Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01725 LG1 20277438 20279086 PREDICTED: probable WRKY transcription factor 40
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of transcription, DNA-templated, defense response to bacterium, defense response to fungus, negative regulation of transcription, DNA-templated, regulation of defense response to virus by host, defense response to fungus, regulation of defense response, defense response to bacterium, regulation of defense response to virus by host, response to molecule of bacterial origin, response to wounding, negative regulation of transcription, DNA-templated, regulation of defense response to virus by host, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to salicylic acid, response to molecule of bacterial origin, defense response to bacterium, negative regulation of transcription, DNA-templated, defense response to fungus, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to molecule of bacterial origin
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/C 20277486 missense_variant p.Asp254Glu
T/C 20278113 intron_variant
T/C 20278666 synonymous_variant p.Gln58Gln
A/T 20278878 intron_variant
G/A 20278901 intron_variant
G/A 20278979 intron_variant
T/G 20279005 intron_variant
G/T 20279013 intron_variant
T/C 20279027 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01725.1
MLVQVLNTAVIMDLKVESLKSELKRVREENNTLRVMFEVLSSKYTKLESHLQEINKEQHKGMSSNQIGSVTEAILDVNKRRRLEFPTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSIANDKEAMNILALSGLSQTDRRHGEEVMNQHNYDTNIKVEEYVSSLIKDPDFTMSLAEAVARTITGDLKQQDINLNLNIPEE*


CDS Sequence:
>Vu_01725.1
ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATCTAAAGGTGGAAAGTCTTAAATCTGAGTTAAAGAGAGTGAGAGAAGAGAATAACACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACCGAAGCTATCTTGGATGTGAACAAGAGACGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACACCCCATGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCATCAGTGGCCAACCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAACATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGACATGGTGAAGAAGTAATGAATCAACATAACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGACCTCAAGCAGCAAGATATAAACCTCAATTTGAATATTCCGGAAGAGTGA


Promoter Sequence:
>Vu_01725::LG1:20279086-20281086(-)
TGAATATAGAGCTCTTGCCACAGCTACTTGCGAAATTCAATGGTTAACTTTTCTTCTACAGGATCTTCACGTAACTTTTCAACAACCAGCAGTCTTGTTCTGTGATAACAAATATGCCCTTCATATTGCTGTAAACCCGGTTTTCCATGAATGCACGAAGCACATTGAAATAGATTGCCATATTATAAGGGAAAAACTTTCTTCTAGCTTACTTAAACTACTGTCGATTCCTTTTGCATGTCAGTTAGCTGATATCTACACAAAAGGACTTCCTCCCGCAGCTTTCAAATTTCTGGTCTCCAAGCTGGGAATGATTGATATTCATTCTCCAACTTGAAGGGACTGTTAGGATTTAATATCTGTTATGATTTAATATCTTGTTAGGATTTAAAATCTTTCTTGTTATTATTTCTGTTTGTTATTATTATGTTTATATAGCTGGTAGATTAGATAGAATTATAACTATTTTTATTATAATCTTGATGTATAAATATATGTATCTGCATTATGCAGAATCGATATAATATTCAAACTATTTTTGCTTCTCTGTTTTTCTTCCTCTGCATTGCAATCTCAATACTTGGTTTGAATGATGATTCTCATTATTTAAGAACCCAATTAACTTTAACCCATAATAAATTGTCTTTTTAGCACCCATAATTAAGAAAATGGTTATTTATATATAACTCAACCTTTTAACATGATCCATTTTAACATATAAAATAAAAGTAAACAATACACAAAGAAATTGAAGATATAACAGAATATATATACCCTCGGTGTTTTTAAATTAGGAAGGGTTTATTTTTTATTTTGGTGGATGAAAAATTTGTCTATTTTTATTCAATAATTATAAATTATTAAATTACTTTGAGCAATTGATGTTAAGAAAAACAGCAACGCAATCAAATATTCTCTGCTGAATTGTCTTGCCCCATGAGAAGATTCTACAAACTACAGTAAGAAAAATAAAATTCTTACGCGTCATGTTCATTTTCAGTAACAGTTGCCACTGCATGTTGTTCACGTTCTAATGGAATTCTATATGACAACACTATGTCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATTATAAAACTTTAAATCTCATTGGAAAATAACACAAATAGAAAATATAACACTACAATTAAATTGTACAGTGCTTATATTTTTCAGATAATTTATGCTATATGTATATATATATTACTGACTGATTTCTCAGGTGAATTTGACTTGTAATTTTAAGTAAAAAAAATTCTCAGTCACGCTTTTATATGTATGAACATTAAATGAGACTTTGGTTGATAAAACGTGAACGATTTTATTTGAACCAATGACTTGAGAATATACTTATAAATTATAGACTAACTTTACATGTTAATTTTTGGTAGTTGATGAAAAAATATGATAGAAATAATTGAATAAAACAAAGTCTGCAGTGTGTGTACTGAATGGCTTTATCATCGATGCCAAATAATCAAAGAGTTGTTGGCTTTATCTGTGTACCTTGGAACACGTTGGGGACATCATAATCCGTAAGAAAAACTAAACAAGTTTTCTTTCCGAAAGGGTTCTGCAGATGTCACCAACATTACATCATAGTACAAGCGTAGCAGAAACTAGAAAATATGACTCACCATGCATCTTTTCAAAGCATTTATTCTTGTTATATATAATATTCCATCACACAAGCTTTTTTCCAACACATGGTGTTGAATTGAACGATTTACTCACTACTAAGATCCATCTACTTTGGTTCCTTTTCTTTTCATACTGTGGAATAACCAGAGAAAGTGAGGGACCAAAAGCCATATAAAAAAAGAGATTTTCTTTCGTTTCACTCACTCATCTCAACTACCCCTATTCAATATTTTATTCTAATTTATATACTAAGAGGGCTTCATATTTAACAGTTTTCTTATCATCGTTTGCTTTTGGTTAAGAGAAATTCTATCAGTTGTGATTG


Gene Sequence:
>Vu_01725(-)
ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATCTAAAGGTAAACTAACCTGGAAAACTAGTTCCTCCTTTTTCTATGTTGCTTACTCTTGTTTTTGTATTCTCACCAAAGAAGAAACAAGACGTGGTTGTTTTTCTATTTCACTTTTGAGTTTCTCTGTAGTTTGCTTTTAGGTTACCCTTAACAGTTCAGAAACGTATACTGAATGTGAACTTTTTTACCTGAGGCTGAAAGCATATGTAGCTAATTCTTAGACTTGTTGCAACAATCTTGATTTGATGATCAGGTGGAAAGTCTTAAATCTGAGTTAAAGAGAGTGAGAGAAGAGAATAACACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACCGAAGCTATCTTGGATGTGAACAAGAGACGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACACCCCATGGATGATAGTTTGGTATGTGCTATGGCCCATCACTACAAATTTGGTTGTGTATTGGTCAAATGACTTTAATTCATGTTCAAATCAAATTCTATCTTCAAGTTAGTATGTTGATGCAAATTTTGCTTTGGGAATATAGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTAGGTAGAACGAAAGCAATATTCTAAATTCAGTTTGAGCTTTTTCCCTTAAGCAATAAAAAAATGTAATACAATAAAGATTAATAAATGAAAGCACAATAAAGAGGTTAGAATCTAGGATGCTTCATAAACTACACAAATCAATGAAAGCATAAGTTAGCAACACCTTTATGTTCAATAAGGACACTTTAAAAAGGAATCATTGGGTGATTTGATTATTTGTCAAATAATTCTGTGCCAGCAAAAATGGAGATGGGTTTAGTCTATTATGGAAAAGGGACCTGGTCATGAATTAGCAGAAGTTTTCTAATTTATTAGTGTAGTTAGCTAGGAGTAAAACCCATTTCATTTCTTCAAAATGGGTAACTAATTATACTATATTTTGTGTGCATGTATGACTTCAAGAAATCTCAGTGTTGTTTTGTCTTATCATATGGTTTTCTGAAGTGTTTTTGCCTTAATCATTAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCATCAGTGGCCAACCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAACATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGACATGGTGAAGAAGTAATGAATCAACATAACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGACCTCAAGCAGCAAGATATAAACCTCAATTTGAATATTCCGGAAGAGTGA