Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01742 LG1 20550862 20554140 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to fungus, defense response to fungus, defense response to fungus, signal transduction, response to oomycetes, response to oomycetes
Cellular Component   located in   extracellular region, plant-type cell wall
SNP Position Effect Amino acid change
T/A 20551061 intron_variant
A/T 20551147 intron_variant
C/A 20551154 intron_variant
A/G 20551191 intron_variant
T/C 20551237 intron_variant
T/C 20551323 intron_variant
C/T 20551327 intron_variant
A/C 20551329 intron_variant
A/C 20551335 intron_variant
T/A 20551339 intron_variant
A/T 20551355 intron_variant
T/A 20551375 intron_variant
C/T 20551394 intron_variant
G/C 20551402 intron_variant
T/A 20551915 intron_variant
T/C 20551946 intron_variant
A/C 20552009 intron_variant
A/G 20552083 intron_variant
G/A 20552089 intron_variant
C/T 20552094 intron_variant
T/C 20552109 splice_region_variant&intron_variant
T/A 20552131 stop_gained p.Arg390*
T/G 20552141 synonymous_variant p.Arg386Arg
T/C 20552144 synonymous_variant p.Gln385Gln
T/G 20552166 missense_variant p.Lys378Thr
G/A 20552168 synonymous_variant p.Ile377Ile
T/C 20552170 missense_variant p.Ile377Val
A/T 20552172 missense_variant p.Phe376Tyr
T/A 20552214 missense_variant p.Tyr362Phe
G/C 20552243 missense_variant p.His352Gln
A/T 20552263 missense_variant p.Tyr346Asn
G/A 20552293 missense_variant p.Pro336Ser
T/C 20552336 synonymous_variant p.Ser321Ser
C/T 20552428 intron_variant
C/G 20552452 intron_variant
A/G 20552453 intron_variant
C/G 20552623 intron_variant
T/G 20552626 intron_variant
A/G 20552638 intron_variant
C/T 20552644 intron_variant
A/C 20552647 intron_variant
T/A 20552660 intron_variant
G/T 20552687 intron_variant
T/C 20552776 intron_variant
G/A 20552785 intron_variant
A/T 20552788 intron_variant
A/T 20552792 intron_variant
A/G 20552793 intron_variant
T/G 20552794 intron_variant
C/T 20552823 intron_variant
T/C 20552843 intron_variant
T/C 20552849 intron_variant
G/C 20552853 intron_variant
A/G 20552858 intron_variant
T/C 20552859 intron_variant
C/T,G 20552860 intron_variant
A/G 20552880 intron_variant
A/T 20552956 intron_variant
G/A 20552966 intron_variant
C/T 20553553 missense_variant p.Met196Ile
A/T 20553554 missense_variant p.Met196Lys
C/T 20553572 missense_variant p.Arg190His
G/T,C 20553573 missense_variant p.Arg190Gly
G/T 20553582 missense_variant p.Leu187Ile
G/T,* 20553615 missense_variant p.Gln176Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01742.1
MNTSPSQNAIISVWLLCGIIFNTAFCSFNIHCNQQDMHGLLNFKQGVTDPSGVLSSWTTQLDCCHWKGVICSNITNRVIGISLLCSTTLPIYRDEEDKSHCLTGSIRLSLLLVELEFLEYLNLRNNDFLALHFDYRHNHNCHNLSIPTSPRLCVNSSTLRHLDLSLNWNLVINSLQWLPYISSLEYLNLRDNDLSMETNWLQLVTMLPSLSFLSMRACQLKDLSLSLQYANFTKLEFLSLSANEFNSELPKWLFNLSCGIYELDLSSSSLIGHLPKDLLNLRELEFLNMEDNNFDGPIPDWLGNIPDWISQGVLALQLRSNHFSGKISPQICEMSSLIVLDIAQNTISGDIPTCFGNIKTLLINNVSRHKLSFQFPSSSPGRYYFNDDSLELVTKGIFHSSKRKGVMKLRRREHGGVILTSNVSSDELNI*


CDS Sequence:
>Vu_01742.1
ATGAATACATCTCCCTCTCAAAATGCAATCATATCTGTATGGTTGCTATGCGGAATCATCTTCAACACTGCCTTTTGCAGCTTCAATATTCATTGCAACCAACAGGACATGCATGGTCTCTTAAACTTCAAGCAAGGAGTTACAGACCCCTCAGGTGTCCTTTCCTCATGGACAACTCAACTAGATTGTTGTCATTGGAAAGGAGTCATATGTAGCAACATCACTAATAGAGTCATTGGAATCTCTCTCCTATGTTCTACAACTCTTCCAATTTACAGGGACGAAGAAGATAAATCACATTGCCTTACAGGTTCCATTCGTCTCTCCTTGTTGTTAGTGGAGTTGGAATTTTTAGAATACTTGAATTTGAGAAACAATGACTTCTTAGCATTACACTTTGATTATCGGCATAACCATAATTGTCATAATCTATCTATACCTACTTCTCCTCGTTTGTGTGTCAACTCTTCAACCCTTCGTCATCTTGATTTATCACTTAACTGGAATCTTGTTATCAATAGCCTTCAATGGCTTCCCTACATTTCCTCACTGGAATATCTTAACCTCCGTGATAATGATCTTAGCATGGAAACTAATTGGCTTCAATTAGTGACTATGCTTCCATCACTTTCATTCCTCAGTATGCGTGCTTGTCAACTTAAAGACTTGAGCTTGTCTCTCCAGTATGCTAATTTTACTAAACTCGAATTTCTTAGTCTTTCTGCAAATGAATTTAACTCAGAGTTGCCTAAGTGGTTATTCAATCTTAGTTGTGGTATTTATGAGTTAGACCTTAGCTCAAGTTCTCTAATAGGACATCTACCTAAGGACTTGTTAAATCTTCGAGAACTAGAATTCCTGAACATGGAAGACAATAACTTTGATGGACCCATTCCAGATTGGTTAGGGAACATACCAGATTGGATATCTCAAGGTGTATTGGCTCTCCAATTAAGGTCCAATCATTTTAGTGGTAAAATCTCACCACAAATATGTGAAATGTCTTCCCTCATTGTGTTGGATATTGCACAAAACACTATCTCCGGTGATATACCCACTTGCTTTGGTAATATCAAAACCCTACTTATCAACAATGTCTCACGCCACAAACTTTCTTTTCAATTTCCTTCATCAAGTCCTGGTCGTTACTACTTCAACGATGACAGTCTAGAATTGGTTACTAAAGGTATTTTTCATTCATCAAAAAGGAAAGGAGTCATGAAGCTTAGGAGAAGAGAACATGGTGGTGTAATTCTTACAAGCAATGTCAGCAGTGATGAACTTAATATTTAA


Promoter Sequence:
>Vu_01742::LG1:20554140-20556140(-)
CCAAGAACACGCAACAAACTGCACCAAAACGCACCGAAAGTGATTTTTAATCGGTCCAAATGAAAGATATTTCATCACTGAACAATTTAATCGGAATAAAAGTAAGATTAAATGGTCCAAAACAGATAAAAACCAACCTGGAAATGCAAGGCGTAGAGGGAACTCTCACGGGTTCGCGTAACTCCTCGCGGGTTCGTGATTTGGTATATATGTCCTTCTTTTAAACGTCCGTTCTGGAGGGCGCCGAACATCTATAATATTATAGACGTCCGGCCCCCTCTAGAACGGACGTTCAAAAGGCTGAAGCAATCAACTCTTCAACTCCCCCGTCAGCCTTTTGAACGTCCGTTCTGGAGGGGGCCGTACGTCTATAATATTATAGACGTTCGGCCCCCTCCAGAACGGACGTTCAAAAGGCTGAAGCAATCAACTCTACAACTCCCCCCGTCAGTCTCTTGAACGTCCGTTCTGGAGGGGGCCGGACGTCTACAATATTATAGACGTCCGACCCCCTCCAGAACGGACGTTCAAGAGACTGACGGGGGGAGTTGAAGAGTTGATTGCTTCAGCCTTTTGAGCGTCCGTTCTGGATGGGGTTGGACGTCTATAATATTGTAGACGTCCGGCCCCCTCCAGAACGGACGTTCAAAAGGCTGAAGCAATCAACTCTTCAACTCCCCCGTCAGCCTTTTGAACGTCCGTTAGAGGGGCCGGACGTCTATAATATTGTAGACGTTCGTCCCCCTCCAGAACGAACGTCTCCACACTCAATTATTTACATTTATGTCAACGGTCAATTATTTACATTGGGATTTTGGTGGACCGACGTCTATTGGGTGACGTTAAAGGCCAATTCTGCACTAGTGTTCTCATAATAAGATTAAGAGTATTATTTAATTTTCTTTTTTGTGTTTTGAGATATTTTATGTGTATTTAGGAGCTTAATAAGTTCTTAAATCATTTGTCATTATAAAAATTTTAAATAATTTAAATAAGTTTTTATAACAATAAAATTTATTTATTATAAGTTTGAAATATGACTTATATATTAGAATTAATTTTTACAAATTTTCACCACAATATAAATTATATATTAAAATATTCAATTACTAAAACTTAAGTTACATAAAATTATATTTATAGTTAAATATATTTTAAGTTACTTTATTTTGGTTACTTCATTTTTAATTCCTTATCTTTTTAATTTTAAAAATTATTTATTAACCCTCTGTGTAGGTGTTATTAGTCAAAATAAGGAAATTACAAAAATTACAACTTATAATGTTTTTTAACCACGAAAACAAAAAAAAATATAAAAAGTTTAAATCTTATCTCTTAATAAGAACATAAAAAATTTCTGTTTCATTTCAAACCGTTGCACGTGTTTCTATAAATTAAATATTTTGTTTAAAAATATATATACCTAAATGAAACTATTAAATATTAAAATATTTAGTAATATTTTAAGTAAGGAGTGAACACGATCGATGCATAATTAATCTTTGATTTGAATATGTGTTTCCAAAATGGATGCCGTAGGATAGGGCTCACATTTGGTCAAGCAATGTCACGATCGGTTTCTCTAGTCACGATCTTTAACACAAAATTCTATATTTTCTTGTATAACACAATATTTCATTATATTATCAGATGGCAAACTCCAACATCGTTAAATGCAAATAACTAAATCGTAACAAATTATTTCAGTTTAATATTAAAGTTGTAAATATGGCATTACATTAAAGATTTAAAACAAAAAAGCATCTTTTATAATAATAATCTTACCCTCTGAAAGTATAATTATTTCGGATTAAAAATAATTATTATTTATTTTAAAAATGAATATTTTCATTATGCTTTTATTTTTAAGACATCTTATTAAAATTATGAAAGATATATAATAACTCTTAATCTGATAATTACTGGGTAAACCGCCCCAATTATTATAAATAGAGTTTCTCTCCATTAGATGCCATCAGCCCTTCATTTCTCTTCCAATC


Gene Sequence:
>Vu_01742(-)
ATGAATACATCTCCCTCTCAAAATGCAATCATATCTGTATGGTTGCTATGCGGAATCATCTTCAACACTGCCTTTTGCAGCTTCAATATTCATTGCAACCAACAGGACATGCATGGTCTCTTAAACTTCAAGCAAGGAGTTACAGACCCCTCAGGTGTCCTTTCCTCATGGACAACTCAACTAGATTGTTGTCATTGGAAAGGAGTCATATGTAGCAACATCACTAATAGAGTCATTGGAATCTCTCTCCTATGTTCTACAACTCTTCCAATTTACAGGGACGAAGAAGATAAATCACATTGCCTTACAGGTTCCATTCGTCTCTCCTTGTTGTTAGTGGAGTTGGAATTTTTAGAATACTTGAATTTGAGAAACAATGACTTCTTAGCATTACACTTTGATTATCGGCATAACCATAATTGTCATAATCTATCTATACCTACTTCTCCTCGTTTGTGTGTCAACTCTTCAACCCTTCGTCATCTTGATTTATCACTTAACTGGAATCTTGTTATCAATAGCCTTCAATGGCTTCCCTACATTTCCTCACTGGAATATCTTAACCTCCGTGATAATGATCTTAGCATGGAAACTAATTGGCTTCAATTAGTGACTATGCTTCCATCACTTTCATTCCTCAGTATGCGTGCTTGTCAACTTAAAGACTTGAGCTTGTCTCTCCAGTATGCTAATTTTACTAAACTCGAATTTCTTAGTCTTTCTGCAAATGAATTTAACTCAGAGTTGCCTAAGTGGTTATTCAATCTTAGTTGTGGTATTTATGAGTTAGACCTTAGCTCAAGTTCTCTAATAGGACATCTACCTAAGGACTTGTTAAATCTTCGAGAACTAGAATTCCTGAACATGGAAGACAATAACTTTGATGGACCCATTCCAGATTGGTTAGGTCATTTCAAACATTTAGAAACTCTTATTCTTGGAGTAAACAAATTTTCAGGATCTATTCCCACAAATTTGGGAAATCTATCAACCTTGATTACCTTGGTTGTTGGCTCAAATCCATTGACAGGAGTTGTGACTGAAAGAAATTTTGCCAAATTGTCAAAGTTAAAGGAACTGGGCATATACTCATATGTCGGGTTAACCTTTGATTTTGACTCGGATTGGATTCCACCTTTTCAACTTGAGGAATTAGTACTTGGGTTTTCAAATCCCAACCTTCCTGCGTGGTTCTATACACAGCGATCACTTGAAAGATTAACTATATGGGATTCATCATTTGAGGCTCCAGACAAATTTTGGAATTTGTTATCATCAGTGATTGAACTCGAATTACAAGGCAATTTGATAGACGGGGACATGTCAAATGTGTTGTTGAACTCTACATTCATTGTCATATCATCAAATGGTTTGAAAGGTTGCTTGCCTCAAATATCACCAAATGTGGTTTTTGTCTCATTATCAAATAATTCATTATCAGGAGAATTGTCTCCCCTCTTATGTGGTCATAATGTGTCGAATGGGAAAAACAATTTGTTGTATTTGGACATATCATTGAATAATATATCTGGAGGGCTTACGAATTGTTGGAAGAATTGGAAATCTTTGGTTGCTGTTCACTTGGGAAGCAATAATCTATCAGGAAAGATACCTCCTTCACTGGGCTTCTTATCTAATCTCACCTCACTCCATTTGCATGAGAATAAACTACATGGTCAGATTCCTCTGTCATTGCATAATTGTCACTCTCTGTTGGTCTTTAACGTTCGCAATAACCACTTATCAGGGAACATACCAGATTGGATATCTCAAGGTGTATTGGCTCTCCAATTAAGGTCCAATCATTTTAGTGGTAAAATCTCACCACAAATATGTGAAATGTCTTCCCTCATTGTGTTGGATATTGCACAAAACACTATCTCCGGTGATATACCCACTTGCTTTGGTAATATCAAAACCCTACTTATCAACAATGTCTCACGCCACAAACTTTCTTTTCAATTTCCTTCATCAAGTCCTGGTCGTTACTACTTCAACGATGACAGTCTAGAATTGGTTACTAAAGGTCAAATATTAGAATATGAAGAAAACCTACATTTTATGACCTTAATTGATATGTCAAGTAACAATTTGTCCGGAACAATACCTCCACAGATGTTTAGTCTCATTGTATTGCATTCCTTGAATTTATCCAACAATAAGTTAGCAGGAGAAATACCAAATGAGATTGGAAATATGAAAAACTTGGAATCCCTCGATTTTTCAACAAACCAACTTGGGGGAGAAATTCCTCAGAGCTTATCCACATTGTCCTTTTTGAGTTACTTGAACCTGTCATTCAATGATTTAACAGGCAAAATACCATTAGGCACACAACTTCAGGGATTCAGTGCACTTAGTTACATGGGCAATCATGATCTTTGTGGACCCCCACTTACCAAAATCTGCTTTCAGGATGATAATAACACACAGCTTTTAGACAAAGACGAAAATCAATCTGAATTTTTGCCATGGTTTTATATCGGAATGGAATCCGGATTTGTCACAGGCTTTTTGGGAGTTTGTTGTGTTATTTTCTTAAACAAAAAGTTCAGGTCGTGGTGGTCGTCAACATGAATCCCTTTCATTAAATTCAAAGAAATTGCACAATAATACAGGTCAGTAAAAAAAATTTATACAAATTTTATTTGAATTTATCTTTAATAATAGTTTGTTCTTCACCATTACTAAACTATATATACTTAAGTTCTTCAATTATTTTTTAATTATTGATTATTCTTTATATGTTTTTAAATTATAGTAATATTTATATCTAACTTATTTGTAAACATATATTAATAAAAGTGAATTTAGTTTAGAATGAAAACCATATATTAGTTTTCTCAACTCACATATGTCATAGCGGTATCTTAACTTTTAAGGGTTTTTTTTTGGTAAATTCTATTATCTTTTAAGTTGTTAAACTAGAGTGAGTGAGTAAATCAATTTTCTTTATTTTAGTTCAATTTATTTTCTTATCAAAATTGGGTCGATGAAAAACAATGGTTTTAAAAGTGAAAATATATTAGAATAATGTAAAGAAGAAATATGAATTTAAGATGTTTTATGGTGTATTAAAAATTTTAAGTTGCTAACTTATATGATAATGATAATGAAGCCTTTCCTATTAATTTAGTTATTCTTATAAAATTCTTTCATTATTATATCGTAGGTATTTTTCATTCATCAAAAAGGAAAGGAGTCATGAAGCTTAGGAGAAGAGAACATGGTGGTGTAATTCTTACAAGCAATGTCAGCAGTGATGAACTTAATATTTAA