Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01732	LG1	20419953	20423227	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	hormone-mediated signaling pathway, signal transduction, hormone-mediated signaling pathway, hormone-mediated signaling pathway, hormone-mediated signaling pathway
Cellular Component	is active in	plasma membrane
Cellular Component	located in	plasma membrane, nucleus, plasma membrane, plant-type cell wall

SNP	Position	Effect
A/T	20420147	intron_variant
A/T	20420175	intron_variant
G/A	20420380	intron_variant
C/T	20420418	intron_variant
A/C	20420426	intron_variant
T/A	20420430	intron_variant
A/T	20420446	intron_variant
A/G	20420463	intron_variant
T/A,*	20420466	intron_variant
A/T,*	20420487	intron_variant
A/T	20420498	intron_variant
A/T	20420504	intron_variant
T/G	20420527	intron_variant
G/T	20420535	intron_variant
C/T	20420554	intron_variant
T/C	20420827	intron_variant
G/A	20420837	intron_variant
C/G	20420875	intron_variant
C/G	20420877	intron_variant
T/C	20420878	intron_variant
C/T	20420885	intron_variant
T/C	20420918	intron_variant
C/T	20420939	intron_variant
A/G	20420959	intron_variant
C/A	20420972	intron_variant
T/A	20421050	intron_variant
C/T	20421055	intron_variant
A/G	20421068	intron_variant
A/T	20421508	intron_variant
C/T	20421515	intron_variant
C/T	20421522	intron_variant
T/A	20421530	intron_variant
A/G	20421540	intron_variant
C/G	20421548	intron_variant
G/C	20421599	intron_variant
C/T	20421605	intron_variant
G/A	20421613	intron_variant
G/A	20421649	intron_variant
C/T	20421652	intron_variant
C/T	20421655	intron_variant
A/T	20421670	intron_variant
T/C	20421672	intron_variant
C/T	20421674	intron_variant
T/C	20421688	intron_variant
G/C	20421703	intron_variant
T/G	20421873	intron_variant
A/T	20421995	intron_variant
G/T	20422024	intron_variant
G/T	20422034	intron_variant
T/C	20422050	intron_variant
A/G	20422067	intron_variant
A/T	20422091	intron_variant
T/C	20422231	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01732.1

MNTSPSQNAIISVWLLCGIIFNTAFCSFNIHCNQQDMHGLLNFKQGVTDPSGVLSSWTTQLDCCHWKGVICSNITNRVIGISLLCSTTLPIYRDEEDKSHCLTGSIRLSLLLVELEFLEYLNLRNNDFLALHFDYRHNHNCHNLSIPTSPRLCVNSSTLRHLDLSLNWNLVINSLQWLPYISSLEYLDLRDNDLSMETNWLQLVTMLPSLSFLSMRACQLKDLSLSLQYANFTKLEFLSLSANEFNSELPKWLFNLSCGIYELDLSSSSLIGHLPKDLLNLRELEFLNMEDNNFDGPIPDWSNHFSGKISPQICEMSSLIVLDIAQNTISGDIPSCFGNIKTLLFNNVSRNKLSFKFPSSSPGRYYFNDDSLELVTKGIFHSSKRKGVMKLRRREHGGVILTSNVSSDELNI*

CDS Sequence:
>Vu_01732.1

Promoter Sequence:
>Vu_01732::LG1:20423227-20425227(-)

AGAGGCTGACAAGGTAGTTGAACCCGTCAGCCTTTTGAACGTCCGTTCTGGAGGGGGCCGTACGTATATAATATTATAGACGTTCGGCCCCCTCCAAAACGAACGTTCAAAAGGCTGAAGCAATCAACTCTACAACTCCCCCCGTCAGTCTCTTAAACGTCCGTTCTGAAGGGGGCCAGACGTCTACAAGCTGAAGCAATCAACTCTTCAACTCCCCCCGTCAGTCTCTTGAATGTCCGTTCTAGTGGGGGCCGGACGTCTACAATATTATAGACGTCCAGCCCCCTCCAGAACGGACGTTCAAGAGACTAACGGGGGAGTTGAAGAGTTGATTGCTTTAGCCTTTTGAACGTCCGTTCTGGATGGGGCTGGACGTCTATAATATTGTAGATGTCCGGCCCCCTCCAGAACGGACGTTCAAAAGGCTGAAGCAATCAACTCTTCAGCTCCCCCGTCAACCTATTGAACGTGCGTTTTGGAGGGGGTCGGACGTCTATAATATTGTAGATGTCCAGCCCCCTCTAACGGACGTTCAATAGGCTGACGGGGGAGTTGAAGAGTTGATTGCTTCAGCCTTTTGAACGTCCATTCTGGAGGGGGCCGGACGTCTACAATATTATAGACGTCCAGCCCCATCCAGAACGGACGTTCAAAAGGCTAAAGCAATCAACTCTTCAACTCCCCCGTTAGTCTCTTGAACGTCCGTTCTGGAGGGGGCCGGACGTCTATAATATTGTAGACGTCCATCCCCCTCCAGAACGGACGTCTCCATAATCAATTATTTACATTTATGTCACCGGTCAATTATTTACGTTGGGGTTTTGGTGGACCGAGGTCTATTAGGTGACGTTAAAGGTCAATTCTGCAGTAGTGTTCTCATAATAAGATTAAGAGTATTATTTAATTTTCTTTTTTGTGTTTTGAGATATTTTATGTGTATTTAGGAGCTTAATAAGTTCTTAAATCATTTGTCATTATAAAAATTTTAAATAAGTTTTTATAACAATAAAATTTATTTATTATAAGTTTGAAATATGACTTATATATTAGAATTAATTTTTACAAATTTTCACCACAATATAAATTATATATTAAAATATTCAATTACTAAAACTTAAGTTACATAAAATTATATTTATAGTTAAATATATTTTAAGTTACTTTATTTTGGTTACTTCATTTTTAATTCCTTATCTTTTTAATTTTAAAAATTATTTATTAACCCTCTGTGTAGGTGTTATTAGTCAAAATAAGGAAATTACAAAAATTACAACTTATAATGTTTTTTAACCACGAAAACAAAAAAAAAAATATAAAAAGTTTAAATCTTATCTCTTAATAAGAACATAAAAAATTTCTGTTTCATTTCAAACCGTTGCACGTGTTTCTATAAATTAAATATTTTGTTTAAAAATATATATACCTAAATGAAACTATTAAATATTAAAATATTTAGTAATATTTTAAGTAAGGAGTGAACACGATCGATGCATAATTAATCTTTGATTTGAATATGTGTTTCCAAAATGGATGCCGTAGGATAGGGCTCACATTTGGTCAAGCAATGTCACGATCGGTTTCTCTAGTCACGATCTTTAACACAAAATTCTATATTTTCTTGTATAACACAATATTTCATTATATTATCAGATGGCAAACTCCAACATCGTTAAATGCAAATAACTAAATCGTAACAAATTATTTCAGTTTAATATTAAAGTTGTAAATATGGCATTACATTAAAGATTTAAAACAAAAAAGCATCTTTTATAATAATAATCTTACCCTCTGAAAGTATAATTATTTCGGATTAAAAATAATTATTATTTATTTTAAAAATGAATATTTTCATTATGCTTTTATTTTTAAGACATCTTATTAAAATTATGAAAGATATATAATAACTCTTAATCTGATAATTACTGGGTAAACCGCCCCAATTATTATAAATAGAGTTTCTCTCCATTAGATGCCATCAGCCCTTCATTTCTCTTCCAATC

Gene Sequence:

>Vu_01732(-)

ATGAATACATCTCCCTCTCAAAATGCAATCATATCTGTATGGTTGCTATGCGGAATCATCTTCAACACTGCCTTTTGCAGCTTCAATATTCATTGCAACCAACAGGACATGCATGGTCTCTTAAACTTCAAGCAAGGAGTTACAGACCCCTCAGGTGTCCTTTCCTCATGGACAACTCAACTAGATTGTTGTCATTGGAAAGGAGTCATATGTAGCAACATCACTAATAGAGTCATTGGAATCTCTCTCCTATGTTCTACAACTCTTCCAATTTACAGGGACGAAGAAGATAAATCACATTGCCTTACAGGTTCCATTCGTCTCTCCTTGTTGTTAGTGGAGTTGGAATTTTTAGAATACTTGAATTTGAGAAACAATGACTTCTTAGCATTACACTTTGATTATCGGCATAACCATAATTGTCATAATCTATCTATACCTACTTCTCCTCGTTTGTGTGTCAACTCTTCAACCCTTCGTCATCTTGATTTATCACTTAACTGGAATCTTGTTATCAATAGCCTTCAATGGCTTCCCTACATTTCCTCACTGGAATATCTTGACCTCCGTGATAATGATCTTAGCATGGAAACTAATTGGCTTCAATTAGTGACTATGCTTCCATCACTTTCATTCCTCAGTATGCGTGCTTGTCAACTTAAAGACTTGAGCTTGTCTCTCCAGTATGCTAATTTTACTAAACTCGAATTTCTTAGTCTTTCTGCAAATGAATTTAACTCAGAGTTGCCTAAGTGGTTATTCAATCTTAGTTGTGGTATTTATGAGTTAGACCTTAGCTCAAGTTCTCTAATAGGACATCTACCTAAGGACTTGTTAAATCTTCGAGAACTAGAATTCCTGAACATGGAAGACAATAACTTTGATGGACCCATTCCAGATTGGTTAGGTCATTTCAAACATTTAGAAACTCTTATTCTTGGAGTAAACAAATTTTCAGGATCTATTCCCACAAATTTGGGAAATCTATCAACCTTGATTACCTTGGTTGTTGGCTCAAATCCATTGACAGGAGTTGTGACTGAAAGAAATTTTGCCAAATTGTCAAAGTTAAAGGAACTGGGCATATACTCATATGTCGGGTTAACCTTTGATTTTGACTCGGATTGGATTCCACCTTTTCAACTTGAGGAATTAGTACTTGGGTTTTCAAATCCCAACCTTCCTGCGTGGTTCTATACACAGCGATCACTTGAAAGATTAACTATATGGGATTCATCATTTGAGGCTCCAGACAAATTTTGGAATTGGGTATCATCAGTGATTGAACTCGACTTAGAAGGCAATTTGATAGACGGAGACATGTCAAATGTGTTGTTGAACTCTACAGTCATTGACATATCATCAAATGGTTTGAAAGGTTGCTTGCCTCAATTATCACCAAATGTGGTTTTTGTCTCATTATCAAATAATTCATTATCAGGAGAATTGTCTCCCCTCTTATGTGGTCATAATGTGTCGAATGGGAAAAACAATTTGTTGTATTTGGACATATCATTGAATAATCTATCTGGAGGACTTACGAATTGTTGGAAGAATTGGAAATCTTTGGTTGCTGTTCACTTGGGAAGCAATAATCTATCAGGAAAGATACCTCCATCACTGGGCTTCTTATCTAATCTCACCTCACTCCATTTGCATGAGAATAAACTACATGGTCAGATTCCTCTCTCATTGCAAAATTGTCGCTCTCTGTTGGTCTTTAATGTTCGCAATAACCAATTAGCAGGAAACATACCATATTGGATATCTGAAGGTGTATTGGCTTTCCAATTAAGGTCCAATCATTTTAGTGGTAAAATCTCACCACAAATATGTGAAATGTCTTCTCTCATTGTGTTGGATATTGCACAAAACACAATCTCCGGTGATATACCCAGTTGCTTTGGTAATATCAAAACCCTACTTTTCAACAATGTTTCACGTAACAAGCTTTCTTTTAAGTTTCCTTCATCAAGTCCTGGTCGTTACTACTTCAACGATGACAGTCTAGAATTGGTTACTAAAGGTCAAATATTAGAATATGAAAAAAACCTACATTTTATGACCTTAATTGATATGTCAAGTAACAATTTGTCCGGAACAATACCTCCACAGATGTTTAGTCTCATTGGATTGCATTCCTTGAATTTATCCAACAATAAGTTAGCAGGAGAAATACCAAATGAGATTGGAAATATGAAAAACTTGGAATCCCTCGATTTTTCAACAAACCAACTTGGGGGAGAAATTCCTCAGAGCTTATCCACATTGTCCTTTTTGAGTTACTTGAACCTGTCATTCAATGATTTAACAGGCAAAATACCATCAGGCACACAACTTCAGGGATTCAGTGCACTTAGTTACATGGGCAATCATGATCTTTGTGGACCCCCACTTACCAAAATCTGCTTTCAGGATGATAATAACACACAGCTTTTAGACAAAGACGAAAATCAATCTGAATTTTTGCCATGGTTTTATATCGGAATGGAATCCGGATTTGTCACAGGCTTTTTGGGAGTTTGTTGTGTTATTTTCTTAAACAAAAAGTTCAGGTCGTGGTGGTCGTCAACATGAATCCCTTTCATTAAATTCAAAGAAATTGCACAATAATACAGGTCAGTAAAAAAAATTTATACAAATTTTATTTGAATTTATCTTTAATAATAGTTTGTTCTTCACCATTACTAAACTATACTTAAGTTCTTCAATTATTTTTTAATTATTGATTATTCTTTATTTATTTTTAAATTATAGTAATATTTATATCTAACTTATTTGTAAACATATATTAATAAAAGTGAATTGAGTTTAGAATGAAAACCATATATTAGTTTTCTCAACTCACATATGTCATAGCGGTATCTTAACTTTTAAGGGTTTTTTTTTGGTAAATTCTATTATCTTTTAAGTGGTTAAACTAGAGTGAGTGAGTAAATCAATTTTCTTTATTTTAGTTCAATTTATTTTCTTATCAAAATTGGGTCGATGAAAAACAATGGTTTTAAAAGTGAAAATATATTAGAATAATGGAAAGAAGAAATATGAATTTTAGATGTTTTATGGTGTATTAAAAATTTTAAGTTGCTAACTTATATGATAATGATAATGAAGCCTTTCCTATTAATTTAGTTATTCTTATAAAATTCTTTCATTATTATATCGTAGGTATTTTTCATTCATCAAAAAGGAAAGGAGTCATGAAGCTTAGGAGAAGAGAACATGGTGGTGTAATTCTTACAAGCAATGTCAGCAGTGATGAACTTAATATTTAA