Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01701	LG1	20044160	20045003	PREDICTED: probable WRKY transcription factor 50 isoform X3	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	jasmonic acid mediated signaling pathway, defense response to fungus, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, defense response to fungus, regulation of transcription, DNA-templated, jasmonic acid mediated signaling pathway, defense response to fungus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, jasmonic acid mediated signaling pathway
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	20044403	downstream_gene_variant
C/T	20044740	downstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01701.1

MTDNNPKPPPDTPDSDDFCNQWPFELSEYMQFDDNQWMHDDIPSFSSENVSNQVHQPSNVREFEGDESYFEGSSSRETGGRENRQVVRERFAFKTISEIEVLDDGYRWRKYGKKMVKNNPNPRCIQKGFSHAL*

CDS Sequence:
>Vu_01701.1

Promoter Sequence:
>Vu_01701::LG1:20042160-20044160(+)

ATTAAAGTTTTGTGGTGAAAAAATTGTTAGGGCAACAAAACAAAGTATTGTTTCCTCAGATATGGAAGAATACTTTACACTCTTTTCAAAGATTTTTCTATGGTATATCCATAGCAAGTATTGGAAACAAACATGATCGTATTACAAACTAATAATATATACAAGAGTGAAAGAAGGCAAGAAAAATGTCTCAGTGTAACAAAAAAATAATAGAAAACAACAAAGGTAATGAAAGATAACTTTATGAGAAAAATCTGTCGATTTCGTGAGAAATGTTTGACAAAAATATTAGATAACTTTATGTTTCTATTTATTTATTTTTAATTCATTTTTCTGTTCTCAATATCTACACTTTCTTTAAGCGTTTACTTTAATTTATCAATTTTTTTTTTCTTTCTCAAAACTTCGATTTAATATTTCTATGAATGTTAAGTTTTAGAAATATTTATAATTGAAAATCTATATGAAAGTGATAATTTTTTATTGTTAAGAAAATGTGCTAATAGTCATGAAAGTGAAGTTTAATTCTTTTAATAATGAATTAAAAAATAAAGTTAATTACTTTATGTAAATGATCGTCATCATCCAAATTTGAAAATTCTTATTTTAAATAAAAAATATAAGTTATATATATTTTGTATCGAAGGGAAGACTTATAAACCCAGACAATATTATTAATCTCAGGTAAAAAGTTGAAACAGCTAAGAATGAAAACCAAAAATTTCTTGAAGTTAATTTGATACGTCTCATCCAAATCAATTGAAACCATTTTATAGCAGCTTGCTGTAAAGGAATATCATGATATATTAAAAACACTATAAACATACATACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTGAAAATAATGCATGCACTGGCAGCAACATATAAACAGTGCAAAGAGTTTTCATATAAACAGTGCAAAGAGTTTTCTTTCTAGTGACTAATTAAAATTTGTCTGATAATTTGAAACTTTTAAGAAAAGAAATTTTAACAGTGATTTCCTAACCTAATTTCTGTGTAAGAAAAACACTTTACAAGGTACATTGAAATTAATCTCTTGTTTAATAATTTTGCTACCAGGAAAGAGAGAAAAAGGAGTCAGACTTTCACTTTCACTCTCTATTTTCTTTGATTTTCACTTTTTTGGAGTAACCACTTAGCCCATTAATTAATGTTTGAATGGCACACTAAAGATAATCTAGAAGGAAGAGTTTGATTCCTCCACTTGCACAACGTAAAATAGTAACTTTTCGAAAACCCTATTTTGTGTAAACAACTTAACAATTTTATTATAATATATACACATAAATGAAAGTGAGCTTGACACTTATGATTCTAAATATAATTTCAATTTCACTTAAAACAAGATTTATATTCATTTTATATTCTGGAAATTCGTCGTTATATATATATATATATATATATATATATATATATATATATATATATATATAAAGAAAAGAAAGGTCAAAAACATGAAGAACATACGTAACAGTGATGAAGTCAGTTTTGTAGTGGCTGTGATGAAAGTAGCGTCTTGTGGTTCGAAGAAACTTGCACAAGACCATACGAAAACACAATCACTTTTGACTTGGACTTGTACTGTTAAGCGTTAATTGGTCTAACAATCAATCAACATTAGCATCTCTTGAAAGTCTTCCCCAAGTCATCCCAAGGTGTACCCCACTAATGCTTTGTCTTCTATTGATCTCTATTCTTAGATATTCTTTTTCATCCACATCAATTGGTTTGTGCCATTGTTTTTTCTACTGCTTCTCATTACCCTTGAAACTTCCTAGATTTCTTGCTCCTAGGAAGCTACCATGAAGCAGCCTTTCAAATAAAACCATCACTGTGGCGTGTCTTTATATATTGTCTCCGCCGTGATCCTTTCTTTTCATATCATTCAGTGTTGTGCCAAAA

Gene Sequence:

>Vu_01701(+)

ATGACAGACAACAATCCAAAACCACCACCTGATACACCTGACAGTGATGATTTCTGCAACCAGTGGCCTTTTGAGCTCTCTGAGTACATGCAATTCGATGATAACCAATGGATGCATGACGATATTCCGTCTTTTTCTTCTGAGAATGTCTCCAACCAGGTTCATCAACCCAGTAATGTACGTGAGTTTGAAGGAGACGAAAGCTACTTTGAAGGGTCTTCTAGCAGTAAGCATATATAAACATATGTAGTAGTTCCTCATGAGACGAAAGTGTGCTTTGTTTTGTATACCTTGAGTATGTTTATTTAGCCATTTTTAAATATTAGTCTCCCTTTTGCTTATAGTTATTGACTGATGTGAACATGTGTGCAATTTTAGGAGAAACTGGTGGACGTGAGAATCGGCAAGTTGTTAGAGAGAGATTTGCATTCAAAACAATTTCAGAGATTGAAGTGCTAGACGATGGATACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAATCCCAATCCAAGGTATGTATATATATGCTTATGATAGAATATGTTAACCTTAAACATTTTTCTACTAGTGTTCATAATATATATAAATAGTTAATTATCATGCTGCTAAATAAACGTAAACAACTGATGAAATAGATTAACGAAACCGATGAGGGAAAAGATAAGCACATAAAATCACATACGTACTTGCATATAAGAGCTATAATTAGCATGTTTGGTTATGCTTCTATACCAAGTTTTATCATCTTGAAGCTACAGCTTCTGCATCATTCTAAGATTTTGACGTGAAAATTGAAGGGTAGGTGCATTCAGAAAGGTTTCTCACACGCACTCTAA