Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01619 LG1 19007115 19009800 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of root development, response to water deprivation, regulation of root development, regulation of cellular response to heat, response to water deprivation, regulation of cellular response to heat, regulation of cellular response to heat, response to water deprivation
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 19007256 splice_region_variant&intron_variant
T/C 19007277 intron_variant
A/G 19007549 intron_variant
T/C 19007789 intron_variant
G/C 19007790 intron_variant
A/G 19007853 intron_variant
A/T 19007866 intron_variant
A/G 19007890 intron_variant
A/C 19007998 missense_variant p.Leu60Phe
A/C 19008005 missense_variant p.Thr63Pro
G/T 19008200 intron_variant
A/G 19008233 intron_variant
C/T,* 19008244 intron_variant
T/A 19008365 intron_variant
G/A 19008570 intron_variant
C/T 19008580 intron_variant
T/C 19008684 intron_variant
A/T 19008685 intron_variant
A/C 19008692 intron_variant
G/T 19008960 intron_variant
A/G 19008983 intron_variant
C/A,* 19009705 missense_variant p.Ser282Tyr
C/A 19009706 synonymous_variant p.Ser282Ser
G/A 19009741 stop_gained p.Trp294*
A/G 19009786 missense_variant p.His309Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01619.1
MGRAPCCDKANVKRGPWSPEEDATLKAYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRQVLIFKLSSKLPGRTDNDVKNYWNTKLKKKIMAGKVSLKTLTENDTLPSTSTPLPTNQSLKTQNSPFNVSPNQLALVLPILEANDNNAFTDNQKNIISFDQTKHHGLYSPQVMHGVSQIGASSRINNNTNESNSNSHMVSLSQEGSSSISDSSSIAMNYNKCVVSQPQQQQQEQQQHCIDESMEMLVDFGFGFPYDFANCHYERVGETFAPEWVDFSYADIKPH*


CDS Sequence:
>Vu_01619.1
ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCCGAAGAAGATGCAACACTCAAAGCCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGCCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGGCAAGTTTTAATTTTCAAATTATCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATAATGGCAGGAAAAGTTAGTCTCAAAACATTGACCGAAAATGACACTCTTCCTTCAACTTCAACCCCATTACCAACCAACCAAAGTCTGAAAACTCAAAATTCACCTTTCAATGTTTCACCAAATCAGCTAGCCTTGGTGCTACCAATCTTAGAAGCAAATGATAACAATGCATTCACAGATAATCAAAAAAACATCATTAGTTTTGACCAAACAAAGCATCATGGGTTGTACAGTCCACAAGTCATGCATGGTGTCTCACAGATTGGTGCAAGTTCAAGGATCAACAATAACACCAACGAAAGTAACAGTAACAGTCACATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCCATTGCAATGAATTACAACAAGTGTGTCGTGTCACAGCCTCAACAGCAGCAGCAAGAGCAACAACAACATTGTATTGATGAATCTATGGAAATGTTGGTGGATTTTGGCTTTGGATTTCCCTATGATTTTGCTAACTGCCATTATGAGAGAGTTGGTGAAACTTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA


Promoter Sequence:
>Vu_01619::LG1:19005115-19007115(+)
TCATCTCGACTCTGGAAGGCTAGTGTACATCTATGCTAGTACACCTCGGCCCCCAAGAGGTTGAAGACACCTTGACAAGACTCTTGACTAACACGTCTCGACTCTATAAGGCTAGTGTACATTTATGCCTAGTACACCTCGACCCCTAAGAGGTCAAACACACCTCAACAAGACTCTCGACTATAACATCTCAAGTGTACATATATGTCTAGTACATTTCGACCCTAAGAGATTGAAGACACTTCGACAAGACTCTCGACCAGTACATGTCAACCCCCAAATGGTTGAGGACACCTCGACTTGCACCACAAAGTAAAGGATACATGTGTCATTGTTGTGGTACAAATCTACCTAAGCGAAAGAACAAATTATAGAAAGATTAAAGATAAGTAGACGTATTAAGAAAACCTTAAAACAAAATCAAGTATGGCTCATTCAGGTATTGTAAATAGTCGTTATTTACAAGGTATGTTAGTGATCTTATTTATTGCAATATATCTATTTACTATCAGTAACTAACTTGAGCGTCAAAGTGTCTTTGTAGGTTCGCCGATGTCACACCACCCTCATCGAAAGTGAACATCTCAACATTCGTGGTGAATAAGACTTGTTGTCTAAAGAGTAGAAAGAATGAAAGACATTAGAGTCATCTAATAAGTCTCGACCCAAATAGAAGACTAGTGTACCTTTGGGTATATCTTTGCCTGGTAGGAACATAACGTGGAAACCCCAAAACCAGAGAAAAACCATGATTTTTGTCTAGTGACAACTAAAGAATAACACTATGTGAAATTTCTTATAACACATAGACAATTCTCTAATGTTTTTTTGACCCCAAATACACTCACACTCTTCAAAGTAAGAATTTAACTTAAACCTCACAACACTATATTACAAGAGTATAGGAAAAATCAAATATAAATTTAAAATGTCTTTAGGTTGGGAGAAGAAACACCATGGACCTTAAGTCCATTGTATAATCACTAACAAACACTCCCTTTCTTATCTTAGGTGATGTAGGACTTTTCAAAATGTATTTTTTTTATCAATTTAACAATATATGTCTAACACACTTTGCTAGAATATTATATTAGGAAGTGAGTTTAAGTTTGAGTAATCCCCTTAAATGTTTGAAAAAACTGATTGTAAACTAAGGAGTATTTTCACTTATATACTTTAAATTAGTTTTAGACTTTTAGTAATTTAGTTTTTATATTTAAAGTTATGATTCACTTTAGTTTTAATAGTATTTTTTTACTCATTGAATCTTAATATTTTTAAATAGAACCAATGTGGTCTTTTTTGTTAAATTAGCATTAATAATATTTGAAATGTGTTACGTGTTAAAATTTGAAAGGATTCATGTATCAAATTAGAAAGATTTCAAGATTTCTTTATTGAGATTTTGACACAGACGACACATTTCAAATAACGTTAATATCAATTTAACAAATAAATCAAACTGACTCTCTTTAAAATATAATGAAACTCAATTAAGTTAAAAAAAGTTATAAAAATAAAAATAAATTATAAATTTAAATATACAAACTAAATTACTAATTAAACATTATTTTTGTATATGATGGGTGTGATCTTCAACCCTTTACTCTCTTTCTTTATATTTTTCAATTATAAGTTATAACAGAAAAATAGATTAAAAAAAAATTTAACTGATTTATTGCTAAGATGTAACATTTAGAAAAAAAAAACTGTGTAAAGAAGAATAATGGACAAACACCCAGTTTTGAACCAACAACAAACAGGCCTAGAATTTGAACCCAGATTGGGTTTGTACAAACTTGTAACAGTCTGAACATGGTCTCATCTTATCTTATTAATTATTACAAGTTAATACAATGTTTTGTCTGGTAGCTGGCTGGGTCCCCCTGCCTCAGATGACACCAACTTTATAACACCTTCACCAGAAAAAGAGTCTCAAAGTCTCATTGTTTTGTTCTTTCTGTGATTATTGGAGTTTCTGTGAGAGAGTGGTGTCGCCA


Gene Sequence:
>Vu_01619(+)
ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCCGAAGAAGATGCAACACTCAAAGCCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGTTTTTCTCTCTTCTTTCCCAATACTTATTCACATTTTTCAAACACTTTCTTCTCATTTCAGTATATGAATCTTTGTTCATCCTTTTTCTCAAGATCTTTTCTGCAACACCCATCTCAACCAAAACATGATTATCTTTGTTTTGTTCAACATGGAGTTTTGTTTTGTGTTATGTATATCGATACATACATTTTACTTTAATTCCAGTTTCAATTATCATTTTCTTTTGTTTATTCCTATACTCTTCATCAAAAGTTAAAGACTAATTCTTTTTGAAGCATTGAATTCACAAACTGCATATTTAAAGGCCATAATTGTATAGAAACTCATCTCACTATATTTATGATACATTAATTTGAGTTACAAATACATTGACAAATGCAACTGTTTTCTCAATCTATTTCAGTTTTCTCAGTGTTTGTTCAATTTCCAAGTCCACTAGTAGACACACTTTTTCCGCAAATGACATTATTTCCTTTGAATCCTTTTGGTCAAAATCATAAATAGCTTCTGCAGTTTACAAGGCATGAAACAAGGAATGGGAGTTTCTCCTGTTATAATACTCTTAATTAATCTCTTTATTTTGTACCTATTTTTTTCATTATTTTAATAAAAAAATATTCATCCATCTTTTATATTTATTATAAACTTCATCTATTTACTTTATTTTTTCTTTATTATATATTTTTTATTTAATATGCAGGCCTTAGACGGTGTGGGAAGAGTTGCCGCCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGGCAAGTTTTAATTTTCAAATTATGTAAATTTCACACTATAATATTCACCATCCATTAAAAAAATAATCAGCAACAGATATATTAATAAAATACATCCATAAGAGATTATTCTAATTGGGATTTAGCCAATGCTTATATGATTATGTCTCTATTCACTACAGCCTATATGAGCGGTATTATTAACTGACAATTATAATAAAATTTTCATTTTACAAAAATATATTAGCTTGGACCACGTCATGTGGTACGGACCAATTCTTATATAACATGTCATTTTTTTTTTATTGAAAGGTTTAAAGATAGTGTTGTAGATTTAAGCTTTATATTATAACCAAATAAATTTATAATTATAAATTATATACCGTGAGTTTATAATTATGTGTTGGAAAAATTCATACCACGCGGTTTCGTTTAATTTATATATAACACATACATACACTTTATAGTTTTTCTGAATAGTTTGAATAATATTTTATATTTAAATTTTGTAACGATAACTAGTATGTGATAATTACGAATGAGAAAAATCTTTTTCAGCACAAATTATTGTATAATTTGGGAGCTCATCATATAACACGTTAATTATTGTTTCATTTTTATTTAGGGATAAAGGGTTTTGAAACAATAATTTAACTTTAAATTTTATAACTTTTTATGTATCGGAGAAACCCATTTTAGAATAAATTATTCTATGGACAGGGACCACACGGTTTCCATCAAATTTTATATAATATGTTTGCTTTAATTTTAAAAAGAGATTTAAATTCAAATTTTATTATTGTCATTGTACAACTCATAATTTTTCTAATGAAATCCTTAACAAACCAAAACAATAGTTTAGAGTCAACAGTGGCCTAATTAATTGTTAGACTTATATGAAAAGGAAACATCACTATGTTTACACCACACACATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTGATAAAATTTGTGTTCTTGCTTGTTCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATAATGGCAGGAAAAGTTAGTCTCAAAACATTGACCGAAAATGACACTCTTCCTTCAACTTCAACCCCATTACCAACCAACCAAAGTCTGAAAACTCAAAATTCACCTTTCAATGTTTCACCAAATCAGCTAGCCTTGGTGCTACCAATCTTAGAAGCAAATGATAACAATGCATTCACAGATAATCAAAAAAACATCATTAGTTTTGACCAAACAAAGCATCATGGGTTGTACAGTCCACAAGTCATGCATGGTGTCTCACAGATTGGTGCAAGTTCAAGGATCAACAATAACACCAACGAAAGTAACAGTAACAGTCACATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCCATTGCAATGAATTACAACAAGTGTGTCGTGTCACAGCCTCAACAGCAGCAGCAAGAGCAACAACAACATTGTATTGATGAATCTATGGAAATGTTGGTGGATTTTGGCTTTGGATTTCCCTATGATTTTGCTAACTGCCATTATGAGAGAGTTGGTGAAACTTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA