T 20567919 stop_gained p.Ser183*
A/G 20567920 missense_variant p.Ser183Pro
T/C 20567936 synonymous_variant p.Lys177Lys
A/T 20567961 missense_variant p.Ile169Asn
G/T 20567965 missense_variant p.Leu168Ile
G/C 20568008 missense_variant p.Ile153Met
A/G 20568023 synonymous_variant p.Asn148Asn
T/A 20568026 missense_variant p.Leu147Phe
A/G 20568028 synonymous_variant p.Leu147Leu
A/G 20568043 missense_variant p.Tyr142His
A/C 20568071 synonymous_variant p.Arg132Arg
G/T 20568073 missense_variant p.Arg132Ser
T/A 20568085 missense_variant p.Ile128Leu
T/G 20568095 missense_variant p.Gln124His
T/A 20568114 missense_variant p.Gln118Leu
C/T 20568131 synonymous_variant p.Ala112Ala
C/T 20568133 missense_variant p.Ala112Thr
G/C 20568150 missense_variant p.Thr106Arg
G/C 20568152 missense_variant p.Phe105Leu
A/C 20568158 synonymous_variant p.Leu103Leu
T/A 20568167 missense_variant p.Leu100Phe
T/C 20568175 missense_variant p.Lys98Glu
A/T 20568177 stop_gained p.Leu97*
A/T 20568183 missense_variant p.Val95Glu
G/A 20568202 missense_variant p.His89Tyr
A/G 20568218 synonymous_variant p.Cys83Cys
A/G 20568225 missense_variant p.Leu81Ser
C/T 20568231 missense_variant p.Gly79Asp
C/T 20568241 missense_variant p.Asp76Asn
C/A 20568249 missense_variant p.Ser73Ile
T/G 20568256 missense_variant p.Ile71Leu
A/T 20568280 missense_variant p.Ser63Thr
C/G 20568286 missense_variant p.Gly61Arg
A/G 20568296 synonymous_variant p.Ser57Ser
T/G,A 20568314 synonymous_variant p.Ile51Ile
C/T 20568319 missense_variant p.Val50Ile
G/C 20568331 missense_variant p.His46Asp
A/G 20568338 synonymous_variant p.Asp43Asp
A/C 20568343 missense_variant p.Leu42Val
G/C 20568346 missense_variant p.Gln41Glu
T/C 20568349 missense_variant p.Thr40Ala
T/A 20568352 missense_variant p.Thr39Ser
G/A 20568359 synonymous_variant p.Ser36Ser
A/T 20568371 synonymous_variant p.Ser32Ser
G/T 20568412 missense_variant p.His19Asn
G/A 20568416 synonymous_variant p.Asp17Asp
A/G 20568435 missense_variant p.Ile11Thr
A/G 20568437 synonymous_variant p.Asn10Asn
T/C 20568439 missense_variant p.Asn10Asp
G/A 20568440 synonymous_variant p.Phe9Phe
G/T 20568443 missense_variant p.Ser8Arg
A/C,* 20568449 missense_variant p.Phe6Leu
A/G,C 20568453 missense_variant p.Val5Gly
G/A 20568456 missense_variant p.Thr4Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01743.1
MFNTVFCSFNIRCNQQDMHALLNFKQGVTDPSAVLSSWTTQLDCCHWKGVICSNITSRVTGISLPCSTTLITSYRDEEGKLHCLTGSIHLSLLLVELKFLDYLDFTNNDFLALQFDYQHNHNCQNLSIPTSRQCVNSSTLRYLDLSLNRNLVINNLKWLPYISSLEYLILDDNDLSKETNWLSLVTMLPSLSFLSLGNCQLTDLSLSLQYANFTALQDLYLSYNEFKSELPKWLFNLSSTIYSLHFSSNSLVGHLPKDLLNLRELEDLVMPTNNFDGPIPDWFGEFKHLKTLDLEENMFSGSIPTNLGNLSTLIVLDVASNPLTGVELVFGFSNPDLPAWLYTQRSVETLAIVGSSFEASDKFWNFVSTIAEVQVHGKLIDGDISNVLLNSH*


CDS Sequence:
>Vu_01743.1
ATGTTCAACACTGTCTTTTGCAGCTTCAATATTCGTTGCAACCAACAAGACATGCATGCTCTCTTAAACTTCAAGCAAGGAGTTACAGATCCCTCTGCTGTCCTTTCCTCATGGACCACTCAATTAGATTGTTGTCATTGGAAAGGAGTCATATGTAGCAACATCACTAGTAGAGTCACTGGAATCTCTCTCCCATGTTCTACAACTCTTATTACAAGTTACAGGGACGAAGAAGGTAAATTACATTGTCTTACAGGTTCCATTCACCTCTCCTTGTTGTTAGTGGAGTTGAAATTTTTAGATTACCTTGATTTCACAAACAATGACTTCTTAGCGTTACAATTTGATTATCAGCATAATCATAATTGTCAAAATCTATCTATACCTACTTCTCGTCAGTGTGTCAACTCTTCAACTCTTCGTTATCTTGATTTATCATTAAATCGGAATCTTGTTATCAATAACCTTAAATGGCTTCCCTACATTTCCTCACTGGAATATCTTATCCTCGATGATAATGATCTTAGCAAAGAAACTAATTGGCTTTCATTAGTGACTATGCTTCCATCACTTTCATTCCTTAGTTTGGGTAATTGTCAGCTTACAGACTTGAGTTTGTCTCTCCAGTATGCTAATTTTACTGCCCTCCAAGATCTTTATCTTTCATACAATGAATTCAAGTCAGAGTTACCTAAGTGGCTATTCAATCTTAGTTCCACTATCTATTCTTTACACTTTAGCTCAAATTCTTTAGTAGGACATCTACCTAAGGATTTGTTAAATCTTCGAGAACTGGAAGACCTGGTTATGCCAACCAATAACTTTGATGGACCCATTCCAGATTGGTTTGGTGAATTCAAACATTTAAAAACTCTTGATCTTGAAGAAAACATGTTTTCTGGATCTATTCCTACAAATTTGGGAAATCTATCAACCTTGATTGTGTTAGATGTTGCCTCAAATCCATTGACAGGAGTTGAATTAGTATTTGGGTTTTCAAATCCCGACCTTCCTGCATGGTTGTATACACAACGATCTGTTGAAACTTTAGCTATAGTTGGATCATCATTTGAGGCTTCAGACAAATTTTGGAATTTTGTATCAACAATAGCTGAAGTCCAAGTACATGGCAAATTGATAGACGGGGACATATCAAATGTGTTGTTGAATAGTCATTGA


Promoter Sequence:
>Vu_01743::LG1:20568466-20570466(-)
AGTTCTCTTACATTAAATATTCTATTTTTAACCCTTTTTTCATCTATAATATTTTTCTTTTACCTATTATCATCACCTTTTTTATGTTTGATTATGCTTTCATAGAACTAGTTCTTTGTTGTATTAATATTTTAAAATAAAATAATTTTAATGAACTATTTTTTGATTATAACATTTATATGTTGTACCGTACGGTCCGTGTACTGTACGGTCTCTCGCACCAGGCCGACAGTTAGGGTTGCTGGTGTACCATACGGTCTCTGTACCGTACGGTCTCTTACACATCCAGGTCGATCGTCCAGTGCAGACTAAACGATTCTTCTAAAGTCAACTCTCCCTGACCGAACGACTTTCTCAAGTCTGACTCCCCAAAGGTTGATATACCGTATGGTCCTCCCGATCCTGTGAACTGAACGGTTCTATCCAGGTCGACCACCCATGTCGACCGACCGACCATTCCGGGCAACCACATGGTTAGGTTACAAACAATAATAGCTCATTAAAGCCCTTAATGAAGATTAAGGCGTGATTGGGCCGTCATTAGGCCGGCAACAGGTTTCGGTCTAATTATATTGAAGACTGGGTGGATGTTAAAGACCGAACGGACAAACACTGTTTAAAGCGCTTCAGGATGAAGACCGGACGGACAAACACTGTTCAAAGCGCTTCAGGATGAAGATCGGGCGGGCTTTGTTCCAAGCGGGCGACCGTTGGGAGTTGGACGAACGTTGAAGTGGGCGGACGGTTCTTGTAGGGGACAGGAGTTGAGGCCTGGTCAGACGTAACTCGCTTTCCCTCCTTCCCCAAGCCAGATGGGGGCGTACCTGTTAAAGGTGCTCCGACGCTCAAGTCAGTAAAATGACCGAACGATTATAATAAGTGATGCAAGTAGTGCATAATGTGCAGCGTGTGCAGTCTGTCTCGAAATCATACCTGAGACTCATATTTATATGGGTTGTAATGAGCTTTTACCTGTCGTCTGCCTAATGACAACCCAATCACACCTTAATCTTCATTAGGAGCTTTAATGAGCTATTATCGTTTGTAACCAAACCATGTGGTCTGCCAGCATGGGTGGTCGGCCTGGATAGAACTGTTCGGTTCATGGAGTCGAGAAGACCATACGGTATATCAACTTTTGGAAGAGTCGAACTTGGAAGAACCGTTCAATTAAGAAGAGTCGACTTTAGGAGAATCATTTGGTCCACACTAAACAATTGACCTAGTTGTGCGAAAGACCGTACAATACAAAAGCTATAAACTACACGGTCGACCTGGATGTGTGAGAGACGGTACAGGCACCGCACGAAACAAATAATATATAGGTGAAGGGATACTCATTGCAATAACGTGGTATTTGCATAAGAATATAGTAATGCTAGTCCCAATTATTAAAACTTAAGTTACATAAAAATATATTTATAGTTAAATATATTTTAATGGTTACTTCATTTTTAATTCCTTATCTTTTTAATTTTAAAAATTATTTATTAACCCTCTGTGTAGATGTTATTAGTGAAAATTAGGAAATTACAAAAATTACAACTTATGATGTTTTTTAACCACGAAAAAAAAATAATAAAAAAAAGTTTAAAACTTATCTCTCAAGAACATCCAAAATTTCCGTTTCATTTCAAATCGCTGCACGCGTTTCTATAAATTAAATATTTTTAGTTTGAAAATATATATACCTAAATGAAATTATTAATATTAAAATATTTAGTAATATTTTAAGTAAGGAGTGAACACGATCGATGCATAATTAATCTTTGATTTGAATACGTCCTTCCTAAATGGATTCCGTAGGATAGGGGTCACATTTGGTTAAGCAGTGTTAACATCGGTTTCTCTAGTCAAGTCGTTGCAATGCAAATAACTATATTATAAATAGAGTTTCTCTCCATTAGGTTGAAGTCATCCACCCCTTCATTTCTCTTGCAATCATGAATACATCTCCCTCTCAAAATGCAATTATTTTTATATCGTTGCTATGCGGAATC


Gene Sequence:
>Vu_01743(-)
ATGTTCAACACTGTCTTTTGCAGCTTCAATATTCGTTGCAACCAACAAGACATGCATGCTCTCTTAAACTTCAAGCAAGGAGTTACAGATCCCTCTGCTGTCCTTTCCTCATGGACCACTCAATTAGATTGTTGTCATTGGAAAGGAGTCATATGTAGCAACATCACTAGTAGAGTCACTGGAATCTCTCTCCCATGTTCTACAACTCTTATTACAAGTTACAGGGACGAAGAAGGTAAATTACATTGTCTTACAGGTTCCATTCACCTCTCCTTGTTGTTAGTGGAGTTGAAATTTTTAGATTACCTTGATTTCACAAACAATGACTTCTTAGCGTTACAATTTGATTATCAGCATAATCATAATTGTCAAAATCTATCTATACCTACTTCTCGTCAGTGTGTCAACTCTTCAACTCTTCGTTATCTTGATTTATCATTAAATCGGAATCTTGTTATCAATAACCTTAAATGGCTTCCCTACATTTCCTCACTGGAATATCTTATCCTCGATGATAATGATCTTAGCAAAGAAACTAATTGGCTTTCATTAGTGACTATGCTTCCATCACTTTCATTCCTTAGTTTGGGTAATTGTCAGCTTACAGACTTGAGTTTGTCTCTCCAGTATGCTAATTTTACTGCCCTCCAAGATCTTTATCTTTCATACAATGAATTCAAGTCAGAGTTACCTAAGTGGCTATTCAATCTTAGTTCCACTATCTATTCTTTACACTTTAGCTCAAATTCTTTAGTAGGACATCTACCTAAGGATTTGTTAAATCTTCGAGAACTGGAAGACCTGGTTATGCCAACCAATAACTTTGATGGACCCATTCCAGATTGGTTTGGTGAATTCAAACATTTAAAAACTCTTGATCTTGAAGAAAACATGTTTTCTGGATCTATTCCTACAAATTTGGGAAATCTATCAACCTTGATTGTGTTAGATGTTGCCTCAAATCCATTGACAGGAGTTGTGTGTGAGAGAAATTTAGCCAAATTGTCAAAATTAAAAAGATTATATATATGCTCATATTCCACGTTAATCTTTGATTTTGACTCGGATTGGATTCCACCTTTTCAACTTCAGGAATTAGTATTTGGGTTTTCAAATCCCGACCTTCCTGCATGGTTGTATACACAACGATCTGTTGAAACTTTAGCTATAGTTGGATCATCATTTGAGGCTTCAGACAAATTTTGGAATTTTGTATCAACAATAGCTGAAGTCCAAGTACATGGCAAATTGATAGACGGGGACATATCAAATGTGTTGTTGAATAGTCATTGA