Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01613 LG1 18855052 18856673 PREDICTED: transcription factor RAX3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phenylpropanoid metabolic process, phenylpropanoid metabolic process, response to water deprivation, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, response to water deprivation, abscisic acid-activated signaling pathway, response to water deprivation, abscisic acid-activated signaling pathway, phenylpropanoid metabolic process
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 18855138 synonymous_variant p.Leu340Leu
A/G,* 18855172 missense_variant p.Leu329Pro
C/G 18855301 missense_variant p.Arg286Pro
C/A 18855458 missense_variant p.Ala234Ser
T/A 18855568 missense_variant p.Lys197Met
G/A 18855707 missense_variant p.Pro151Ser
T/C 18855815 missense_variant p.Ser115Gly
A/G 18855824 stop_lost p.Ter112Argext*?
C/A 18855915 downstream_gene_variant
A/G 18856048 downstream_gene_variant
A/C 18856055 downstream_gene_variant
G/T 18856069 downstream_gene_variant
G/T 18856175 synonymous_variant p.Arg72Arg
G/A 18856178 missense_variant p.Leu71Phe
A/G 18856294 downstream_gene_variant
C/T 18856433 downstream_gene_variant
T/C 18856441 downstream_gene_variant
C/T 18856490 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01613.1
MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQEISDANRRSSDGDSSSLSMVQENSSTSQQHHQQQHQQLCWPQNINMPVLPLPIIPLPYTTSQGPGFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQCSSQGQQVYQEQVHVGSSSSSACIVANNEVHFGQNGQYSGVDDMMQGQDGNFTPSFEEMVPSSNYSDGLEFLYNEGMILHKITDSTITTTCDQNTTTTTTNWDETTTSIYHHDSLASHFEGQECALQEFSYPGAQ*


CDS Sequence:
>Vu_01613.1
ATGGGCAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTGAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAGGAAGAAGACAACATTATTTGCAGCCTTTACATCAGTATCGGAAGCAGGTGGTCGGTGATTGCAGCACAGTTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCATCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAATTAGTGATGCTAATAGAAGGAGTAGCGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAATAGTAGCACTAGTCAACAACATCACCAACAACAACATCAACAATTATGTTGGCCACAGAACATCAACATGCCAGTGCTGCCACTACCCATAATACCCTTGCCATACACAACAAGCCAAGGTCCAGGTTTCAACGACCAAGATTCCATCAAGAAACTCCTGATCAAACTAGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACCCTTGATGGGTTGAACCTTCAATGCTCCTCACAAGGGCAACAAGTTTACCAAGAACAAGTCCATGTTGGTTCCTCTTCTTCTTCAGCCTGCATTGTTGCCAACAACGAGGTACACTTTGGACAAAATGGTCAATACTCTGGAGTTGATGACATGATGCAAGGACAAGATGGTAATTTCACGCCATCATTTGAGGAAATGGTGCCTTCTTCTAATTATTCAGATGGGTTAGAGTTCTTGTACAATGAAGGCATGATCCTCCACAAGATAACAGATTCTACTATCACTACTACTTGTGACCAAAACACCACTACCACCACCACAAATTGGGATGAAACCACCACTTCCATTTATCACCATGATTCACTTGCTTCCCATTTTGAAGGTCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCAGGGGCACAATAA


Promoter Sequence:
>Vu_01613::LG1:18856673-18858673(-)
TTTCTTTATAAAACCTTTGTGTGTGTGTGTGTGTACGCAGTAGTCAGCCTACTGCCTCGGTTCTCACGGCACTCTTATTATCTAGTAAGTCATTTTGTTCACCAACCCAAAATGAAAGAGAAAAACCCTCACAACTTTTCCTCATAAATTCAATGCACGGTTTTCCCCAATTTCTTTTTCTTCTAGAATCTTTCTTAACCTTTCAATTTTGGACTAAAATCAATGAGATTGATTAGACCTTATAGATATCAACATCGTTCAATTTTTAATTTCCTTTCCTCGATGAAGCTTGGTTGGTGACTTACGGACCCCATATGATGAAATTATGTTTATTATTTCTCACTTTCAAATCCTCAGGAAGTGAGTTTTTGGATGTGATAGTCCTATTAAGATTATTAATATCTTTACACGAATATATATTTTTCAATAAATCTTCAAACACATGGATTACAAAAACCAAATCACATCATCAACAACATCATTATACATTGAAAATATCACAAAATCATGTGTAGTTTCTTAAATCAGAATAAATTTCATAAAAAGTTCTTTCAAAGGCCTCTTCTATATTTGTGTGTTTTGCTTCTCTCATTTGTAAATATGAGTTTTTGTTAAATTCTTCTATTTCTCACCAGTCTCACTTTCCTGTTTCATGTGCATTAAAACCTAATAAAAGATTATCCTTTAGAAACTATTTTTCTAAGAAAATCTGGTTTGAAAATAACTCTAAACATATAGATTTTTGAACGGTCTTTCAGTTCAGGAAGCAGATGTGTCCTTCTCGTGTATATCAGACTCTCTGTGCCCTAAAGTGACCATAAAACTGGTCAACTTAGAAGTTGGAAAGATATTAACTTTACACTAATATAAGACAGCCTTCACAGCCAATTTTCAAAGCATTGACAAAAGCTACATCACAATTAAACAATGTCCAACATTGTTGATAACTCCTAAACAACAGAAACTGTAATACAAACTTAAATAGTACATATTTCTTACTTTTATTTCCATGCTATAACTTTATTAATTAATAAGGCTTAAGAAGTCATCAACCAATTCTTTAAATAAAAAAAAAATAATTTTTTTATGAAACAACAAATATACTAAATAAAGATATTTAAGGGTTCCCAATATACACAACATTATTTCATCACTAAATTGTACAAAAATAATAATTAATGGCATGTTTTACCATTAAATTGTCATCTTTTTTTGTCGCTCGTTTTATATAATTAAGTTTCCAATTTTTTGCACATTTTTATCGTAATATTTTTCAATTTTTATACATTTTATTAGTCACAAAACGAAGTTACTTAATAAAAATGGTCATAAATTGACTTGTTTTTATAAGAACATGTTACAAAAAAGAAAAAAAACACATTCGACATATCAATGAAGGAAAACTAAAAATGGGGTGGGAGAGAACTGTAATGATAACATTTAGAATTTTAAAAAAAAGCGATGAAAATGTGTTATTAGCACTAGAAAAAAGTAAAAAATAATTTCTGTAATAAGAAAAAGTTTGAAAAATGAAGAAAGAGTGTAAGAAAGAAAAGTGCTGCCATAATGTCAGATGCATGCATATGTGGGTAGACAGTGAAGCAAGAAAGAGTGGACTCCAAAAAGTTGAAAAGAAAATTAAAAATGTTAGAGCCCATAGTATATACAACTTAAAATTGATTCCAGTCTAAGAAAGACAAGAAGAACAAACCTTATTCTCCTATTCTGGCAATACTAAATTTCAGCAATTTTCTATATCAAATTAACATATACCTTTCTTTTCTGCCACACACACTATATAAAAATAGCGCAATGGATTGTCTTGGAATCATCTTTATCTTCTCCAAGTTTTTATATTAATAATTTTCATTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCCTATAATTCTGACTATTGGGTCTGTAATTAAAGAGTGGAAGTTGCCCCAATCAATCAAAAAGCTCAAAGCAGACACCAAAACCAAAAAGACAAC


Gene Sequence:
>Vu_01613(-)
ATGGGCAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGTATATTATACCACTTTCTTTCTAACCCTATTTCTAAACTTTCTTCCGTTCACAAACATATACCATCATTTCATTGACTATCCGTGTGTAGGACTCATTCAATCGACAAAGACTTCAAATTTTGAAACCACAGTGTTAAAATTATTATTATAAGATTATATATTCTAATTTGGTTTGGGTAATTCTCTTTTATTTAACAGCCATCATGATCAGTATGAAGATTAGGTTTGGTCCTTCTTTTTTTTGTGTGTCTGACAGTATCTTTAATTTTGTGATGAACTAGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTGAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAGGAAGAAGACAACATTATTTGCAGCCTTTACATCAGTATCGGAAGCAGGTTTATACATTCATTTTGATACACGTGTGTGTGTGTGTGTTCATTTCACTCCCAGCTTAATTAAGACTGTGTTACTTGCTACAATATATGCATGTTATACTAATTATAATGCGTGTTTGGTTTTTTGAGATATGATTTTTACTAAGATTATGGTTACGGCTTTCTCTTTCACATCTCAAACGTGTTGTTTCTTTGTTTCGTGAAACCCTGTTGGTTTGTGTGATCGCAGGTGGTCGGTGATTGCAGCACAGTTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCATCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAATTAGTGATGCTAATAGAAGGAGTAGCGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAATAGTAGCACTAGTCAACAACATCACCAACAACAACATCAACAATTATGTTGGCCACAGAACATCAACATGCCAGTGCTGCCACTACCCATAATACCCTTGCCATACACAACAAGCCAAGGTCCAGGTTTCAACGACCAAGATTCCATCAAGAAACTCCTGATCAAACTAGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACCCTTGATGGGTTGAACCTTCAATGCTCCTCACAAGGGCAACAAGTTTACCAAGAACAAGTCCATGTTGGTTCCTCTTCTTCTTCAGCCTGCATTGTTGCCAACAACGAGGTACACTTTGGACAAAATGGTCAATACTCTGGAGTTGATGACATGATGCAAGGACAAGATGGTAATTTCACGCCATCATTTGAGGAAATGGTGCCTTCTTCTAATTATTCAGATGGGTTAGAGTTCTTGTACAATGAAGGCATGATCCTCCACAAGATAACAGATTCTACTATCACTACTACTTGTGACCAAAACACCACTACCACCACCACAAATTGGGATGAAACCACCACTTCCATTTATCACCATGATTCACTTGCTTCCCATTTTGAAGGTCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCAGGGGCACAATAA