Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01636 LG1 19165683 19169071 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   vegetative to reproductive phase transition of meristem, meristem maintenance, vegetative to reproductive phase transition of meristem, regulation of gibberellin biosynthetic process, floral organ abscission, floral organ abscission, regulation of gibberellin biosynthetic process, negative regulation of cell population proliferation, regulation of transcription by RNA polymerase II, photomorphogenesis, floral organ abscission, regulation of transcription by RNA polymerase II, floral organ abscission, shoot organ boundary specification, regulation of gibberellin biosynthetic process, regulation of transcription by RNA polymerase II, vegetative to reproductive phase transition of meristem, photomorphogenesis, regulation of gibberellin biosynthetic process, regulation of gibberellin biosynthetic process, regulation of transcription by RNA polymerase II, floral organ abscission, vegetative to reproductive phase transition of meristem
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, sequence-specific DNA binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/G 19165699 missense_variant p.Met675Thr
A/T 19165761 synonymous_variant p.Ala654Ala
T/A 19165769 stop_gained p.Arg652*
C/T 19165794 synonymous_variant p.Glu643Glu
G/A 19165886 downstream_gene_variant
G/A 19166067 downstream_gene_variant
G/A 19166117 downstream_gene_variant
C/A 19166136 downstream_gene_variant
G/T 19166491 synonymous_variant p.Ile525Ile
A/G 19166492 missense_variant p.Ile525Thr
T/A 19166573 missense_variant p.Glu498Val
T/A 19166714 downstream_gene_variant
T/G 19166719 downstream_gene_variant
G/A 19166821 downstream_gene_variant
C/T 19166865 missense_variant p.Met483Ile
T/A 19166867 missense_variant p.Met483Leu
T/C 19166874 synonymous_variant p.Gln480Gln
T/C 19167039 synonymous_variant p.Leu425Leu
C/G 19167419 missense_variant p.Ala299Pro
G/T 19167803 missense_variant p.Pro171Thr
T/C 19167888 synonymous_variant p.Pro142Pro
G/T 19167896 missense_variant p.Pro140Thr
T/C 19167970 missense_variant p.Asn115Ser
C/A 19168105 downstream_gene_variant
T/G 19168122 downstream_gene_variant
C/T 19168206 downstream_gene_variant
G/A 19168218 downstream_gene_variant
A/T 19168329 downstream_gene_variant
A/T 19168335 downstream_gene_variant
A/G 19168348 downstream_gene_variant
C/G 19168352 downstream_gene_variant
G/T 19168357 downstream_gene_variant
T/A 19168358 downstream_gene_variant
A/T 19168421 downstream_gene_variant
T/A 19168551 downstream_gene_variant
T/C 19168598 downstream_gene_variant
T/C 19168635 downstream_gene_variant
T/C 19168638 downstream_gene_variant
A/C 19168639 downstream_gene_variant
A/C 19168664 downstream_gene_variant
A/C 19168672 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01636.1
MIIIVIEIVIGVCCLGVRTEEDKRDQRGPVKGCTTNEWHCTKGYYQCLLCSLSPSLLLLLRGPSTSIYLKHLFHPSPTLGSWRETRHPLKKCSSDGSACSAWSYFHFLQGSKMENNMYSASLDIAGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPRSDVHVDGCFINPARIADSNSFVSIQGKSIVGDASNPINSAIQEHLAGGRPIASAASLADRIGLQENLQSSAALPHSMSSLEALGPYIFNNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSSVASLGNFAYNSSNCSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGRSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELMNYPASGVRAGGNKSASAFIPKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVENGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLRERISNCIRAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESTHRSRMSMNSQMLNIN*


CDS Sequence:
>Vu_01636.1
ATGATAATAATAGTGATAGAAATAGTAATAGGTGTTTGTTGTTTAGGTGTGAGGACTGAGGAGGACAAAAGAGATCAGAGAGGGCCCGTTAAAGGCTGCACCACAAATGAGTGGCACTGCACCAAAGGCTACTACCAATGTCTACTGTGTTCTCTCTCTCCTTCCTTGCTTTTACTCCTTCGTGGCCCTTCTACCTCCATCTATCTCAAACACCTTTTTCATCCATCTCCAACACTAGGTTCTTGGAGGGAAACTAGACATCCTTTGAAGAAGTGTTCCAGTGATGGCTCAGCTTGTTCTGCATGGAGCTATTTCCATTTTCTTCAAGGGAGTAAGATGGAGAATAATATGTACAGTGCTTCACTGGACATTGCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCCCATTAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAGTGTTGCAAGCTTGGGAAATTTTGCCTATAATTCCTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGCAGCATGAATGGAAGAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAATGTAGAGCTAATGAATTACCCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCATACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCAATGTATGGAGCACATGCAGAAGAGTCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGAGAATGGATATAGCCAGTGTTTGGATGAGGTTCATACTGTGGCATCTGCGTTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAACTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTAACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATTGAGGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA


Promoter Sequence:
>Vu_01636::LG1:19169071-19171071(-)
AAGTCAAGTTCTTTTGAGAAAAAAATTTATGTCCCCATTGTCAGCGTCCACTATTTGCTACCTATGTTCACCGACGTTCTTCGTAGGAGAGTCTATTTCTAGGTGCTTTAATGAATAAATGAGACAATTTATTGTTTGTCAACGGTGCGTCATCATTTTCGTCGTCCACCGTGAAGGGGGAAGTTTGTTTTTATGTGGTCCAATCTATTCCCTGCAATCTATTACTCTTAGTCACTACATGCCCATATTTGTTATTAATGACAATCCAGTCCTTGCAATTTGTCGTTATCCACTATTGCAAGCCCACATTAGTTACTAATGGTAATCTAGTTTTTGCAGTTTGTCATTGTCCGCCACTGTTGGCCATCTAGTACTGATGATAATCTTCATTGTCAAAGTCATCATAATTGAAGTTTCGTTGTTGTCCACGACTTTCAAATATTATTCTCCACAATTATCGTTAATTGTTTGTCGACCTCTATCGTACTCGTACTCTTTCTCAACTGGATGTCAATAATGATTTCTCAACTACGATTTGCAAGAAGAAATTTATATGGAACAACCTCTCATATTTGTTGCTCAAGGGAGTCTTCTGAGATAGTATTCGGCCTTCTATGTCATATTCACAAATCATTAACAATTTTGTATCATAGAAACCCATATTTTCACTAAGTCTTTATTGATTATATTAGTAATAAGCTTGATATATACTATTTATATACAACAGATGGGAGTGTTAAATATATTATTTTTATCTTATGTTTGTCTTTTATTTTTAATCAGTTTATTATTATTCTTTATTTGTATTTTGGGCTTAACCCAAAATTCTTGTATTATAAATAAAATACTATGTGTATATTCAAGAGAGATTAATCTCAGATATAGTTTTCAGTATATTCAACAAGTATGAATACTAAAATTTATAAACATATTTTTTAAATAAGTAGTATACATAATTTTATAATTTCTAATTTTTAAATATAAACTTGTTGAAAATACAAATTACTTTGAATTAAATTAAAATTAGAAAAATACGTGAATAAGATAACTACTTTTTAGATGAAAAAAACATAAATAAATAAGTAGTTTAAAAAAATATATACACTTGACATGTTAGGTTAATATTGGATTCATGAATTTAACTCAATGTGAGTCAAATGCACATCATTGCATAGTTGACTCATGCGAATTGCATGAACGACTTAAACATACAAATAAGCTAAAATATTCAATTGATTATATATTTTTCCTTACAGTCTCATACTGATCATACTGAAATCCCTACTTAAAAGTTATTTTAGTTATAAATTAATAAAATTGTAATCTAATCTTTTGTTTAGTTTTATATGGATTTTTTTTGTCTCCATTATCTAAGTTATGGTACTAAAAGGTAATTTGTTTTCCACTACAGGGACTGATTTTTGTTGATATTATTTATTTTGAAATGTATTATCTAATATACCTTAATTGTGATAATATATTAATCTAACTTTACAATTTAATAATGTGTGGAGTTTAAAAAAAAAGGATGATGATAGATATTATATTAAAATATGATGTGAATAAATGCAAAAAGTGATGAAATGAGTAGTTGATGAATGATGAAGAAGGAGGTTTATTGATAGGAAAAATTGTCGTCATTAATTGGCATGCTTACATAAGAAGGTCTATGTCTGAGAGCTACTATCCACAAGAAAGTACGTTCAACAGCTACACTACAAACCCTATAGCAGTGTTCTTGCCATTTCTCTCTCTCATTCACACGTCAAAACAATTCCCTCGTGCCTTTGTTGTTACATTGTGTAAGGAAAGCCTTGGCTTTTCTTTACCCCATTTGAGTCATGTTCCTATTCACGTTAGCATCTTGTTTAAAAATGGCTAAAAAACCAAAGGGTCTTCACCAAAGTGTTTCTGAGGCCCCCTACCCTTGCTGTTAACATCAGAGAAAGAGAGAGAATACTGATATTTTTGTTGCATTGCATTTGCAGTGACTGAACAAA


Gene Sequence:
>Vu_01636(-)
ATGATAATAATAGTGATAGAAATAGTAATAGGTGTTTGTTGTTTAGGTGTGAGGACTGAGGAGGACAAAAGAGATCAGAGAGGGCCCGTTAAAGGCTGCACCACAAATGAGTGGCACTGCACCAAAGGCTACTACCAATGTCTACTGTGTTCTCTCTCTCCTTCCTTGCTTTTACTCCTTCGTGGCCCTTCTACCTCCATCTATCTCAAACACCTTTTTCATCCATCTCCAACACTAGGTGCAACATCTACCTCTTTTCGCTCTTTGTTTGTTATGTAAGCTATCTTTTCTTCTTGAGCCTTTACATACATTTTACACACTCTTCCATGCTTTTGGTTTTCTTCGGGTGCTTGTCTTTTTTCTGTTTGCTAAAAGACCACATAAGACGTACATATATGTTTGTGTGTTTTTTTGTAAGAGAATTTAATAGCTTATTAGTCTTTACCATCGTGCTTTCTGCTTATGCTTTATAAATTGTAATCTTTGAGGTCAAATTTGATGACTCTATATCCTTTAGAACATAGTACAGGCAGTTTCTTATTTTTCATGCTCCTTTTTTTTTGTTTTCTAGGTTCTTGGAGGGAAACTAGACATCCTTTGAAGAAGTGTTCCAGTGATGGCTCAGCTTGTTCTGGTGCGTGATAAGGTTGTTTTACTTGGTTTTTCTTTTGACTTAGTCCTTCTCTTGAAATCATTTGTGTCAACTTTAGTTTACAGAAGTAGTCCAAAAGCCTCTTTTTTTTTATTATTATTATTGTTAATTTCGCCTTTCATCTTTCAGTAAGTGTTCTAGTTTGGAATGATGATAAATTAAGTCACAATGTAGGAGAGTTCTCTACTGCTATTTTTGTTGCTGCCTTGTTCTGATTTTCTTTTCCTGTTTGTAGCATGGAGCTATTTCCATTTTCTTCAAGGGAGTAAGGTGATTCTTCCAAAAAAGGGGATAACTACAATTCTTCTAAGAAGGGGAGAAGGAGATTCTACTAGTCCAGATGACCATGAATTTGAACCAAAACCAAGCCACTCTGGAGGTAATGCTGTTTTGAAAGGCTATTGAAGAAGTATCAAGTGCCTCTTTTTACATTTCCCAGATGGAGAATAATATGTACAGTGCTTCACTGGACATTGCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCCCATTAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAGTGTTGCAAGCTTGGGAAATTTTGCCTATAATTCCTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGCAGCATGAATGGAAGAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAATGTAGAGCTAATGAATTACCCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCATACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCAATGTATGGAGCACATGCAGAAGAGTCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTAAAATGCTACCTCTTCCACTCATCAGTGGCACATAACTTATGGTCATGATTTAATTATATGTTCAAATGTGCTTGCTCTGCAGTTATCATTTTTGAACATTAAAGTTTATGCATGGAAAAAGGGCAAAAATATATTATATGGTTGCAGATGATAAACCATATGTATATTAACCTTAGGAAAACAAATATGTGAAAGTTTTGATTTTGACATAGTTACAGCAATGGACTAATGCCCTTTATGATTAGGTGGAGAATGGATATAGCCAGTGTTTGGATGAGGTTCATACTGTGGCATCTGCGTTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAACTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTGAGTTTCTTTATTCCAAGATATTGAATTTCTTTACAACAACTTTTAGCTTTTAGATTGCAGAGACATCAAACAAGAGAACTTACATAAGTTGTTTTGAATTATGAAAGAGGTCTTGTTTGGATAAATTTCAGCAAAAACACTCATAAGAGAAGTAAATAAGAAGATAGAATGGATTACACAGAGTAGTTGTTTTTGTTTTCAATTCGTGGATCTACCCTCAAATGCATGTTTATTTATATGATATGATGTGATGGATTTCAGGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTAACAAGAAGCCAGGTACTTGTTACTCTCCTGTTAGAAACATCCTTTCTACCTGTTTGAGATGATGTTGTATTTATGGTTGATTTAGCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATTGAGGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA